PI0014289.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0014289.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Polyubiquitin-like
Location	chr06: 25784316 .. 25784771 (+)
Sequence length	456
RNA-Seq Expression	PI0014289.1
Synteny	PI0014289.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACTGATCATCAATATCCTTCACTGAACAATAATAGCGATATGCCAATTAAATTAGCAGCTATTGAAGCTGTGCAGGCATTACCCGACATTGACGAAGACTTTCTTTTTGAAGCCTTTGATTTTCTTGAGAAGGGAAAGAATGCCAAAATGTTTATTGCAATGAATGCAAACTTACGAAGCAGGTGGTTGAGGAGAAAGCTTCGTCCCCAGCCAATGGTAATCTTTGTGACAATAATAATGTATGGCAATAAAAGAGCATTCAAAGTGTCCATGTTCACCACAATTGACGAATTGAAAGCTAAACTCTTTGGAAAGGAAGGATATCATCCAACAACAGTCTGCTTCATTTATGCTGGAAAGATACTTGAAGATGGAAGAAAAAGTCTATCAGCCTATAACATTACAAAGGACTGTACTATTCATTGTGTCGTGAGAATATGTGGCTGTTAA

mRNA sequence

ATGGCAACTGATCATCAATATCCTTCACTGAACAATAATAGCGATATGCCAATTAAATTAGCAGCTATTGAAGCTGTGCAGGCATTACCCGACATTGACGAAGACTTTCTTTTTGAAGCCTTTGATTTTCTTGAGAAGGGAAAGAATGCCAAAATGTTTATTGCAATGAATGCAAACTTACGAAGCAGGTGGTTGAGGAGAAAGCTTCGTCCCCAGCCAATGGTAATCTTTGTGACAATAATAATGTATGGCAATAAAAGAGCATTCAAAGTGTCCATGTTCACCACAATTGACGAATTGAAAGCTAAACTCTTTGGAAAGGAAGGATATCATCCAACAACAGTCTGCTTCATTTATGCTGGAAAGATACTTGAAGATGGAAGAAAAAGTCTATCAGCCTATAACATTACAAAGGACTGTACTATTCATTGTGTCGTGAGAATATGTGGCTGTTAA

Coding sequence (CDS)

ATGGCAACTGATCATCAATATCCTTCACTGAACAATAATAGCGATATGCCAATTAAATTAGCAGCTATTGAAGCTGTGCAGGCATTACCCGACATTGACGAAGACTTTCTTTTTGAAGCCTTTGATTTTCTTGAGAAGGGAAAGAATGCCAAAATGTTTATTGCAATGAATGCAAACTTACGAAGCAGGTGGTTGAGGAGAAAGCTTCGTCCCCAGCCAATGGTAATCTTTGTGACAATAATAATGTATGGCAATAAAAGAGCATTCAAAGTGTCCATGTTCACCACAATTGACGAATTGAAAGCTAAACTCTTTGGAAAGGAAGGATATCATCCAACAACAGTCTGCTTCATTTATGCTGGAAAGATACTTGAAGATGGAAGAAAAAGTCTATCAGCCTATAACATTACAAAGGACTGTACTATTCATTGTGTCGTGAGAATATGTGGCTGTTAA

Protein sequence

MATDHQYPSLNNNSDMPIKLAAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRRKLRPQPMVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDCTIHCVVRICGC

Homology

[Close]

BLAST of PI0014289.1 vs. ExPASy Swiss-Prot
Match: Q39256 (Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-09
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 74  MVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSA 133
           M IFV  +  G     +V    TID +KAK+  KEG  P     I+AGK LEDGR +L+ 
Sbjct: 79  MQIFVQTLT-GKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGR-TLAD 138

Query: 134 YNITKDCTIHCVVRICG 151
           YNI K+ T+H V+R+CG
Sbjct: 139 YNIQKESTLHLVLRLCG 153

[Close]

BLAST of PI0014289.1 vs. ExPASy Swiss-Prot
Match: Q9FHQ6 (Polyubiquitin 9 OS=Arabidopsis thaliana OX=3702 GN=UBQ9 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 88  AFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDCTIHCVVR 147
           A +V    T D +KAK+  KEG  P     I+AGK LEDGR +L+ YNI K+ T+H V+R
Sbjct: 168 ALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLADYNIQKESTLHLVLR 227

Query: 148 ICG 151
           +CG
Sbjct: 228 LCG 229

[Close]

BLAST of PI0014289.1 vs. ExPASy Swiss-Prot
Match: Q3E7K8 (Polyubiquitin 12 OS=Arabidopsis thaliana OX=3702 GN=UBQ12 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-08
Identity = 47/130 (36.15%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 21  AAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRRKLRPQPMVIFVTI 80
           A I+ ++ +P  D+  L  A   LE G+    +     +     LR +     M IFV  
Sbjct: 28  AKIQDIEGIPP-DQHRLIFAGKQLEDGRTLADYNVQEDSTLHLLLRFR---GGMQIFVKT 87

Query: 81  IMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDC 140
           +  G     +V    TID LKAK+  KEG  P     I+AGK LEDGR +L+ YNI K+ 
Sbjct: 88  LT-GKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLADYNIQKES 147

Query: 141 TIHCVVRICG 151
           T+H V+R+ G
Sbjct: 148 TLHLVLRLRG 151

[Close]

BLAST of PI0014289.1 vs. ExPASy Swiss-Prot
Match: Q8MKD1 (Polyubiquitin-B OS=Equus caballus OX=9796 GN=UBB PE=2 SV=3)

HSP 1 Score: 60.1 bits (144), Expect = 2.5e-08
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 74  MVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSA 133
           M IFV  +  G     +V    TI+ +KAK+  KEG  P    FI+AGK LEDGR +LS 
Sbjct: 153 MQIFVKTLT-GKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRFIFAGKQLEDGR-TLSD 212

Query: 134 YNITKDCTIHCVVRICG 151
           YNI K+ T+H V+R+ G
Sbjct: 213 YNIQKESTLHLVLRLRG 227

[Close]

BLAST of PI0014289.1 vs. ExPASy Swiss-Prot
Match: P19848 (Ubiquitin OS=Coprinellus congregatus OX=5347 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.3e-08
Identity = 36/77 (46.75%), Postives = 46/77 (59.74%), Query Frame = 0


Query: 74  MVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSA 133
           M IFV  +  G     +V    TID +KAK+  KEG  P     I+AGK LEDGR +LS 
Sbjct: 1   MQIFVKTLT-GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLSD 60

Query: 134 YNITKDCTIHCVVRICG 151
           YNI K+ T+H V+R+ G
Sbjct: 61  YNIQKESTLHLVLRLRG 75

[Close]

BLAST of PI0014289.1 vs. ExPASy TrEMBL
Match: A0A5D3BQI8 (Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00450 PE=4 SV=1)

HSP 1 Score: 194.5 bits (493), Expect = 3.2e-46
Identity = 105/151 (69.54%), Postives = 116/151 (76.82%), Query Frame = 0


Query: 1   MATDHQYPSLNNNSDMPIKLAAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANL 60
           MATD QY SL NN DM IKLAAIEAVQALPDI ED LFEAFDFLEK K+AKMF+A+N NL
Sbjct: 1   MATD-QYTSLTNNGDMSIKLAAIEAVQALPDIHEDLLFEAFDFLEKRKHAKMFMAINENL 60

Query: 61  RSRWLRRKLRPQPMVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYA 120
           RS+WLRRKL  +P  IFV I M GN  +  VS F TIDELK KL+ K+GY PT V  IYA
Sbjct: 61  RSKWLRRKLWQEPSEIFV-IAMDGNMISLSVSTFITIDELKVKLYEKKGYFPTKVTLIYA 120

Query: 121 GKILEDGRKSLSAYNITKDCTIHCVVRICGC 152
           GK+LEDGR SLS YNI   C IH V+R+CGC
Sbjct: 121 GKLLEDGR-SLSDYNIRDGCAIHAVLRLCGC 148

[Close]

BLAST of PI0014289.1 vs. ExPASy TrEMBL
Match: A0A5A7SML9 (Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00520 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 8.6e-44
Identity = 105/151 (69.54%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 1   MATDHQYPSLNNNSDMPIKLAAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANL 60
           MATD QY  LNNN DMPIKLAAIEAVQAL DIDED  FEAFDFLEK  NAKMFIAMNANL
Sbjct: 1   MATD-QYTLLNNNGDMPIKLAAIEAVQALSDIDEDLFFEAFDFLEKKNNAKMFIAMNANL 60

Query: 61  RSRWLRRKLRPQPMVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYA 120
           RSRWLRRKL    M I +  I YG     KVS F TI+ELK KL+ KE Y PT V FI A
Sbjct: 61  RSRWLRRKLWSPSMKILLKTI-YGKTIVVKVSAFITIEELKVKLYEKEAYLPTKVRFICA 120

Query: 121 GKILEDGRKSLSAYNITKDCTIHCVVRICGC 152
           GK LE+GR SLS YNIT   TIH + R+CGC
Sbjct: 121 GKELENGR-SLSDYNITDGSTIHTLFRVCGC 148

[Close]

BLAST of PI0014289.1 vs. ExPASy TrEMBL
Match: A0A0A0L2G3 (Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G080330 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 1.7e-23
Identity = 64/101 (63.37%), Postives = 73/101 (72.28%), Query Frame = 0


Query: 52  MFIAMNANLRSRWLRRKLRPQPMVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYH 111
           MFIAMNANLRSRWLRRKL P+P  IFV  +  GN  A KVS+F   D LK KL+ KEGY 
Sbjct: 1   MFIAMNANLRSRWLRRKLWPEPTEIFVK-LTNGNTIAIKVSIFIRTDGLKVKLYEKEGYL 60

Query: 112 PTTVCFIYAGKILEDGRK-SLSAYNITKDCTIHCVVRICGC 152
           P+ + FIYAGK+LEDGR  SLS YNIT   TI   +R+CGC
Sbjct: 61  PSNIRFIYAGKMLEDGRSLSLSDYNITDGSTILASLRLCGC 100

[Close]

BLAST of PI0014289.1 vs. ExPASy TrEMBL
Match: A0A6J1DL46 (ubiquitin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.0e-20
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 21  AAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRRKLRPQPMVIFVTI 80
           A I+AVQALPD+DED + +A DF +  +N ++F+A++  LR RWL R L     +     
Sbjct: 15  AVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLRNLPRSGQMQINVK 74

Query: 81  IMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDC 140
           ++ G    F++    TID +KAK+   EGY P     IY G+ LEDGR +L+ YNI    
Sbjct: 75  MLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGR-TLAEYNIRSGS 134

Query: 141 TIHCVVRICGC 152
           T+H V R+CGC
Sbjct: 135 TLHMVTRLCGC 144

[Close]

BLAST of PI0014289.1 vs. ExPASy TrEMBL
Match: A0A6J1DN50 (ubiquitin-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.8e-20
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 21  AAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRRKLRPQPMVIFVTI 80
           A I+AVQALPD+DED + +A DF +  +N ++F+A++  LR RWL R L P+   I V +
Sbjct: 15  AVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLRNL-PRSGQINVKM 74

Query: 81  IMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDC 140
           +  G    F++    TID +KAK+   EGY P     IY G+ LEDGR +L+ YNI    
Sbjct: 75  LT-GKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGR-TLAEYNIRSGS 134

Query: 141 TIHCVVRICGC 152
           T+H V R+CGC
Sbjct: 135 TLHMVTRLCGC 142

[Close]

BLAST of PI0014289.1 vs. NCBI nr
Match: KAA0025486.1 (polyubiquitin-like [Cucumis melo var. makuwa] >TYK00379.1 polyubiquitin-like [Cucumis melo var. makuwa])

HSP 1 Score: 194.5 bits (493), Expect = 6.6e-46
Identity = 105/151 (69.54%), Postives = 116/151 (76.82%), Query Frame = 0


Query: 1   MATDHQYPSLNNNSDMPIKLAAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANL 60
           MATD QY SL NN DM IKLAAIEAVQALPDI ED LFEAFDFLEK K+AKMF+A+N NL
Sbjct: 1   MATD-QYTSLTNNGDMSIKLAAIEAVQALPDIHEDLLFEAFDFLEKRKHAKMFMAINENL 60

Query: 61  RSRWLRRKLRPQPMVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYA 120
           RS+WLRRKL  +P  IFV I M GN  +  VS F TIDELK KL+ K+GY PT V  IYA
Sbjct: 61  RSKWLRRKLWQEPSEIFV-IAMDGNMISLSVSTFITIDELKVKLYEKKGYFPTKVTLIYA 120

Query: 121 GKILEDGRKSLSAYNITKDCTIHCVVRICGC 152
           GK+LEDGR SLS YNI   C IH V+R+CGC
Sbjct: 121 GKLLEDGR-SLSDYNIRDGCAIHAVLRLCGC 148

[Close]

BLAST of PI0014289.1 vs. NCBI nr
Match: KAA0025481.1 (polyubiquitin-like [Cucumis melo var. makuwa] >TYK00384.1 polyubiquitin-like [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 1.8e-43
Identity = 105/151 (69.54%), Postives = 111/151 (73.51%), Query Frame = 0


Query: 1   MATDHQYPSLNNNSDMPIKLAAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANL 60
           MATD QY  LNNN DMPIKLAAIEAVQAL DIDED  FEAFDFLEK  NAKMFIAMNANL
Sbjct: 1   MATD-QYTLLNNNGDMPIKLAAIEAVQALSDIDEDLFFEAFDFLEKKNNAKMFIAMNANL 60

Query: 61  RSRWLRRKLRPQPMVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYA 120
           RSRWLRRKL    M I +  I YG     KVS F TI+ELK KL+ KE Y PT V FI A
Sbjct: 61  RSRWLRRKLWSPSMKILLKTI-YGKTIVVKVSAFITIEELKVKLYEKEAYLPTKVRFICA 120

Query: 121 GKILEDGRKSLSAYNITKDCTIHCVVRICGC 152
           GK LE+GR SLS YNIT   TIH + R+CGC
Sbjct: 121 GKELENGR-SLSDYNITDGSTIHTLFRVCGC 148

[Close]

BLAST of PI0014289.1 vs. NCBI nr
Match: XP_022154970.1 (ubiquitin-like isoform X1 [Momordica charantia] >XP_022154971.1 ubiquitin-like isoform X1 [Momordica charantia])

HSP 1 Score: 109.8 bits (273), Expect = 2.1e-20
Identity = 56/131 (42.75%), Postives = 79/131 (60.31%), Query Frame = 0


Query: 21  AAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRRKLRPQPMVIFVTI 80
           A I+AVQALPD+DED + +A DF +  +N ++F+A++  LR RWL R L     +     
Sbjct: 15  AVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLRNLPRSGQMQINVK 74

Query: 81  IMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDC 140
           ++ G    F++    TID +KAK+   EGY P     IY G+ LEDGR +L+ YNI    
Sbjct: 75  MLTGKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGR-TLAEYNIRSGS 134

Query: 141 TIHCVVRICGC 152
           T+H V R+CGC
Sbjct: 135 TLHMVTRLCGC 144

[Close]

BLAST of PI0014289.1 vs. NCBI nr
Match: XP_022154972.1 (ubiquitin-like isoform X2 [Momordica charantia])

HSP 1 Score: 109.0 bits (271), Expect = 3.6e-20
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 21  AAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRRKLRPQPMVIFVTI 80
           A I+AVQALPD+DED + +A DF +  +N ++F+A++  LR RWL R L P+   I V +
Sbjct: 15  AVIKAVQALPDMDEDLILDACDFFQNPQNGEIFMALDRKLRKRWLLRNL-PRSGQINVKM 74

Query: 81  IMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDC 140
           +  G    F++    TID +KAK+   EGY P     IY G+ LEDGR +L+ YNI    
Sbjct: 75  LT-GKTLCFEILASNTIDVVKAKIEAMEGYPPDQQRLIYGGRQLEDGR-TLAEYNIRSGS 134

Query: 141 TIHCVVRICGC 152
           T+H V R+CGC
Sbjct: 135 TLHMVTRLCGC 142

[Close]

BLAST of PI0014289.1 vs. NCBI nr
Match: XP_008463442.1 (PREDICTED: polyubiquitin-like [Cucumis melo] >KAA0025478.1 polyubiquitin-like [Cucumis melo var. makuwa] >TYK00387.1 polyubiquitin-like [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.2e-16
Identity = 51/128 (39.84%), Postives = 80/128 (62.50%), Query Frame = 0


Query: 23  IEAVQALPDIDEDFLFEAFDFLEKGKN-AKMFIAMNANLRSRWLRRKLRPQPMVIFVTII 82
           I+AV+ALPD+DED + +AFDFL   +N AK+FI+M+A LR +WL +KLRPQP +      
Sbjct: 20  IKAVEALPDMDEDLILDAFDFLMDNENKAKVFISMDAKLRRKWLIKKLRPQPEMQIFVKT 79

Query: 83  MYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDCT 142
           + G K +  V    TI+++KAK+  KEGY       ++ G  L+D R +L +  +    +
Sbjct: 80  LEGRKMSLDVLTTDTINDVKAKIEAKEGYPQQQQRLVFNGWKLDDDR-TLGSCGLWSGSS 139

Query: 143 IHCVVRIC 150
           +H ++ +C
Sbjct: 140 LHLILCVC 146

[Close]

BLAST of PI0014289.1 vs. TAIR 10
Match: AT3G09790.1 (ubiquitin 8 )

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-10
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 0


Query: 74  MVIFVTIIMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSA 133
           M IFV  +  G     +V    TID +KAK+  KEG  P     I+AGK LEDGR +L+ 
Sbjct: 79  MQIFVQTLT-GKTITLEVKSSDTIDNVKAKIQDKEGILPRQQRLIFAGKQLEDGR-TLAD 138

Query: 134 YNITKDCTIHCVVRICG 151
           YNI K+ T+H V+R+CG
Sbjct: 139 YNIQKESTLHLVLRLCG 153

[Close]

BLAST of PI0014289.1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 8   PSLNNNSDMPIKLAAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRR 67
           P ++    M I+   +EA+QALPD+D++ + +A D LE    AK F+A++  LR +WL R
Sbjct: 374 PRVDETQTMSIE-DTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWLLR 433

Query: 68  KLRPQ 73
           KLRPQ
Sbjct: 434 KLRPQ 437

[Close]

BLAST of PI0014289.1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 29/65 (44.62%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 8   PSLNNNSDMPIKLAAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRR 67
           P ++    M I+   +EA+QALPD+D++ + +A D LE    AK F+A++  LR +WL R
Sbjct: 374 PRVDETQTMSIE-DTVEAIQALPDMDDELILDACDLLEDKLKAKTFLALDVKLRKKWLLR 433

Query: 68  KLRPQ 73
           KLRPQ
Sbjct: 434 KLRPQ 437

[Close]

BLAST of PI0014289.1 vs. TAIR 10
Match: AT5G37640.1 (ubiquitin 9 )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 31/63 (49.21%), Postives = 41/63 (65.08%), Query Frame = 0


Query: 88  AFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDCTIHCVVR 147
           A +V    T D +KAK+  KEG  P     I+AGK LEDGR +L+ YNI K+ T+H V+R
Sbjct: 168 ALEVESSDTTDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLADYNIQKESTLHLVLR 227

Query: 148 ICG 151
           +CG
Sbjct: 228 LCG 229

[Close]

BLAST of PI0014289.1 vs. TAIR 10
Match: AT1G55060.1 (ubiquitin 12 )

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-09
Identity = 47/130 (36.15%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 21  AAIEAVQALPDIDEDFLFEAFDFLEKGKNAKMFIAMNANLRSRWLRRKLRPQPMVIFVTI 80
           A I+ ++ +P  D+  L  A   LE G+    +     +     LR +     M IFV  
Sbjct: 28  AKIQDIEGIPP-DQHRLIFAGKQLEDGRTLADYNVQEDSTLHLLLRFR---GGMQIFVKT 87

Query: 81  IMYGNKRAFKVSMFTTIDELKAKLFGKEGYHPTTVCFIYAGKILEDGRKSLSAYNITKDC 140
           +  G     +V    TID LKAK+  KEG  P     I+AGK LEDGR +L+ YNI K+ 
Sbjct: 88  LT-GKTITLEVESSDTIDNLKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLADYNIQKES 147

Query: 141 TIHCVVRICG 151
           T+H V+R+ G
Sbjct: 148 TLHLVLRLRG 151

The following BLAST results are available for this feature:

BLAST of PI0014289.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39256	3.9e-09	46.75	Polyubiquitin 8 OS=Arabidopsis thaliana OX=3702 GN=UBQ8 PE=3 SV=1	[more]
Q9FHQ6	1.5e-08	49.21	Polyubiquitin 9 OS=Arabidopsis thaliana OX=3702 GN=UBQ9 PE=3 SV=1	[more]
Q3E7K8	1.9e-08	36.15	Polyubiquitin 12 OS=Arabidopsis thaliana OX=3702 GN=UBQ12 PE=3 SV=1	[more]
Q8MKD1	2.5e-08	46.75	Polyubiquitin-B OS=Equus caballus OX=9796 GN=UBB PE=2 SV=3	[more]
P19848	3.3e-08	46.75	Ubiquitin OS=Coprinellus congregatus OX=5347 PE=1 SV=1	[more]

BLAST of PI0014289.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQI8	3.2e-46	69.54	Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G...	[more]
A0A5A7SML9	8.6e-44	69.54	Polyubiquitin-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G...	[more]
A0A0A0L2G3	1.7e-23	63.37	Ubiquitin-like domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G080...	[more]
A0A6J1DL46	1.0e-20	42.75	ubiquitin-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV...	[more]
A0A6J1DN50	1.8e-20	45.04	ubiquitin-like isoform X2 OS=Momordica charantia OX=3673 GN=LOC111022115 PE=4 SV...	[more]

BLAST of PI0014289.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0025486.1	6.6e-46	69.54	polyubiquitin-like [Cucumis melo var. makuwa] >TYK00379.1 polyubiquitin-like [Cu...	[more]
KAA0025481.1	1.8e-43	69.54	polyubiquitin-like [Cucumis melo var. makuwa] >TYK00384.1 polyubiquitin-like [Cu...	[more]
XP_022154970.1	2.1e-20	42.75	ubiquitin-like isoform X1 [Momordica charantia] >XP_022154971.1 ubiquitin-like i...	[more]
XP_022154972.1	3.6e-20	45.04	ubiquitin-like isoform X2 [Momordica charantia]	[more]
XP_008463442.1	3.2e-16	39.84	PREDICTED: polyubiquitin-like [Cucumis melo] >KAA0025478.1 polyubiquitin-like [C...	[more]

BLAST of PI0014289.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09790.1	2.8e-10	46.75	ubiquitin 8	[more]
AT4G02210.1	1.1e-09	44.62	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	1.1e-09	44.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G37640.1	1.1e-09	49.21	ubiquitin 9	[more]
AT1G55060.1	1.4e-09	36.15	ubiquitin 12	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000626	Ubiquitin-like domain	SMART	SM00213	ubq_7	coord: 76..147 e-value: 1.1E-13 score: 61.4
IPR000626	Ubiquitin-like domain	PFAM	PF00240	ubiquitin	coord: 76..147 e-value: 3.7E-15 score: 55.4
IPR000626	Ubiquitin-like domain	PROSITE	PS50053	UBIQUITIN_2	coord: 74..151 score: 14.207658
None	No IPR available	GENE3D	3.10.20.90		coord: 66..151 e-value: 3.8E-18 score: 67.1
None	No IPR available	PANTHER	PTHR10666	UBIQUITIN	coord: 74..150
None	No IPR available	PANTHER	PTHR10666:SF348	UBIQUITIN-60S RIBOSOMAL PROTEIN L40-2	coord: 74..150
IPR029071	Ubiquitin-like domain superfamily	SUPERFAMILY	54236	Ubiquitin-like	coord: 70..149

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0014289	PI0014289	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014289.1-exon	PI0014289.1-exon-chr06:25784316..25784771	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014289.1-cds	PI0014289.1-cds-chr06:25784316..25784771	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0014289.1	PI0014289.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding