PI0013891.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0013891.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr10: 14036342 .. 14036527 (+)
Sequence length	186
RNA-Seq Expression	PI0013891.1
Synteny	PI0013891.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCGCACTCTCTGGAAAGAACAAGATTGGGTTCATAACCGATACGATCAAGAAACCTACAGAAGGTAATCTCCTTTCTGCTTGGAAATGCAACAACGACGTAATAGCTTCTTGGATAATTAACTCCATCTCAAAAGAAATCTCTGCCAGCTTAGTCTATAATGGAAGTGTAAAAGAAATATGA

mRNA sequence

ATGCTCGCACTCTCTGGAAAGAACAAGATTGGGTTCATAACCGATACGATCAAGAAACCTACAGAAGGTAATCTCCTTTCTGCTTGGAAATGCAACAACGACGTAATAGCTTCTTGGATAATTAACTCCATCTCAAAAGAAATCTCTGCCAGCTTAGTCTATAATGGAAGTGTAAAAGAAATATGA

Coding sequence (CDS)

ATGCTCGCACTCTCTGGAAAGAACAAGATTGGGTTCATAACCGATACGATCAAGAAACCTACAGAAGGTAATCTCCTTTCTGCTTGGAAATGCAACAACGACGTAATAGCTTCTTGGATAATTAACTCCATCTCAAAAGAAATCTCTGCCAGCTTAGTCTATAATGGAAGTGTAAAAGAAATATGA

Protein sequence

MLALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKEI

Homology

[Close]

BLAST of PI0013891.1 vs. ExPASy TrEMBL
Match: A0A5D3D9Z1 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00110 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.2e-21
Identity = 51/60 (85.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2  LALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKEI 61
          L LSGKNK+GFIT++IKKP+EGNLLSAWKCN+DVIASWIINSISKEI+ASLVY+GSVKE+
Sbjct: 3  LVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEV 62

[Close]

BLAST of PI0013891.1 vs. ExPASy TrEMBL
Match: A0A5D3C350 (UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002490 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.5e-20
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   MLALSGKNKIGFITDTIKKPTEGN-LLSAWKCNNDVIASWIINSISKEISASLVYNGSV 59
           MLALSGKNK+GFIT TIKKP+EGN LLSAWKCNND IASWIINSISKEI+ASLVYNGSV
Sbjct: 61  MLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSV 119

[Close]

BLAST of PI0013891.1 vs. ExPASy TrEMBL
Match: A0A6J1CXR2 (uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015239 PE=4 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.1e-17
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKE 60
           ++ALSGKNK+GFI  TIKKP  GNLL+AWKCNND+I SWIINS+SKEI+AS++Y GS K+
Sbjct: 59  LIALSGKNKVGFIDGTIKKP-NGNLLAAWKCNNDIITSWIINSVSKEIAASIIYTGSAKD 118

Query: 61  I 62
           I
Sbjct: 119 I 118

[Close]

BLAST of PI0013891.1 vs. ExPASy TrEMBL
Match: A0A5A7VE66 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold76G00250 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-16
Identity = 39/61 (63.93%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKE 60
           ++A+SG+NK GFIT  I+KP++G LL AW CNND++ASWI+NS+SKEI+AS++Y GS+KE
Sbjct: 60  LMAISGRNKAGFITGKIQKPSDGVLLDAWICNNDILASWILNSVSKEIAASIIYIGSIKE 119

Query: 61  I 62
           I
Sbjct: 120 I 120

[Close]

BLAST of PI0013891.1 vs. ExPASy TrEMBL
Match: A0A6J1CN69 (uncharacterized protein LOC111012810 OS=Momordica charantia OX=3673 GN=LOC111012810 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.0e-16
Identity = 42/61 (68.85%), Postives = 53/61 (86.89%), Query Frame = 0


Query: 1   MLALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKE 60
           ++ALSGKNK+GF+  TI+KP +GNLL+AWKC ND+I SWI+NS+SKEI+AS VY GS KE
Sbjct: 70  IIALSGKNKVGFVDGTIQKP-KGNLLAAWKCINDIITSWILNSVSKEIAASFVYTGSAKE 129

Query: 61  I 62
           I
Sbjct: 130 I 129

[Close]

BLAST of PI0013891.1 vs. NCBI nr
Match: KAA0054564.1 (uncharacterized protein E6C27_scaffold24G003560 [Cucumis melo var. makuwa] >TYK20391.1 uncharacterized protein E5676_scaffold519G00110 [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 8.6e-21
Identity = 51/60 (85.00%), Postives = 59/60 (98.33%), Query Frame = 0


Query: 2  LALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKEI 61
          L LSGKNK+GFIT++IKKP+EGNLLSAWKCN+DVIASWIINSISKEI+ASLVY+GSVKE+
Sbjct: 3  LVLSGKNKVGFITNSIKKPSEGNLLSAWKCNSDVIASWIINSISKEIAASLVYHGSVKEV 62

[Close]

BLAST of PI0013891.1 vs. NCBI nr
Match: TYK05760.1 (UBN2_3 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 106.7 bits (265), Expect = 7.3e-20
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 0


Query: 1   MLALSGKNKIGFITDTIKKPTEGN-LLSAWKCNNDVIASWIINSISKEISASLVYNGSV 59
           MLALSGKNK+GFIT TIKKP+EGN LLSAWKCNND IASWIINSISKEI+ASLVYNGSV
Sbjct: 61  MLALSGKNKVGFITGTIKKPSEGNYLLSAWKCNNDAIASWIINSISKEIAASLVYNGSV 119

[Close]

BLAST of PI0013891.1 vs. NCBI nr
Match: XP_038888312.1 (uncharacterized protein LOC120078158 [Benincasa hispida])

HSP 1 Score: 101.7 bits (252), Expect = 2.3e-18
Identity = 48/60 (80.00%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 2  LALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKEI 61
          L LSGKNKIGFIT TI+KP EG+L SAW+CNNDVI SWIINS+SKEI+ SLVY GSVKEI
Sbjct: 7  LTLSGKNKIGFITGTIEKPLEGSLQSAWRCNNDVITSWIINSVSKEIAVSLVYRGSVKEI 66

[Close]

BLAST of PI0013891.1 vs. NCBI nr
Match: XP_022145891.1 (uncharacterized protein LOC111015239 [Momordica charantia])

HSP 1 Score: 97.4 bits (241), Expect = 4.4e-17
Identity = 44/61 (72.13%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKE 60
           ++ALSGKNK+GFI  TIKKP  GNLL+AWKCNND+I SWIINS+SKEI+AS++Y GS K+
Sbjct: 59  LIALSGKNKVGFIDGTIKKP-NGNLLAAWKCNNDIITSWIINSVSKEIAASIIYTGSAKD 118

Query: 61  I 62
           I
Sbjct: 119 I 118

[Close]

BLAST of PI0013891.1 vs. NCBI nr
Match: KAA0065480.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK08721.1 Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 39/61 (63.93%), Postives = 54/61 (88.52%), Query Frame = 0


Query: 1   MLALSGKNKIGFITDTIKKPTEGNLLSAWKCNNDVIASWIINSISKEISASLVYNGSVKE 60
           ++A+SG+NK GFIT  I+KP++G LL AW CNND++ASWI+NS+SKEI+AS++Y GS+KE
Sbjct: 60  LMAISGRNKAGFITGKIQKPSDGVLLDAWICNNDILASWILNSVSKEIAASIIYIGSIKE 119

Query: 61  I 62
           I
Sbjct: 120 I 120

The following BLAST results are available for this feature:

BLAST of PI0013891.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0013891.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D9Z1	4.2e-21	85.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3C350	3.5e-20	89.83	UBN2_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A6J1CXR2	2.1e-17	72.13	uncharacterized protein LOC111015239 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]
A0A5A7VE66	6.9e-16	63.93	Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A6J1CN69	9.0e-16	68.85	uncharacterized protein LOC111012810 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of PI0013891.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054564.1	8.6e-21	85.00	uncharacterized protein E6C27_scaffold24G003560 [Cucumis melo var. makuwa] >TYK2...	[more]
TYK05760.1	7.3e-20	89.83	UBN2_3 domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_038888312.1	2.3e-18	80.00	uncharacterized protein LOC120078158 [Benincasa hispida]	[more]
XP_022145891.1	4.4e-17	72.13	uncharacterized protein LOC111015239 [Momordica charantia]	[more]
KAA0065480.1	1.4e-15	63.93	Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]

BLAST of PI0013891.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37610	FAMILY NOT NAMED	coord: 2..61
None	No IPR available	PANTHER	PTHR37610:SF55	SUBFAMILY NOT NAMED	coord: 2..61

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0013891	PI0013891	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013891.1-exon	PI0013891.1-exon-chr10:14036342..14036527	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013891.1-cds	PI0013891.1-cds-chr10:14036342..14036527	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0013891.1	PI0013891.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0016757	glycosyltransferase activity
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding