PI0013311.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0013311.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr10: 9878464 .. 9879684 (-)
Sequence length	1221
RNA-Seq Expression	PI0013311.1
Synteny	PI0013311.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTCCTCAGGGTTACCGATCTCTTAGCTTGTTAGTTGCGTTGCGCTTCCTTCCCTTCTCCCACCTCACCATCTACGCCGTCGCCACCTCCATCTCCGATTCAGCTCTCCATCAGGTTTTAAAATCTCAAAGGTTAATTTGAAGAATGGTTTGTAAATTTTCTGTAAGGTTGTTGAATATTTGTGTGTCCTCACTTTGTAAATCTCAGCAAATGCAGAAAGCTGAAATTGTAATAACAGACGCCATTCGGTTAGGAGTTCGACCTAATGTAGTAACTTACAATTCTTTGATTCATGGATACTGTCAATTTAGCTGCATGGATGCTGCTTATTCTGTTCTTTATAGAATGAGAGAAGCTAGTATTAGTCCAAATGTGATTACTTATAATTCTTTGATAGCTGCTGCAACTAGAAATGGTTCATTACAACAATCCATTAATCTATTTGAAGAAATGCTTCAATCAGGTATCACTCCTGATGCATTGTGTTACACCACTTTGATGCAATGTTACCACAAGATAGTAAAGCCAGATGAAACCAATAGAGTTTTTGAGGAGATTCCATTGTGCGTTAAAGTTACTGCTTGCCTGCTTGAGAGGTTGAAGGAAGGTTAGTCCAAACATTGCGCCAGTTTTGTTAAAAACAAAATCAAATGGCACAACGTCAAAGCAGTAAAGCCACAAGTCACAAAACGACTAATACCCTGCCTCCCATTGTAATGAAGACGATAAGGTTTGAAGAGTCGTTAACGCGTCCATCTGGATGGCCGTCGAGACCCCACACTTAGTTCTTCCGGATTTACAAGTGAAGCACCGTAGCTCAAAACAGAAATACGCTTGGCTCGACTCTTTCATTGACCATCTGGATTCTTATGCTATATGATATCGCAATATGGATTTTTAACTTTGAAGGCCAATTTATTTGATGATTAACGGGCCGTGCAAGCTTCAACTGACAATGCCATGAGGTGACCCTTAAATTGCATACTTCATTGGTTGAATAATCGACTTATTTCAGGGGCTCTCTCAACCTTATGCTCCTTGTATTATATATATAAAACTGAAATAGAAGTTAGCTAAACTGTCTCCCAGACCCAGGTTTAAGTCTTACTATGATTCATTTTACTTCCGTCAATAATTATTTTTTGTTTTACTAGTTTTCAATGTTTCTAATGTTTTAATGTGGACGTCTTAGATCATAAATTTCAGAACAATCTTGTGTT

mRNA sequence

ATTTCCTCAGGGTTACCGATCTCTTAGCTTGTTAGTTGCGTTGCGCTTCCTTCCCTTCTCCCACCTCACCATCTACGCCGTCGCCACCTCCATCTCCGATTCAGCTCTCCATCAGGTTTTAAAATCTCAAAGGTTAATTTGAAGAATGGTTTGTAAATTTTCTGTAAGGTTGTTGAATATTTGTGTGTCCTCACTTTGTAAATCTCAGCAAATGCAGAAAGCTGAAATTGTAATAACAGACGCCATTCGGTTAGGAGTTCGACCTAATGTAGTAACTTACAATTCTTTGATTCATGGATACTGTCAATTTAGCTGCATGGATGCTGCTTATTCTGTTCTTTATAGAATGAGAGAAGCTAGTATTAGTCCAAATGTGATTACTTATAATTCTTTGATAGCTGCTGCAACTAGAAATGGTTCATTACAACAATCCATTAATCTATTTGAAGAAATGCTTCAATCAGGTATCACTCCTGATGCATTGTGTTACACCACTTTGATGCAATGTTACCACAAGATAGTAAAGCCAGATGAAACCAATAGAGTTTTTGAGGAGATTCCATTGTGCGTTAAAGTTACTGCTTGCCTGCTTGAGAGGTTGAAGGAAGGTTAGTCCAAACATTGCGCCAGTTTTGTTAAAAACAAAATCAAATGGCACAACGTCAAAGCAGTAAAGCCACAAGTCACAAAACGACTAATACCCTGCCTCCCATTGTAATGAAGACGATAAGGTTTGAAGAGTCGTTAACGCGTCCATCTGGATGGCCGTCGAGACCCCACACTTAGTTCTTCCGGATTTACAAGTGAAGCACCGTAGCTCAAAACAGAAATACGCTTGGCTCGACTCTTTCATTGACCATCTGGATTCTTATGCTATATGATATCGCAATATGGATTTTTAACTTTGAAGGCCAATTTATTTGATGATTAACGGGCCGTGCAAGCTTCAACTGACAATGCCATGAGGTGACCCTTAAATTGCATACTTCATTGGTTGAATAATCGACTTATTTCAGGGGCTCTCTCAACCTTATGCTCCTTGTATTATATATATAAAACTGAAATAGAAGTTAGCTAAACTGTCTCCCAGACCCAGGTTTAAGTCTTACTATGATTCATTTTACTTCCGTCAATAATTATTTTTTGTTTTACTAGTTTTCAATGTTTCTAATGTTTTAATGTGGACGTCTTAGATCATAAATTTCAGAACAATCTTGTGTT

Coding sequence (CDS)

ATGGTTTGTAAATTTTCTGTAAGGTTGTTGAATATTTGTGTGTCCTCACTTTGTAAATCTCAGCAAATGCAGAAAGCTGAAATTGTAATAACAGACGCCATTCGGTTAGGAGTTCGACCTAATGTAGTAACTTACAATTCTTTGATTCATGGATACTGTCAATTTAGCTGCATGGATGCTGCTTATTCTGTTCTTTATAGAATGAGAGAAGCTAGTATTAGTCCAAATGTGATTACTTATAATTCTTTGATAGCTGCTGCAACTAGAAATGGTTCATTACAACAATCCATTAATCTATTTGAAGAAATGCTTCAATCAGGTATCACTCCTGATGCATTGTGTTACACCACTTTGATGCAATGTTACCACAAGATAGTAAAGCCAGATGAAACCAATAGAGTTTTTGAGGAGATTCCATTGTGCGTTAAAGTTACTGCTTGCCTGCTTGAGAGGTTGAAGGAAGGTTAG

Protein sequence

MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKIVKPDETNRVFEEIPLCVKVTACLLERLKEG

Homology

[Close]

BLAST of PI0013311.1 vs. ExPASy Swiss-Prot
Match: P0C043 (Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis thaliana OX=3702 GN=At4g17915 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 5.2e-33
Identity = 74/129 (57.36%), Postives = 92/129 (71.32%), Query Frame = 0


Query: 6   SVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVL 65
           S RLLNICV SLCK ++++KAE +I D IRLGV P+VVTYN+LI GYC+F  ++ AY+V 
Sbjct: 12  STRLLNICVDSLCKFRKLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVT 71

Query: 66  YRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKI 125
            RMR+A I P+V TYNSLIA A R   L   + LF+EML+ GI PD   Y TLM CY K+
Sbjct: 72  RRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKL 131

Query: 126 VKPDETNRV 135
            K +E  RV
Sbjct: 132 GKHEEAFRV 140

[Close]

BLAST of PI0013311.1 vs. ExPASy Swiss-Prot
Match: Q56XR6 (Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX=3702 GN=At5g46680 PE=2 SV=2)

HSP 1 Score: 137.1 bits (344), Expect = 1.7e-31
Identity = 67/132 (50.76%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 6   SVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVL 65
           S +LLNI V+SLCK + +++AE ++ D IRLGV P+V+TYN+LI GY +F  +D AY+V 
Sbjct: 12  STKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVT 71

Query: 66  YRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKI 125
            RMREA I P+V TYNSLI+ A +N  L + + LF+EML SG++PD   Y TLM CY K+
Sbjct: 72  RRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKL 131

Query: 126 VKPDETNRVFEE 138
            +  E  ++  E
Sbjct: 132 GRHGEAFKILHE 143

[Close]

BLAST of PI0013311.1 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-18
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 4   KFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYS 63
           K +V + N  + SLCK + ++ A  + T+    G+RPNVVTYNSLI+  C +     A  
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 64  VLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYH 123
           +L  M E  I+PNV+T+N+LI A  + G L ++  L EEM+Q  I PD + Y  L+  + 
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374

Query: 124 KIVKPDETNRVFE 137
              + DE  ++F+
Sbjct: 375 MHNRLDEAKQMFK 387

[Close]

BLAST of PI0013311.1 vs. ExPASy Swiss-Prot
Match: Q3ECK2 (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62680 PE=2 SV=2)

HSP 1 Score: 92.0 bits (227), Expect = 6.2e-18
Identity = 49/128 (38.28%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 11  NICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVLYRMRE 70
           N  + SLCK++++  A     +  R G+RPNVVTY +L++G C  S    A  +L  M +
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253

Query: 71  ASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ--CYHKIVKP 130
             I+PNVITY++L+ A  +NG + ++  LFEEM++  I PD + Y++L+   C H  +  
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI-- 313

Query: 131 DETNRVFE 137
           DE N++F+
Sbjct: 314 DEANQMFD 319

[Close]

BLAST of PI0013311.1 vs. ExPASy Swiss-Prot
Match: Q0WVK7 (Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g05670 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 6.8e-17
Identity = 41/125 (32.80%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 14  VSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVLYRMREASI 73
           ++  CK+  M+ A  V    I+ G  PNVVTY +LI G C+   +D+A  +L+ M +  +
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 74  SPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKIVKPDETNR 133
            PN+ TYNS++    ++G++++++ L  E   +G+  D + YTTLM  Y K  + D+   
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 134 VFEEI 139
           + +E+
Sbjct: 548 ILKEM 552

[Close]

BLAST of PI0013311.1 vs. ExPASy TrEMBL
Match: A0A0A0KR32 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G292240 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 7.4e-75
Identity = 141/155 (90.97%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDA 60
           MVCKFSVRLLN+CVSSLCKS+QMQKAEIVITDAIRLGV PNVVTYN LIHGYCQ  CMDA
Sbjct: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREASISPNVITYNSLIAAAT+NGSL+QS+NLFEEMLQSGITPDALCYTTLMQ
Sbjct: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120

Query: 121 CYHKIVKPDETNRVFEEIPLCVKVTACLLERLKEG 156
           CYH++VKPDE NRVFEEIPLC+KVTACLLE+LKEG
Sbjct: 121 CYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG 155

[Close]

BLAST of PI0013311.1 vs. ExPASy TrEMBL
Match: A0A5A7SQ67 (Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00490 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61
Identity = 119/133 (89.47%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 23  MQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVLYRMREASISPNVITYNS 82
           MQKAEI ITDAIRLGV PNVVTYN LIHGYCQF CMDAAYSVLYRMREASISPNVITYNS
Sbjct: 1   MQKAEIAITDAIRLGVLPNVVTYNFLIHGYCQFRCMDAAYSVLYRMREASISPNVITYNS 60

Query: 83  LIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKIVKPDETNRVFEEIPLCV 142
           LIAAAT+NGSL+QS+NLFEEMLQ GITPDALCYTTLMQCY+K+VKPDE NRVFE IPLC+
Sbjct: 61  LIAAATKNGSLEQSLNLFEEMLQLGITPDALCYTTLMQCYNKMVKPDEANRVFEGIPLCI 120

Query: 143 KVTACLLERLKEG 156
           KVTACLLE+LKEG
Sbjct: 121 KVTACLLEKLKEG 133

[Close]

BLAST of PI0013311.1 vs. ExPASy TrEMBL
Match: A0A1S3B4M5 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo OX=3656 GN=LOC103486102 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 3.1e-49
Identity = 103/140 (73.57%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDA 60
           MVCK+S + LNICV+S CKSQQMQKAE VI D IR+GV PNVVTYN+LI GYC+FS MDA
Sbjct: 1   MVCKYSTKFLNICVASFCKSQQMQKAEAVIIDGIRIGVLPNVVTYNTLIDGYCRFSGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREA ISP+VITYNSLIA ATRN SL+QS++LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVLYRMREAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHKIVKPDETNRVFEEIPL 141
           C+  + KPDE  RVF++I L
Sbjct: 121 CFFILGKPDEAYRVFKDIIL 140

[Close]

BLAST of PI0013311.1 vs. ExPASy TrEMBL
Match: A0A6J1D2P0 (putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica charantia OX=3673 GN=LOC111016743 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.4e-49
Identity = 101/140 (72.14%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDA 60
           MVCKFS + LNICV+S CKS+QMQKAE VI D IRLGV P+VVTYN+L+ GYC+F  MDA
Sbjct: 1   MVCKFSTKFLNICVASYCKSRQMQKAEAVIIDGIRLGVLPDVVTYNTLLDGYCRFIGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ 120
           AYSV+YRMREA ISP+VITYNSLIA ATRN SL+QS++LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVIYRMREAGISPDVITYNSLIAGATRNCSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHKIVKPDETNRVFEEIPL 141
           C+ ++ KPDE NRVF++I L
Sbjct: 121 CFFRLGKPDEANRVFKDIIL 140

[Close]

BLAST of PI0013311.1 vs. ExPASy TrEMBL
Match: A0A6J1IFW8 (putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111472462 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.5e-48
Identity = 101/140 (72.14%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDA 60
           MV K+S + LNICV+S CKSQQMQKAE VI D IRLGV P+VVTYN+LI GYC+FS MDA
Sbjct: 1   MVSKYSTKFLNICVASFCKSQQMQKAEDVIIDGIRLGVLPDVVTYNTLIDGYCRFSGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREA ISP+VITYNSLIA A+RN SL+QS++LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVLYRMREAGISPDVITYNSLIAGASRNRSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHKIVKPDETNRVFEEIPL 141
           C  ++ KPDE NR+F++I L
Sbjct: 121 CLFRLGKPDEANRIFKDIIL 140

[Close]

BLAST of PI0013311.1 vs. NCBI nr
Match: KAE8637314.1 (hypothetical protein CSA_019100 [Cucumis sativus] >KGN50867.1 hypothetical protein Csa_004715 [Cucumis sativus])

HSP 1 Score: 289.7 bits (740), Expect = 1.5e-74
Identity = 141/155 (90.97%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDA 60
           MVCKFSVRLLN+CVSSLCKS+QMQKAEIVITDAIRLGV PNVVTYN LIHGYCQ  CMDA
Sbjct: 1   MVCKFSVRLLNVCVSSLCKSEQMQKAEIVITDAIRLGVLPNVVTYNFLIHGYCQIRCMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREASISPNVITYNSLIAAAT+NGSL+QS+NLFEEMLQSGITPDALCYTTLMQ
Sbjct: 61  AYSVLYRMREASISPNVITYNSLIAAATKNGSLEQSLNLFEEMLQSGITPDALCYTTLMQ 120

Query: 121 CYHKIVKPDETNRVFEEIPLCVKVTACLLERLKEG 156
           CYH++VKPDE NRVFEEIPLC+KVTACLLE+LKEG
Sbjct: 121 CYHQMVKPDEGNRVFEEIPLCIKVTACLLEKLKEG 155

[Close]

BLAST of PI0013311.1 vs. NCBI nr
Match: KAA0032156.1 (putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK14401.1 putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 244.6 bits (623), Expect = 5.7e-61
Identity = 119/133 (89.47%), Postives = 126/133 (94.74%), Query Frame = 0


Query: 23  MQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVLYRMREASISPNVITYNS 82
           MQKAEI ITDAIRLGV PNVVTYN LIHGYCQF CMDAAYSVLYRMREASISPNVITYNS
Sbjct: 1   MQKAEIAITDAIRLGVLPNVVTYNFLIHGYCQFRCMDAAYSVLYRMREASISPNVITYNS 60

Query: 83  LIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKIVKPDETNRVFEEIPLCV 142
           LIAAAT+NGSL+QS+NLFEEMLQ GITPDALCYTTLMQCY+K+VKPDE NRVFE IPLC+
Sbjct: 61  LIAAATKNGSLEQSLNLFEEMLQLGITPDALCYTTLMQCYNKMVKPDEANRVFEGIPLCI 120

Query: 143 KVTACLLERLKEG 156
           KVTACLLE+LKEG
Sbjct: 121 KVTACLLEKLKEG 133

[Close]

BLAST of PI0013311.1 vs. NCBI nr
Match: XP_008442168.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008442169.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo] >XP_008442170.1 PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis melo])

HSP 1 Score: 204.5 bits (519), Expect = 6.5e-49
Identity = 103/140 (73.57%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDA 60
           MVCK+S + LNICV+S CKSQQMQKAE VI D IR+GV PNVVTYN+LI GYC+FS MDA
Sbjct: 1   MVCKYSTKFLNICVASFCKSQQMQKAEAVIIDGIRIGVLPNVVTYNTLIDGYCRFSGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREA ISP+VITYNSLIA ATRN SL+QS++LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVLYRMREAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHKIVKPDETNRVFEEIPL 141
           C+  + KPDE  RVF++I L
Sbjct: 121 CFFILGKPDEAYRVFKDIIL 140

[Close]

BLAST of PI0013311.1 vs. NCBI nr
Match: XP_022147934.1 (putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147935.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147936.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147937.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia] >XP_022147938.1 putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charantia])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 101/140 (72.14%), Postives = 118/140 (84.29%), Query Frame = 0


Query: 1   MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDA 60
           MVCKFS + LNICV+S CKS+QMQKAE VI D IRLGV P+VVTYN+L+ GYC+F  MDA
Sbjct: 1   MVCKFSTKFLNICVASYCKSRQMQKAEAVIIDGIRLGVLPDVVTYNTLLDGYCRFIGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ 120
           AYSV+YRMREA ISP+VITYNSLIA ATRN SL+QS++LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVIYRMREAGISPDVITYNSLIAGATRNCSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHKIVKPDETNRVFEEIPL 141
           C+ ++ KPDE NRVF++I L
Sbjct: 121 CFFRLGKPDEANRVFKDIIL 140

[Close]

BLAST of PI0013311.1 vs. NCBI nr
Match: XP_031740560.1 (putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus] >KAE8649736.1 hypothetical protein Csa_012878 [Cucumis sativus])

HSP 1 Score: 202.6 bits (514), Expect = 2.5e-48
Identity = 102/140 (72.86%), Postives = 117/140 (83.57%), Query Frame = 0


Query: 1   MVCKFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDA 60
           MVCK+S + LNICV+S CKSQQMQKAE VI D IR+GV P+VVTYN+LI GYC+FS MDA
Sbjct: 1   MVCKYSTKFLNICVASFCKSQQMQKAEAVIIDGIRIGVLPDVVTYNTLIDGYCRFSGMDA 60

Query: 61  AYSVLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ 120
           AYSVLYRMREA ISP+VITYNSLIA ATRN SL+QS++LFEEMLQSGITPD   Y TLM 
Sbjct: 61  AYSVLYRMREAGISPDVITYNSLIAGATRNFSLEQSLDLFEEMLQSGITPDIWSYNTLMH 120

Query: 121 CYHKIVKPDETNRVFEEIPL 141
           C+  + KPDE  RVF++I L
Sbjct: 121 CFFILGKPDEAYRVFKDIIL 140

[Close]

BLAST of PI0013311.1 vs. TAIR 10
Match: AT5G46680.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 137.1 bits (344), Expect = 1.2e-32
Identity = 67/132 (50.76%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 6   SVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVL 65
           S +LLNI V+SLCK + +++AE ++ D IRLGV P+V+TYN+LI GY +F  +D AY+V 
Sbjct: 12  STKLLNISVNSLCKFRNLERAETLLIDGIRLGVLPDVITYNTLIKGYTRFIGIDEAYAVT 71

Query: 66  YRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKI 125
            RMREA I P+V TYNSLI+ A +N  L + + LF+EML SG++PD   Y TLM CY K+
Sbjct: 72  RRMREAGIEPDVTTYNSLISGAAKNLMLNRVLQLFDEMLHSGLSPDMWSYNTLMSCYFKL 131

Query: 126 VKPDETNRVFEE 138
            +  E  ++  E
Sbjct: 132 GRHGEAFKILHE 143

[Close]

BLAST of PI0013311.1 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 2.6e-19
Identity = 50/133 (37.59%), Postives = 77/133 (57.89%), Query Frame = 0


Query: 4   KFSVRLLNICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYS 63
           K +V + N  + SLCK + ++ A  + T+    G+RPNVVTYNSLI+  C +     A  
Sbjct: 255 KANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASR 314

Query: 64  VLYRMREASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYH 123
           +L  M E  I+PNV+T+N+LI A  + G L ++  L EEM+Q  I PD + Y  L+  + 
Sbjct: 315 LLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFC 374

Query: 124 KIVKPDETNRVFE 137
              + DE  ++F+
Sbjct: 375 MHNRLDEAKQMFK 387

[Close]

BLAST of PI0013311.1 vs. TAIR 10
Match: AT1G62680.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-19
Identity = 49/128 (38.28%), Postives = 79/128 (61.72%), Query Frame = 0


Query: 11  NICVSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVLYRMRE 70
           N  + SLCK++++  A     +  R G+RPNVVTY +L++G C  S    A  +L  M +
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253

Query: 71  ASISPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQ--CYHKIVKP 130
             I+PNVITY++L+ A  +NG + ++  LFEEM++  I PD + Y++L+   C H  +  
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRI-- 313

Query: 131 DETNRVFE 137
           DE N++F+
Sbjct: 314 DEANQMFD 319

[Close]

BLAST of PI0013311.1 vs. TAIR 10
Match: AT1G05670.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-18
Identity = 41/125 (32.80%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 14  VSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVLYRMREASI 73
           ++  CK+  M+ A  V    I+ G  PNVVTY +LI G C+   +D+A  +L+ M +  +
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 74  SPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKIVKPDETNR 133
            PN+ TYNS++    ++G++++++ L  E   +G+  D + YTTLM  Y K  + D+   
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 134 VFEEI 139
           + +E+
Sbjct: 548 ILKEM 552

[Close]

BLAST of PI0013311.1 vs. TAIR 10
Match: AT1G05670.2 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 88.6 bits (218), Expect = 4.8e-18
Identity = 41/125 (32.80%), Postives = 73/125 (58.40%), Query Frame = 0


Query: 14  VSSLCKSQQMQKAEIVITDAIRLGVRPNVVTYNSLIHGYCQFSCMDAAYSVLYRMREASI 73
           ++  CK+  M+ A  V    I+ G  PNVVTY +LI G C+   +D+A  +L+ M +  +
Sbjct: 428 INGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 487

Query: 74  SPNVITYNSLIAAATRNGSLQQSINLFEEMLQSGITPDALCYTTLMQCYHKIVKPDETNR 133
            PN+ TYNS++    ++G++++++ L  E   +G+  D + YTTLM  Y K  + D+   
Sbjct: 488 QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 547

Query: 134 VFEEI 139
           + +E+
Sbjct: 548 ILKEM 552

The following BLAST results are available for this feature:

BLAST of PI0013311.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0C043	5.2e-33	57.36	Putative pentatricopeptide repeat-containing protein At4g17915 OS=Arabidopsis th...	[more]
Q56XR6	1.7e-31	50.76	Pentatricopeptide repeat-containing protein At5g46680 OS=Arabidopsis thaliana OX...	[more]
Q9CAM8	3.6e-18	37.59	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]
Q3ECK2	6.2e-18	38.28	Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidop...	[more]
Q0WVK7	6.8e-17	32.80	Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidop...	[more]

BLAST of PI0013311.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KR32	7.4e-75	90.97	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G292240 PE=4 SV=1	[more]
A0A5A7SQ67	2.7e-61	89.47	Putative pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa...	[more]
A0A1S3B4M5	3.1e-49	73.57	putative pentatricopeptide repeat-containing protein At4g17915 OS=Cucumis melo O...	[more]
A0A6J1D2P0	5.4e-49	72.14	putative pentatricopeptide repeat-containing protein At4g17915 OS=Momordica char...	[more]
A0A6J1IFW8	4.5e-48	72.14	putative pentatricopeptide repeat-containing protein At4g17915 isoform X1 OS=Cuc...	[more]

BLAST of PI0013311.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637314.1	1.5e-74	90.97	hypothetical protein CSA_019100 [Cucumis sativus] >KGN50867.1 hypothetical prote...	[more]
KAA0032156.1	5.7e-61	89.47	putative pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] ...	[more]
XP_008442168.1	6.5e-49	73.57	PREDICTED: putative pentatricopeptide repeat-containing protein At4g17915 [Cucum...	[more]
XP_022147934.1	1.1e-48	72.14	putative pentatricopeptide repeat-containing protein At4g17915 [Momordica charan...	[more]
XP_031740560.1	2.5e-48	72.86	putative pentatricopeptide repeat-containing protein At4g17915 [Cucumis sativus]...	[more]

BLAST of PI0013311.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G46680.1	1.2e-32	50.76	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G63150.1	2.6e-19	37.59	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G62680.1	4.4e-19	38.28	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G05670.1	4.8e-18	32.80	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT1G05670.2	4.8e-18	32.80	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 3..154 e-value: 3.7E-35 score: 123.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 43..77 e-value: 1.8E-9 score: 35.2 coord: 78..112 e-value: 1.8E-7 score: 28.9
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 30..86 e-value: 3.2E-15 score: 56.0
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 41..75 score: 12.090371
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 76..110 score: 12.474017
None	No IPR available	PANTHER	PTHR47932:SF33	OS02G0793200 PROTEIN	coord: 1..141
None	No IPR available	PANTHER	PTHR47932	ATPASE EXPRESSION PROTEIN 3	coord: 1..141

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0013311	PI0013311	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013311.1-exon	PI0013311.1-exon-chr10:9878464..9879684	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013311.1-three_prime_utr	PI0013311.1-three_prime_utr-chr10:9878464..9879071	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013311.1-cds	PI0013311.1-cds-chr10:9879072..9879539	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0013311.1-five_prime_utr	PI0013311.1-five_prime_utr-chr10:9879540..9879684	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0013311.1	PI0013311.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding