PI0012006.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0012006.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	NBS-LRR type resistance protein
Location	chr09: 16016359 .. 16017773 (-)
Sequence length	861
RNA-Seq Expression	PI0012006.1
Synteny	PI0012006.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACGCGGAAGCAGACAATGCCTATGACCGTCAAGTGTCCCTCCTGCCTCTCGCCGGTCTGCCGCTCGTACTACCTCTGCCTGAAAGAATGAGACAAGGAAAGGGTGAGTATAAACTTATACTCAGTAAGAGGGAAAAAGCTACTATAAAGCTAGGGTTGGATAGTTATCTTCCTATGTCATCCCGGTGCCCGGTAGTCTAGGAATCCCGTAGGAGTTCCAAATCAGTCTAGGGATCCCGTAGGAGTCCCATATCAGTCTGGTGACCCGAAGGTCGCACCCATCAGTCTAGTGATCCCGTCGGATGCACCCATAGTCCGGGGTTCCCGTCGGATACACCCATCAGAGCTGGTGATCCCGTAGAATTGCACCTATCAGTCTGGTGTTCCCGTAGGAGACACCCTTCAGGCAACCAAGTATGATATAGCTAAAGATAAGTACCCCCCCAGAGTAACATACAAACAATCATGCAATGGGAAGAAAATCATACAATCACAGTCTAGGAATCCCGAAGGAGTTCCAACTCAGTCTGGTGGCCCGAAGGTCGCACCCTTCAGTCTAACATGCATGGTATTCATAATTCCATACTGAGCATAGCAAAATTCATGGTACATGAGTACATGAGTTCATAGAGATTAACGTGTAAAATACTAGAGAGTCTACTCATTCATGATACTTAATTCGTCTTGCGGGAATGAAATTCCAAAGCATACACTAGGGACAAATTCATGCTTCCTTGCAATGAATGGATAGCTAAATAGTAGAGAAGGACCCCTTACCTCGGATGCTAAGTCCACAAGCACCACACGACAAGGAAAAAGGCTAAACGCGAGAAGACAACCTCCAACATTTACTTCTCGACGAGGCAGCAAGCTACGCGACAAGAACTACACTACGCAAGAAAGATCAGAAACCAGAACGCGGAGAAGGACCAAAACCAAACCGCATAGAGGGAGCTTACCTCGCGACTAACTTGCGAAGAAGGAAGAGGCGGACAACACAACCTCGCGAACAAGAGAGACCAGGCGGGACGCGAGCTGAACGCGAACACACAGCGCGGCAAGGGAAGCTCGCGGAAATCCCTTTTAGCTTCGCGAGCTACTCCTTAGCTCGCGAACCACAGGCTGCAAGGGAGGCTTGCGAACAACTTCTGAGCTTCGCGGACTTCCTTAGTTCGCGGACAACACCCCACTTCGCGAACAAGGATCTGCCAAAGAGGAGTCTTACTTCGCGGGATGAACATTTTAAGCAAAACGCGAAGGGAAACTCGGAAAACTTACCAGAGAAGACTAAACGAGCGGGGAAGAACAAGGAAGCTCCTCCACACCACCACACTTCGCGAAAACAATCCAGAACTCTCAAACCACACGCCAAAGCTCTTTCCGGCGACAAGGGGCGTCGGGGAACCTCTTAA

mRNA sequence

ATGGACGCGGAAGCAGACAATGCCTATGACCGTCAAGTGTCCCTCCTGCCTCTCGCCGGTCTGCCGCTCGTACTACCTCTGCCTGAAAGAATGAGACAAGGAAAGGGTCGCACCCATCAGTCTAGTGATCCCGTCGGATGCACCCATAGTCCGGGGTTCCCGTCGGATACACCCATCAGAGCTGGTGATCCCGTAGAATTGCACCTATCAGTCTGGTGTTCCCGTAGGAGACACCCTTCAGGCAACCAAGAATCCCGAAGGAGTTCCAACTCAGTCTGGTGGCCCGAAGGTCGCACCCTTCAGTCTAACATGCATGCAAGCTACGCGACAAGAACTACACTACGCAAGAAAGATCAGAAACCAGAACGCGGAGAAGGACCAAAACCAAACCGCATAGAGGGAGCTTACCTCGCGACTAACTTGCGAAGAAGGAAGAGGCGGACAACACAACCTCGCGAACAAGAGAGACCAGGCGGGACGCGAGCTGAACGCGAACACACAGCGCGGCAAGGGAAGCTCGCGGAAATCCCTTTTAGCTTCGCGAGCTACTCCTTAGCTCGCGAACCACAGGCTGCAAGGGAGGCTTGCGAACAACTTCTGAGCTTCGCGGACTTCCTTAGTTCGCGGACAACACCCCACTTCGCGAACAAGGATCTGCCAAAGAGGAGTCTTACTTCGCGGGATGAACATTTTAAGCAAAACGCGAAGGGAAACTCGGAAAACTTACCAGAGAAGACTAAACGAGCGGGGAAGAACAAGGAAGCTCCTCCACACCACCACACTTCGCGAAAACAATCCAGAACTCTCAAACCACACGCCAAAGCTCTTTCCGGCGACAAGGGGCGTCGGGGAACCTCTTAA

Coding sequence (CDS)

ATGGACGCGGAAGCAGACAATGCCTATGACCGTCAAGTGTCCCTCCTGCCTCTCGCCGGTCTGCCGCTCGTACTACCTCTGCCTGAAAGAATGAGACAAGGAAAGGGTCGCACCCATCAGTCTAGTGATCCCGTCGGATGCACCCATAGTCCGGGGTTCCCGTCGGATACACCCATCAGAGCTGGTGATCCCGTAGAATTGCACCTATCAGTCTGGTGTTCCCGTAGGAGACACCCTTCAGGCAACCAAGAATCCCGAAGGAGTTCCAACTCAGTCTGGTGGCCCGAAGGTCGCACCCTTCAGTCTAACATGCATGCAAGCTACGCGACAAGAACTACACTACGCAAGAAAGATCAGAAACCAGAACGCGGAGAAGGACCAAAACCAAACCGCATAGAGGGAGCTTACCTCGCGACTAACTTGCGAAGAAGGAAGAGGCGGACAACACAACCTCGCGAACAAGAGAGACCAGGCGGGACGCGAGCTGAACGCGAACACACAGCGCGGCAAGGGAAGCTCGCGGAAATCCCTTTTAGCTTCGCGAGCTACTCCTTAGCTCGCGAACCACAGGCTGCAAGGGAGGCTTGCGAACAACTTCTGAGCTTCGCGGACTTCCTTAGTTCGCGGACAACACCCCACTTCGCGAACAAGGATCTGCCAAAGAGGAGTCTTACTTCGCGGGATGAACATTTTAAGCAAAACGCGAAGGGAAACTCGGAAAACTTACCAGAGAAGACTAAACGAGCGGGGAAGAACAAGGAAGCTCCTCCACACCACCACACTTCGCGAAAACAATCCAGAACTCTCAAACCACACGCCAAAGCTCTTTCCGGCGACAAGGGGCGTCGGGGAACCTCTTAA

Protein sequence

MDAEADNAYDRQVSLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDPVELHLSVWCSRRRHPSGNQESRRSSNSVWWPEGRTLQSNMHASYATRTTLRKKDQKPERGEGPKPNRIEGAYLATNLRRRKRRTTQPREQERPGGTRAEREHTARQGKLAEIPFSFASYSLAREPQAAREACEQLLSFADFLSSRTTPHFANKDLPKRSLTSRDEHFKQNAKGNSENLPEKTKRAGKNKEAPPHHHTSRKQSRTLKPHAKALSGDKGRRGTS

Homology

[Close]

BLAST of PI0012006.1 vs. ExPASy TrEMBL
Match: A0A5A7SYK3 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00450 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 14  SLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDP 65
           S LPL GLPL +PLPE++++ KGRTHQS DP GCT+  G P     ++ DP
Sbjct: 90  SFLPLVGLPLAVPLPEKLKKRKGRTHQSRDPEGCTYQSGDPKGYTYQSSDP 140

[Close]

BLAST of PI0012006.1 vs. ExPASy TrEMBL
Match: A0A5A7SW66 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001650 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.2e-07
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 14 SLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDP 65
          S LPL GLPL +PLPE++++ KGRTHQS DP GCT+  G P     ++ DP
Sbjct: 44 SFLPLVGLPLAVPLPEKLKKRKGRTHQSRDPEGCTYQSGDPKGYTYQSSDP 94

[Close]

BLAST of PI0012006.1 vs. ExPASy TrEMBL
Match: A0A5A7UEH0 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold190G001910 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-06
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 12 QVSLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDP 65
          Q S LPL GLPL +PLPE++++ K RTHQS DP GCT+    P     ++ DP
Sbjct: 33 QASFLPLVGLPLAIPLPEKLKKRKERTHQSRDPEGCTYQSSDPEGYTYQSSDP 85

[Close]

BLAST of PI0012006.1 vs. ExPASy TrEMBL
Match: A0A5A7ST90 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1876G00120 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.7e-06
Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 9   YDRQVSLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDPVELH 68
           Y    S LPL GLPL +PLPE++++ K RTHQS DP GCT+    P     ++ DP    
Sbjct: 26  YGLHASFLPLVGLPLAVPLPEKLKKKKERTHQSRDPEGCTYQSSDPEGYTYQSSDPEGC- 85

Query: 69  LSVWCSRRRHPSGNQESRRSSNSVWWPEGRTLQSNMHASYATRTTL 115
                           + +SS+    P+GRT Q + H  Y  ++++
Sbjct: 86  ----------------TYQSSD----PKGRTYQFSDHEGYTYQSSV 110

[Close]

BLAST of PI0012006.1 vs. ExPASy TrEMBL
Match: A0A5D3BNS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00330 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.1e-06
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 9  YDRQVSLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDP 65
          Y    S LPL GLPL +PLPE++++ K RTHQS DP GCT+    P     ++ DP
Sbjct: 15 YGLHASFLPLIGLPLAVPLPEKLKKRKERTHQSRDPEGCTYQSSDPEGCTYQSSDP 70

[Close]

BLAST of PI0012006.1 vs. NCBI nr
Match: KAA0035512.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 8.7e-07
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 14 SLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDP 65
          S LPL GLPL +PLPE++++ KGRTHQS DP GCT+  G P     ++ DP
Sbjct: 44 SFLPLVGLPLAVPLPEKLKKRKGRTHQSRDPEGCTYQSGDPKGYTYQSSDP 94

[Close]

BLAST of PI0012006.1 vs. NCBI nr
Match: KAA0035698.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK30848.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 8.7e-07
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 0


Query: 14  SLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDP 65
           S LPL GLPL +PLPE++++ KGRTHQS DP GCT+  G P     ++ DP
Sbjct: 90  SFLPLVGLPLAVPLPEKLKKRKGRTHQSRDPEGCTYQSGDPKGYTYQSSDP 140

[Close]

BLAST of PI0012006.1 vs. NCBI nr
Match: KAA0053614.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 7.4e-06
Identity = 27/53 (50.94%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 12 QVSLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDP 65
          Q S LPL GLPL +PLPE++++ K RTHQS DP GCT+    P     ++ DP
Sbjct: 33 QASFLPLVGLPLAIPLPEKLKKRKERTHQSRDPEGCTYQSSDPEGYTYQSSDP 85

[Close]

BLAST of PI0012006.1 vs. NCBI nr
Match: KAA0032435.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 9.6e-06
Identity = 36/106 (33.96%), Postives = 53/106 (50.00%), Query Frame = 0


Query: 9   YDRQVSLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDPVELH 68
           Y    S LPL GLPL +PLPE++++ K RTHQS DP GCT+    P     ++ DP    
Sbjct: 26  YGLHASFLPLVGLPLAVPLPEKLKKKKERTHQSRDPEGCTYQSSDPEGYTYQSSDPEGC- 85

Query: 69  LSVWCSRRRHPSGNQESRRSSNSVWWPEGRTLQSNMHASYATRTTL 115
                           + +SS+    P+GRT Q + H  Y  ++++
Sbjct: 86  ----------------TYQSSD----PKGRTYQFSDHEGYTYQSSV 110

[Close]

BLAST of PI0012006.1 vs. NCBI nr
Match: KAA0059775.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYJ99788.1 NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 1.3e-05
Identity = 27/56 (48.21%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 9  YDRQVSLLPLAGLPLVLPLPERMRQGKGRTHQSSDPVGCTHSPGFPSDTPIRAGDP 65
          Y    S LPL GLPL +PLPE++++ K RTHQS DP GCT+    P     ++ DP
Sbjct: 15 YGLHASFLPLIGLPLAVPLPEKLKKRKERTHQSRDPEGCTYQSSDPEGCTYQSSDP 70

The following BLAST results are available for this feature:

BLAST of PI0012006.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0012006.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SYK3	4.2e-07	54.90	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7SW66	4.2e-07	54.90	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UEH0	3.6e-06	50.94	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7ST90	4.7e-06	33.96	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BNS6	6.1e-06	48.21	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of PI0012006.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035512.1	8.7e-07	54.90	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0035698.1	8.7e-07	54.90	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYK30848.1 NBS-LRR t...	[more]
KAA0053614.1	7.4e-06	50.94	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0032435.1	9.6e-06	33.96	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0059775.1	1.3e-05	48.21	NBS-LRR type resistance protein [Cucumis melo var. makuwa] >TYJ99788.1 NBS-LRR t...	[more]

BLAST of PI0012006.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 148..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..129
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 220..261
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..176
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..62

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0012006	PI0012006	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012006.1-exon	PI0012006.1-exon-chr09:16016359..16016903	exon
PI0012006.1-exon	PI0012006.1-exon-chr09:16017203..16017269	exon
PI0012006.1-exon	PI0012006.1-exon-chr09:16017357..16017499	exon
PI0012006.1-exon	PI0012006.1-exon-chr09:16017668..16017773	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0012006.1-cds	PI0012006.1-cds-chr09:16016359..16016903	CDS
PI0012006.1-cds	PI0012006.1-cds-chr09:16017203..16017269	CDS
PI0012006.1-cds	PI0012006.1-cds-chr09:16017357..16017499	CDS
PI0012006.1-cds	PI0012006.1-cds-chr09:16017668..16017773	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0012006.1	PI0012006.1-protein	polypeptide