PI0014127.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0014127.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10
Location	chr01: 2616210 .. 2616772 (-)
Sequence length	534
RNA-Seq Expression	PI0014127.1
Synteny	PI0014127.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAATTGAAGGATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTGGTGGTGGAAGTACTCATGGATCAACAACCCCAAGTAGATATGAATCACAAAAAAGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTATTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTGTCCATTAAGACAAGCTTGGGAAGTTTAGATGCTTTAATTGGGAGACTAAGAGCTGCTTATGAAGAAAATGGTGGTTCTCAAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGATGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGACTACTATTAATCAAACCAAAGGAGGAGGTCATGATGATCAAGATTCTAGCTCAACCTCCATGATGCACTTTGTGCCTTGA

mRNA sequence

ATGTCAATTGAAGGATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTGGTGGTGGAAGTACTCATGGATCAACAACCCCAAGTAGATATGAATCACAAAAAAGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTATTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTATGCTTTAATTGGGAGACTAAGAGCTGCTTATGAAGAAAATGGTGGTTCTCAAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGATGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGACTACTATTAATCAAACCAAAGGAGGAGGTCATGATGATCAAGATTCTAGCTCAACCTCCATGATGCACTTTGTGCCTTGA

Coding sequence (CDS)

ATGTCAATTGAAGGATCAATTAGCAAAGATTTTTCAGAAGGATCTTCATCAAGTTCTGGTGGTGGAAGTACTCATGGATCAACAACCCCAAGTAGATATGAATCACAAAAAAGAAGAGATTGGAACACATTTTGCCAATATTTGAAGAATCAAAGGCCACCAGTTCCTCTTTCTCATTGTAATTGCAACCAAGTATTGGAATTTTTAAGGTACCTTGATCAATTTGGTAAAACAAAAGTTCATATTCAAGGTTGTATGTTTTATGGACAGCCTGAGCCACCTGCCCCTTGTACTTATGCTTTAATTGGGAGACTAAGAGCTGCTTATGAAGAAAATGGTGGTTCTCAAGAGACTAATCCTTTTGCTAGTGGTGCAATTAGGGTTTATCTTAGGGATGTTAGGGAATGTCAAGCTAAAGCAAGAGGAATTCCTTACAAAAAGAAGAAGAAGAAGACTACTATTAATCAAACCAAAGGAGGAGGTCATGATGATCAAGATTCTAGCTCAACCTCCATGATGCACTTTGTGCCTTGA

Protein sequence

MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTYALIGRLRAAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKGGGHDDQDSSSTSMMHFVP

Homology

[Close]

BLAST of PI0014127.1 vs. ExPASy Swiss-Prot
Match: Q9S7R3 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=LSH10 PE=1 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.1e-62
Identity = 125/175 (71.43%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 7   ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVL 66
           +S     G S     GS     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL
Sbjct: 1   MSSPRERGKSLMESSGS-EPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVL 60

Query: 67  EFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYEENGGSQ 126
           +FLRYLDQFGKTKVH+ GCMFYGQPEPPAPCT           ALIGRLRAAYEENGG  
Sbjct: 61  DFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPP 120

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKGGGHDDQDSSSTS 172
           ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK    +  GGG +D  SSS+S
Sbjct: 121 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPE-MGGGREDSSSSSSS 173

[Close]

BLAST of PI0014127.1 vs. ExPASy Swiss-Prot
Match: Q6ATW6 (Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.2e-47
Identity = 95/161 (59.01%), Postives = 111/161 (68.94%), Query Frame = 0


Query: 20  GGGSTHGSTTP--------------SRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQV 79
           GGG   G   P              SRYESQKRRDWNTF QYLKN RPP+ L+ C+   V
Sbjct: 4   GGGGADGQAQPVAQAPPAMQPMQQLSRYESQKRRDWNTFLQYLKNHRPPLTLARCSGAHV 63

Query: 80  LEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYEENGGS 139
           +EFL+YLDQFGKTKVH  GC +YGQP PPAPC            ALIGRLRAAYEE+G +
Sbjct: 64  IEFLKYLDQFGKTKVHASGCAYYGQPSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHA 123

Query: 140 QETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQ 157
            E+NPFA+ A+R+YLR+VR+ QAKARGIPY+KKK+K T  Q
Sbjct: 124 PESNPFAARAVRIYLREVRDAQAKARGIPYEKKKRKRTQQQ 164

[Close]

BLAST of PI0014127.1 vs. ExPASy Swiss-Prot
Match: A2Y5N0 (Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.2e-47
Identity = 89/136 (65.44%), Postives = 106/136 (77.94%), Query Frame = 0


Query: 31  SRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQ 90
           SRYESQKRRDWNTF QYL+N RPP+ L+ C+   V+EFL+YLDQFGKTKVH  GC +YGQ
Sbjct: 31  SRYESQKRRDWNTFLQYLRNHRPPLTLARCSGAHVIEFLKYLDQFGKTKVHASGCAYYGQ 90

Query: 91  PEPPAPCTY----------ALIGRLRAAYEENGGSQETNPFASGAIRVYLRDVRECQAKA 150
           P PPAPC            ALIGRLRAAYEE+G + E+NPFA+ A+R+YLR+VR+ QAKA
Sbjct: 91  PSPPAPCPCPLRQAWGSLDALIGRLRAAYEESGHAPESNPFAARAVRIYLREVRDAQAKA 150

Query: 151 RGIPYKKKKKKTTINQ 157
           RGIPY+KKK+K T  Q
Sbjct: 151 RGIPYEKKKRKRTQQQ 166

[Close]

BLAST of PI0014127.1 vs. ExPASy Swiss-Prot
Match: B8AH02 (Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.4e-47
Identity = 98/163 (60.12%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 12  SEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRY 71
           S G+SSS+GGG+     TPSRYE+QKRRDWNTF QYL+N RPP+ L+ C+   VLEFLRY
Sbjct: 54  SAGASSSAGGGAA-TPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRY 113

Query: 72  LDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYEENGGSQETNPF 131
           LDQFGKTKVH   C F+G P PPAPC            AL+GRLRAA+EENGG  E+NPF
Sbjct: 114 LDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 173

Query: 132 ASGAIRVYLRDVRECQAKARGIPYKKKKKK--TTINQTKGGGH 163
           A  A+R+YLR+VRE QA+ARG+ Y+KKK+K     + + GGGH
Sbjct: 174 AVRAVRLYLREVREHQARARGVSYEKKKRKKPQPADTSGGGGH 215

[Close]

BLAST of PI0014127.1 vs. ExPASy Swiss-Prot
Match: Q0DZF3 (Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.4e-47
Identity = 98/163 (60.12%), Postives = 119/163 (73.01%), Query Frame = 0


Query: 12  SEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRY 71
           S G+SSS+GGG+     TPSRYE+QKRRDWNTF QYL+N RPP+ L+ C+   VLEFLRY
Sbjct: 54  SAGASSSAGGGAA-TPQTPSRYEAQKRRDWNTFGQYLRNHRPPLGLAQCSGAHVLEFLRY 113

Query: 72  LDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYEENGGSQETNPF 131
           LDQFGKTKVH   C F+G P PPAPC            AL+GRLRAA+EENGG  E+NPF
Sbjct: 114 LDQFGKTKVHTAACPFFGHPNPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 173

Query: 132 ASGAIRVYLRDVRECQAKARGIPYKKKKKK--TTINQTKGGGH 163
           A  A+R+YLR+VRE QA+ARG+ Y+KKK+K     + + GGGH
Sbjct: 174 AVRAVRLYLREVREHQARARGVSYEKKKRKKPQPADTSGGGGH 215

[Close]

BLAST of PI0014127.1 vs. ExPASy TrEMBL
Match: A0A1S3C1B9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495500 PE=3 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 9.0e-93
Identity = 176/188 (93.62%), Postives = 176/188 (93.62%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYE 120
           NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCT           ALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT-TINQTKGGGHDDQDSSS 178
           ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT TINQTKGGGHDDQDSSS
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQDSSS 180

[Close]

BLAST of PI0014127.1 vs. ExPASy TrEMBL
Match: A0A5D3C6X1 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G003300 PE=3 SV=1)

HSP 1 Score: 349.0 bits (894), Expect = 1.2e-92
Identity = 176/189 (93.12%), Postives = 176/189 (93.12%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYE 120
           NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCT           ALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT--TINQTKGGGHDDQDSS 178
           ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT  TINQTKGGGHDDQDSS
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQDSS 180

[Close]

BLAST of PI0014127.1 vs. ExPASy TrEMBL
Match: A0A0A0K2D1 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.5e-91
Identity = 175/189 (92.59%), Postives = 176/189 (93.12%), Query Frame = 0


Query: 1   MSIEG-SISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MSIEG SISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAY 120
           CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCT           ALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKG-GGHDDQDSS 178
           EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTI+QTKG GGHDDQDSS
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180

[Close]

BLAST of PI0014127.1 vs. ExPASy TrEMBL
Match: A0A6J1JNV9 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=LOC111486170 PE=3 SV=1)

HSP 1 Score: 278.1 bits (710), Expect = 2.6e-71
Identity = 146/187 (78.07%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG  SKDFSEGSSS+S      G   PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSFEGG-SKDFSEGSSSTS--SPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCT           ALIGRLRAAYE
Sbjct: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKGGGHDDQDSSST 178
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TT NQ+KG         ST
Sbjct: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGA------EDST 178

[Close]

BLAST of PI0014127.1 vs. ExPASy TrEMBL
Match: A0A6J1EWG4 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 GN=LOC111437182 PE=3 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.3e-70
Identity = 146/188 (77.66%), Postives = 154/188 (81.91%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG+ +KDFSEGSSS+S      G + PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSFEGA-TKDFSEGSSSTS--SPQPGGSIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCT           ALIGRLRAAYE
Sbjct: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKK-TTINQTKGGGHDDQDSSS 178
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKK TT NQ+KG         S
Sbjct: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTTTNQSKGA------EDS 179

[Close]

BLAST of PI0014127.1 vs. NCBI nr
Match: XP_008455303.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo])

HSP 1 Score: 349.4 bits (895), Expect = 1.9e-92
Identity = 176/188 (93.62%), Postives = 176/188 (93.62%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYE 120
           NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCT           ALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT-TINQTKGGGHDDQDSSS 178
           ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT TINQTKGGGHDDQDSSS
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSTINQTKGGGHDDQDSSS 180

[Close]

BLAST of PI0014127.1 vs. NCBI nr
Match: KAA0031563.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa] >TYK07014.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa])

HSP 1 Score: 349.0 bits (894), Expect = 2.4e-92
Identity = 176/189 (93.12%), Postives = 176/189 (93.12%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYE 120
           NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCT           ALIGRLRAAYE
Sbjct: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT--TINQTKGGGHDDQDSS 178
           ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKT  TINQTKGGGHDDQDSS
Sbjct: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTSSTINQTKGGGHDDQDSS 180

[Close]

BLAST of PI0014127.1 vs. NCBI nr
Match: XP_004136831.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN43628.1 hypothetical protein Csa_017146 [Cucumis sativus])

HSP 1 Score: 342.8 bits (878), Expect = 1.7e-90
Identity = 175/189 (92.59%), Postives = 176/189 (93.12%), Query Frame = 0


Query: 1   MSIEG-SISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60
           MSIEG SISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH
Sbjct: 1   MSIEGSSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSH 60

Query: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAY 120
           CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCT           ALIGRLRAAY
Sbjct: 61  CNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAY 120

Query: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKG-GGHDDQDSS 178
           EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTI+QTKG GGHDDQDSS
Sbjct: 121 EENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTISQTKGSGGHDDQDSS 180

[Close]

BLAST of PI0014127.1 vs. NCBI nr
Match: XP_038887380.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Benincasa hispida])

HSP 1 Score: 316.2 bits (809), Expect = 1.8e-82
Identity = 163/191 (85.34%), Postives = 165/191 (86.39%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSS----GGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVP 60
           MSIEGSISKDF EGSSSSS     GGS+HGSTTPSRYESQKRRDWNTFCQYLKNQRPPVP
Sbjct: 1   MSIEGSISKDFYEGSSSSSSPQASGGSSHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVP 60

Query: 61  LSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLR 120
           LSHCN NQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPP PCT           ALIGRLR
Sbjct: 61  LSHCNSNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPNPCTCPLRQAWGSLDALIGRLR 120

Query: 121 AAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKGGGHDDQD 178
           AAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTT      GG DDQ+
Sbjct: 121 AAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTSTSQPKGGGDDQE 180

[Close]

BLAST of PI0014127.1 vs. NCBI nr
Match: XP_022988968.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima])

HSP 1 Score: 278.1 bits (710), Expect = 5.3e-71
Identity = 146/187 (78.07%), Postives = 151/187 (80.75%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60
           MS EG  SKDFSEGSSS+S      G   PSRYESQKRRDWNTFCQYLKNQRPPVPLSHC
Sbjct: 1   MSFEGG-SKDFSEGSSSTS--SPQPGGPIPSRYESQKRRDWNTFCQYLKNQRPPVPLSHC 60

Query: 61  NCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYE 120
           +CN VLEFLRYLDQFGKTKVH+QGCMFYGQPEPPAPCT           ALIGRLRAAYE
Sbjct: 61  SCNHVLEFLRYLDQFGKTKVHVQGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYE 120

Query: 121 ENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKGGGHDDQDSSST 178
           E+GGS ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKK TT NQ+KG         ST
Sbjct: 121 ESGGSPETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKTTTTNQSKGA------EDST 178

[Close]

BLAST of PI0014127.1 vs. TAIR 10
Match: AT2G42610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-63
Identity = 125/175 (71.43%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 7   ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVL 66
           +S     G S     GS     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL
Sbjct: 1   MSSPRERGKSLMESSGS-EPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVL 60

Query: 67  EFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYEENGGSQ 126
           +FLRYLDQFGKTKVH+ GCMFYGQPEPPAPCT           ALIGRLRAAYEENGG  
Sbjct: 61  DFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPP 120

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKGGGHDDQDSSSTS 172
           ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK    +  GGG +D  SSS+S
Sbjct: 121 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPE-MGGGREDSSSSSSS 173

[Close]

BLAST of PI0014127.1 vs. TAIR 10
Match: AT2G42610.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.0 bits (611), Expect = 1.5e-63
Identity = 125/175 (71.43%), Postives = 134/175 (76.57%), Query Frame = 0


Query: 7   ISKDFSEGSSSSSGGGSTHGSTTPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVL 66
           +S     G S     GS     TPSRYESQKRRDWNTF QYLKNQRPPVP+SHC+CN VL
Sbjct: 1   MSSPRERGKSLMESSGS-EPPVTPSRYESQKRRDWNTFGQYLKNQRPPVPMSHCSCNHVL 60

Query: 67  EFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALIGRLRAAYEENGGSQ 126
           +FLRYLDQFGKTKVH+ GCMFYGQPEPPAPCT           ALIGRLRAAYEENGG  
Sbjct: 61  DFLRYLDQFGKTKVHVPGCMFYGQPEPPAPCTCPLRQAWGSLDALIGRLRAAYEENGGPP 120

Query: 127 ETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKGGGHDDQDSSSTS 172
           ETNPFASGAIRVYLR+VRECQAKARGIPYKKKKKK    +  GGG +D  SSS+S
Sbjct: 121 ETNPFASGAIRVYLREVRECQAKARGIPYKKKKKKKPTPE-MGGGREDSSSSSSS 173

[Close]

BLAST of PI0014127.1 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 188.0 bits (476), Expect = 6.7e-48
Identity = 87/133 (65.41%), Postives = 106/133 (79.70%), Query Frame = 0


Query: 29  TPSRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFY 88
           TPSRYESQKRRDWNTF QYLKN +PP+ LS C+   V+EFL+YLDQFGKTKVH+  C ++
Sbjct: 28  TPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKTKVHVAACPYF 87

Query: 89  GQPEPPAPCTY----------ALIGRLRAAYEENGGSQETNPFASGAIRVYLRDVRECQA 148
           G  +PP+PC+           ALIGRLRAAYEENGG  ++NPFA+ A+R+YLR+VRE QA
Sbjct: 88  GHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRIYLREVRESQA 147

Query: 149 KARGIPYKKKKKK 152
           KARGIPY+KKK+K
Sbjct: 148 KARGIPYEKKKRK 160

[Close]

BLAST of PI0014127.1 vs. TAIR 10
Match: AT1G78815.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 187.6 bits (475), Expect = 8.8e-48
Identity = 102/187 (54.55%), Postives = 124/187 (66.31%), Query Frame = 0


Query: 1   MSIEGSISKDFSEGSS--SSSGGGSTHGSTTP------SRYESQKRRDWNTFCQYLKNQR 60
           M+   +  K  +EGSS   S      H   +P      SRYESQKRRDWNTFCQYL+NQ+
Sbjct: 1   MASHSNKGKGIAEGSSQPQSQPQPQPHQPQSPPNPPALSRYESQKRRDWNTFCQYLRNQQ 60

Query: 61  PPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQPEPPAPCTY----------ALI 120
           PPV +S C  N +L+FL+YLDQFGKTKVHI GC+F+GQ EP   C            ALI
Sbjct: 61  PPVHISQCGSNHILDFLQYLDQFGKTKVHIHGCVFFGQVEPAGQCNCPLKQAWGSLDALI 120

Query: 121 GRLRAAYEENGGSQETNPFASGAIRVYLRDVRECQAKARGIPYKKKKKKTTINQTKGGGH 170
           GRLRAA+EENGG  E NPFA G IRV+LR+VR+ QAKARG+PYKK+KK+   N  K   H
Sbjct: 121 GRLRAAFEENGGLPERNPFAGGGIRVFLREVRDSQAKARGVPYKKRKKRKKRNPMK--SH 180

[Close]

BLAST of PI0014127.1 vs. TAIR 10
Match: AT4G18610.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 186.0 bits (471), Expect = 2.5e-47
Identity = 95/150 (63.33%), Postives = 114/150 (76.00%), Query Frame = 0


Query: 31  SRYESQKRRDWNTFCQYLKNQRPPVPLSHCNCNQVLEFLRYLDQFGKTKVHIQGCMFYGQ 90
           SRYESQKRRDWNTF QYLK+Q PP+ +S  +   VL FLRYLDQFGKTKVH Q C+F+GQ
Sbjct: 36  SRYESQKRRDWNTFVQYLKSQNPPLMMSQFDYTHVLSFLRYLDQFGKTKVHHQACVFFGQ 95

Query: 91  PEPPAPCTY----------ALIGRLRAAYEEN-GGSQETNPFASGAIRVYLRDVRECQAK 150
           P+PP PCT           ALIGRLRAAYEE+ GGS +TNPFA+G+IRV+LR+VRE QAK
Sbjct: 96  PDPPGPCTCPLKQAWGSLDALIGRLRAAYEEHGGGSPDTNPFANGSIRVHLREVRESQAK 155

Query: 151 ARGIPYKKKKKKTTINQTKGGGHDDQDSSS 170
           ARGIPY+KKK++ T N+      D  +SS+
Sbjct: 156 ARGIPYRKKKRRKTKNEVVVVKKDVANSST 185

The following BLAST results are available for this feature:

BLAST of PI0014127.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9S7R3	2.1e-62	71.43	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Arabidopsis thaliana OX=3702 GN=L...	[more]
Q6ATW6	4.2e-47	59.01	Protein G1-like8 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L8 PE=1 SV=1	[more]
A2Y5N0	7.2e-47	65.44	Protein G1-like8 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_20303 PE=3 SV=1	[more]
B8AH02	9.4e-47	60.12	Protein G1-like3 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_05696 PE=3 SV=1	[more]
Q0DZF3	9.4e-47	60.12	Protein G1-like3 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L3 PE=1 SV=1	[more]

BLAST of PI0014127.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3C1B9	9.0e-93	93.62	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo OX=3656 GN=LOC103495...	[more]
A0A5D3C6X1	1.2e-92	93.12	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K2D1	8.5e-91	92.59	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G048120 PE=3 S...	[more]
A0A6J1JNV9	2.6e-71	78.07	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1EWG4	1.3e-70	77.66	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of PI0014127.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008455303.1	1.9e-92	93.62	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo]	[more]
KAA0031563.1	2.4e-92	93.12	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis melo var. makuwa] >TYK07014...	[more]
XP_004136831.1	1.7e-90	92.59	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Cucumis sativus] >KGN43628.1 hypoth...	[more]
XP_038887380.1	1.8e-82	85.34	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Benincasa hispida]	[more]
XP_022988968.1	5.3e-71	78.07	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10-like [Cucurbita maxima]	[more]

BLAST of PI0014127.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42610.1	1.5e-63	71.43	Protein of unknown function (DUF640)	[more]
AT2G42610.2	1.5e-63	71.43	Protein of unknown function (DUF640)	[more]
AT1G07090.1	6.7e-48	65.41	Protein of unknown function (DUF640)	[more]
AT1G78815.1	8.8e-48	54.55	Protein of unknown function (DUF640)	[more]
AT4G18610.1	2.5e-47	63.33	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 29..135 e-value: 2.2E-48 score: 163.6
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 32..149 score: 64.137039
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 158..177
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35
None	No IPR available	PANTHER	PTHR31165:SF72	DUF640 FAMILY PROTEIN	coord: 5..175
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 5..175

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0014127	PI0014127	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014127.1-exon	PI0014127.1-exon-chr01:2616210..2616448	exon
PI0014127.1-exon	PI0014127.1-exon-chr01:2616478..2616772	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0014127.1-cds	PI0014127.1-cds-chr01:2616210..2616448	CDS
PI0014127.1-cds	PI0014127.1-cds-chr01:2616478..2616772	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0014127.1	PI0014127.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009299	mRNA transcription
biological_process	GO:0009416	response to light stimulus
cellular_component	GO:0005634	nucleus