PI0011754.3 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0011754.3
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ferredoxin
Location	chr12: 17457353 .. 17459318 (-)
Sequence length	1811
RNA-Seq Expression	PI0011754.3
Synteny	PI0011754.3

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGCATCATTCAACGACTTACGTCTCCCTTTTGATTTCCTATCCTCGCTTTCTCCGCTGCCTCTCTTTCTGTAAGCTTCTCTTCTCCTATTTCCTTCCTTTGTTTATGTGTTATTTCTATGTTTTGCTATGAAAATCAACTAATTGCGTCTCAACATATTTGTGCCCTAACTATCTCCCTCATCAAAATGCTTCTTTCCTTTTCCCATTTCGCTATTTACTGTATTTCCTCATTTCCCATTTTGTCTTCTCTTTTTACATCACTACCTTTATTTGTTGTTTTGGATCGTTTTAGTTAGAGAATATCCAACTGTGCTAACTTCTGTTTTTTCAAATAAAACCTTTGGATTCTGTTGACATTTTGTTCTTAACAAATGCAAACTGATCTGGGTTGGAATTGGATGGTTTTGTTTATTACTTATGGAGCTTCGAGTGAAGAGCAGAGAAAGCCCTTAGGTTGCATCTTCTCATAATGCTCCATACATCAATTTGCCTCCGTTAACATTGAATAGCTTTCTGCTGTGCTACCTCATGTGTTCTTTCAAGAGGCATACAAAATCACTACACCTATCATGTATTCCATTCCTCTATGCTCTGAATTTAAACACTGGATGCTTAGTTTTCACACACGCAAACACTCCTTTACTGTTAAATGATATAACAATTAATTTACCTTCCTCCTTTTTAAGCTTTCGAGTCAATAGATGATTTATAACGTTATTAGAGCGGGGGGATCCTATTTCAAACTCGTCCATTGTTATTTCCTTCTCAACTAATATCGATTTCTACTTGTTGGTTCTTTCACATAATTTCAAGTTCACAAGTGAGAGGTGTGTTAGAAGATATAATATTAAATTTACCTTCCCTCCATTAGTTTAAGCTTTTCGGTCAATTGGTGTTTAAAGAATTAAAAAGGTAAATGAAGAAGTTGAGCATTTTCTGCTGAATTGCGAGATAAAATGAAAAAGAAAATGGTTCTGCAATTTTCATACCTCTGCCATATGGAAGTTCATAGTTAGAGTATGATCATCATCCATTCTGGTACTTGCTGGATGTGCTCTATATTTTTAATATTCTGTTTGATCTTTGCCACTTGCTTGTTCCCTAGTGTAGCCTTTATTTTTCTCACATGCTTTTAGGTTTTGATTGATTTGATTTGTAAACAACACCAGTTTAAATGTGTTTCATGAATTTAGGAGCAGAAATGTCAACCATGTCAACTGCAAAGCTCCCTGCCCACTTCATGTACAACATGCAATCTAAAAATCAACTCGGTAGTGTCATCATCAAGTGTCCATCGTCAATTGGATCTACGACAAACATTTCGAAATCCTTTGGCTTGAATTCACGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTTCAAAATTAAACTTGTCGAACCATGTGGGACAGAGCATGAGTTTGAGGCATCTGATGATAGCTATATTCTTGATGCAGCTGAAGAAGCGGGAGTAGACTTACCTTATTCTTGCAGGGCAGGTGCATGTTCTACGTGCGCTGGTAAAATAGTTTCGGGTTCGGTTGATCAGTCAGACGGGTCGTTCCTTGATGATGATCAAATGGCAAAGGGTTACTTGTTAACCTGTGTTTCACTCCCAACTGCAGATTGTGTGATTCACACACACAAGGAAGGAGAACTGATCTGAGGATGATAGTTTAAATGATACAGAGTGTTTTCTTGTTTCATGGTTTTCATTTGTAATGTCATATTATTAAAAAAAATGAAAAAGTAGAAAAAGATAAATAAAATGTGTGAACTTTCTCGTCATGCATTTTCCTTGTGATTATCTAGTAACATCGAGAAATTTTGTATAGTTCTTTCTTTGAACTTATGGACATTGACATTCTCATTATATCATCGAAAAATTACTAAACAAATATAAATAAAATGTCATAAAATGTGATATTATGTTAATAATAAGGATTTTAAACTTGCTTAAAAA

mRNA sequence

TTCGCATCATTCAACGACTTACGTCTCCCTTTTGATTTCCTATCCTCGCTTTCTCCGCTGCCTCTCTTTCTGTAAGCTTCTCTTCTCCTATTTCCTTCCTTTGTTTATGTGTTATTTCTATGTTTTGCTATGAAAATCAACTAATTGCGTCTCAACATATTTGTGCCCTAACTATCTCCCTCATCAAAATGCTTCTTTCCTTTTCCCATTTCGCTATTTACTGTATTTCCTCATTTCCCATTTTGTCTTCTCTTTTTACATCACTACCTTTATTTGTTGTTTTGGATCGTTTTAGTTAGAGAATATCCAACTGTGCTAACTTCTGTTTTTTCAAATAAAACCTTTGGATTCTGTTGACATTTTGTTCTTAACAAATGCAAACTGATCTGGGTTGGAATTGGATGGTTTTGTTTATTACTTATGGAGCTTCGAGTGAAGAGCAGAGAAAGCCCTTAGGTTGCATCTTCTCATAATGCTCCATACATCAATTTGCCTCCGTTAACATTGAATAGCTTTCTGCTGTGCTACCTCATGTGTTCTTTCAAGAGGCATACAAAATCACTACACCTATCATGTATTCCATTCCTCTATGCTCTGAATTTAAACACTGGATGCTTAGTTTTCACACACGCAAACACTCCTTTACTGTTAAATGATATAACAATTAATTTACCTTCCTCCTTTTTAAGCTTTCGAGTCAATAGATGATTTATAACGTTATTAGAGCGGGGGGATCCTATTTCAAACTCGTCCATTGTTATTTCCTTCTCAACTAATATCGATTTCTACTTGTTGGTTCTTTCACATAATTTCAAGTTCACAAGTGAGAGGTGTGTTAGAAGATATAATATTAAATTTACCTTCCCTCCATTAGTTTAAGCTTTTCGGTCAATTGGTGTTTAAAGAATTAAAAAGGTAAATGAAGAAGTTGAGCATTTTCTGCTGAATTGCGAGATAAAATGAAAAAGAAAATGGTTCTGCAATTTTCATACCTCTGCCATATGGAAGTTCATAGTTAGAGTATGATCATCATCCATTCTGGAGCAGAAATGTCAACCATGTCAACTGCAAAGCTCCCTGCCCACTTCATGTACAACATGCAATCTAAAAATCAACTCGGTAGTGTCATCATCAAGTGTCCATCGTCAATTGGATCTACGACAAACATTTCGAAATCCTTTGGCTTGAATTCACGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTTCAAAATTAAACTTGTCGAACCATGTGGGACAGAGCATGAGTTTGAGGCATCTGATGATAGCTATATTCTTGATGCAGCTGAAGAAGCGGGAGTAGACTTACCTTATTCTTGCAGGGCAGGTGCATGTTCTACGTGCGCTGGTAAAATAGTTTCGGGTTCGGTTGATCAGTCAGACGGGTCGTTCCTTGATGATGATCAAATGGCAAAGGGTTACTTGTTAACCTGTGTTTCACTCCCAACTGCAGATTGTGTGATTCACACACACAAGGAAGGAGAACTGATCTGAGGATGATAGTTTAAATGATACAGAGTGTTTTCTTGTTTCATGGTTTTCATTTGTAATGTCATATTATTAAAAAAAATGAAAAAGTAGAAAAAGATAAATAAAATGTGTGAACTTTCTCGTCATGCATTTTCCTTGTGATTATCTAGTAACATCGAGAAATTTTGTATAGTTCTTTCTTTGAACTTATGGACATTGACATTCTCATTATATCATCGAAAAATTACTAAACAAATATAAATAAAATGTCATAAAATGTGATATTATGTTAATAATAAGGATTTTAAACTTGCTTAAAAA

Coding sequence (CDS)

ATGATCATCATCCATTCTGGAGCAGAAATGTCAACCATGTCAACTGCAAAGCTCCCTGCCCACTTCATGTACAACATGCAATCTAAAAATCAACTCGGTAGTGTCATCATCAAGTGTCCATCGTCAATTGGATCTACGACAAACATTTCGAAATCCTTTGGCTTGAATTCACGTCCCTCATTCAGAGCCTGTGCAATGGCAGTTTTCAAAATTAAACTTGTCGAACCATGTGGGACAGAGCATGAGTTTGAGGCATCTGATGATAGCTATATTCTTGATGCAGCTGAAGAAGCGGGAGTAGACTTACCTTATTCTTGCAGGGCAGGTGCATGTTCTACGTGCGCTGGTAAAATAGTTTCGGGTTCGGTTGATCAGTCAGACGGGTCGTTCCTTGATGATGATCAAATGGCAAAGGGTTACTTGTTAACCTGTGTTTCACTCCCAACTGCAGATTGTGTGATTCACACACACAAGGAAGGAGAACTGATCTGA

Protein sequence

MIIIHSGAEMSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVFKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI

Homology

[Close]

BLAST of PI0011754.3 vs. ExPASy Swiss-Prot
Match: P27788 (Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.0e-43
Identity = 85/132 (64.39%), Postives = 100/132 (75.76%), Query Frame = 0


Query: 31  QLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVFKIKLVEPCGTEHEFEASDDSY 90
           Q     +K PSS+   + ++K   L +       AMAV+K+KLV P G EHEF+A DD+Y
Sbjct: 20  QASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKVKLVGPEGEEHEFDAPDDAY 79

Query: 91  ILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDDQMAKGYLLTCVSLPTA 150
           ILDAAE AGV+LPYSCRAGACSTCAGKI SGSVDQSDGSFLDD Q  +GY+LTCVS P +
Sbjct: 80  ILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKS 139

Query: 151 DCVIHTHKEGEL 163
           DCVIHTHKEG+L
Sbjct: 140 DCVIHTHKEGDL 151

[Close]

BLAST of PI0011754.3 vs. ExPASy Swiss-Prot
Match: Q9ZQG8 (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.3e-42
Identity = 91/154 (59.09%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 13  MSTAKLPAHFMYNMQSKNQLGSVIIKCPS---SIGSTTNISKSFGLN-SRPSFRACAMAV 72
           M+T ++ +  M     ++Q  + +I   S   S+GST  +S+SFGL  S  S  A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 73  FKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDG 132
           +K+KL+ P G E EFE  DD YILDAAEEAGVDLPYSCRAGACSTCAG+IVSG+VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 133 SFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGEL 163
           SFL+D  + KGY+LTCV+ P +DCVIHTHKE EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of PI0011754.3 vs. ExPASy Swiss-Prot
Match: P94044 (Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.3e-38
Identity = 84/154 (54.55%), Postives = 103/154 (66.88%), Query Frame = 0


Query: 10  MSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVF 69
           MST +  +LPA             +      S  G     +++ G      F A A AV 
Sbjct: 1   MSTATAPRLPAPRSGASYHYQTTAAPAANTLSFAGHARQAARASGPRLSSRFVASAAAVL 60

Query: 70  -KIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDG 129
            K+KLV P GTEHEFEA DD+YIL+AAE AGV+LP+SCRAG+CSTCAG++ +G VDQS+G
Sbjct: 61  HKVKLVGPDGTEHEFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEG 120

Query: 130 SFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGEL 163
           SFLDD QMA+GYLLTC+S P ADCVIHTHKE +L
Sbjct: 121 SFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154

[Close]

BLAST of PI0011754.3 vs. ExPASy Swiss-Prot
Match: P14937 (Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 8.2e-37
Identity = 70/96 (72.92%), Postives = 82/96 (85.42%), Query Frame = 0


Query: 67  AVFKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQS 126
           AV+K+KL+ P G E+EFE  DD +ILDAAEEAGVDLPYSCRAGACSTCAG+IV G VDQS
Sbjct: 2   AVYKVKLIGPEGEENEFEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQS 61

Query: 127 DGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGEL 163
           +GSFL+DD   KG++LTCV+ P +DCVIHTHKE EL
Sbjct: 62  EGSFLEDDHFEKGFVLTCVAYPQSDCVIHTHKETEL 97

[Close]

BLAST of PI0011754.3 vs. ExPASy Swiss-Prot
Match: P14936 (Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.2e-35
Identity = 70/96 (72.92%), Postives = 79/96 (82.29%), Query Frame = 0


Query: 67  AVFKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQS 126
           AV+K+KL+ P G E+EF+  DD YILDAAEEAGVDLPYSCRAGACSTCAGKI  G VDQS
Sbjct: 2   AVYKVKLIGPDGQENEFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQS 61

Query: 127 DGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGEL 163
           DGSFL+D    KGY+LTCV+ P +D VIHTHKE EL
Sbjct: 62  DGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97

[Close]

BLAST of PI0011754.3 vs. ExPASy TrEMBL
Match: A0A0A0LY90 (Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_1G163160 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 8.4e-77
Identity = 143/154 (92.86%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 10  MSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVF 69
           MSTMSTAKLP HFMYN QSKNQLGS IIKCPSSIGST NI KSFGLNSRPSFRACAMA F
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMAAF 60

Query: 70  KIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGS 129
           KIKLVEPCG EHEFEASDD+YILDAAEEAG+DLPYSCRAGACSTCAGKIVSGSVDQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSDGS 120

Query: 130 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           FLDDDQMA GYLLTC+SLPTADCVIHTHKEGELI
Sbjct: 121 FLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of PI0011754.3 vs. ExPASy TrEMBL
Match: A0A5A7SWN7 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00770 PE=3 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.6e-75
Identity = 144/154 (93.51%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 10  MSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVF 69
           MSTMSTAKLP HFMYN QSKNQLGS IIKCPSSIGST NI KSFGLNSRPSFRA AMAVF
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60

Query: 70  KIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGS 129
           KIKLVEPCG EHEFEASDD+YILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSV+QSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120

Query: 130 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           FLDDDQMAKGYLLTCVSLPTADCVIHTHKE ELI
Sbjct: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154

[Close]

BLAST of PI0011754.3 vs. ExPASy TrEMBL
Match: A0A5D3E4N5 (Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003470 PE=3 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 7.1e-68
Identity = 132/141 (93.62%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 23  MYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVFKIKLVEPCGTEHE 82
           MYN QSKNQLGS IIKCPSSIGST NI KSFGLNSRPSFRA AMAVFKIKLVEPCG EHE
Sbjct: 1   MYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHE 60

Query: 83  FEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDDQMAKGYLL 142
           FEASDD+YILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSV+QSDGSFLDDDQMAKGYLL
Sbjct: 61  FEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLL 120

Query: 143 TCVSLPTADCVIHTHKEGELI 164
           TCVSLPTADCVIHTHKE ELI
Sbjct: 121 TCVSLPTADCVIHTHKEEELI 141

[Close]

BLAST of PI0011754.3 vs. ExPASy TrEMBL
Match: A0A6J1CLH4 (Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111012698 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 3.0e-66
Identity = 128/154 (83.12%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 10  MSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVF 69
           MSTMSTA LP+ F  N   KN+    IIKCPSSIGS +NIS+SFGL S PSFR  AMAV+
Sbjct: 1   MSTMSTATLPSRFTLNAPCKNRYRITIIKCPSSIGSASNISRSFGLKSSPSFRTSAMAVY 60

Query: 70  KIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGS 129
           KIKLVEPCG EHEFEASDD+YILDAAEEAGVDLPYSCRAGACSTCAGK+VSGSVDQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVSGSVDQSDGS 120

Query: 130 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           FLDD QMA+GYLLTCVSLPTADCVIHTHKEGELI
Sbjct: 121 FLDDTQMAEGYLLTCVSLPTADCVIHTHKEGELI 154

[Close]

BLAST of PI0011754.3 vs. ExPASy TrEMBL
Match: A0A6J1FZ83 (Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111449248 PE=3 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 8.1e-64
Identity = 125/157 (79.62%), Postives = 137/157 (87.26%), Query Frame = 0


Query: 9   EMSTMSTAKLPAHFMYNMQS--KNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAM 68
           +MSTMSTAKLP+  M+N  +  KNQ  S IIKCPSSIGST+NISKSFGL S PS R  AM
Sbjct: 63  KMSTMSTAKLPSRTMFNTSAPCKNQFRSTIIKCPSSIGSTSNISKSFGLKSSPSSRTTAM 122

Query: 69  AVFKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQS 128
           AV+KIKL+EPCG EHEFEASDD+YILDAAEEAG+DLPYSCRAGACSTCAGK VSGSVDQS
Sbjct: 123 AVYKIKLIEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKFVSGSVDQS 182

Query: 129 DGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           DGSFLDD QM +GYLLTC+S PT+DCVI THKEGELI
Sbjct: 183 DGSFLDDSQMEEGYLLTCISHPTSDCVILTHKEGELI 219

[Close]

BLAST of PI0011754.3 vs. NCBI nr
Match: KGN64931.1 (hypothetical protein Csa_022774 [Cucumis sativus])

HSP 1 Score: 296.2 bits (757), Expect = 1.7e-76
Identity = 143/154 (92.86%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 10  MSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVF 69
           MSTMSTAKLP HFMYN QSKNQLGS IIKCPSSIGST NI KSFGLNSRPSFRACAMA F
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNILKSFGLNSRPSFRACAMAAF 60

Query: 70  KIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGS 129
           KIKLVEPCG EHEFEASDD+YILDAAEEAG+DLPYSCRAGACSTCAGKIVSGSVDQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGIDLPYSCRAGACSTCAGKIVSGSVDQSDGS 120

Query: 130 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           FLDDDQMA GYLLTC+SLPTADCVIHTHKEGELI
Sbjct: 121 FLDDDQMANGYLLTCISLPTADCVIHTHKEGELI 154

[Close]

BLAST of PI0011754.3 vs. NCBI nr
Match: KAA0035450.1 (ferredoxin, root R-B1-like [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 9.5e-75
Identity = 144/154 (93.51%), Postives = 146/154 (94.81%), Query Frame = 0


Query: 10  MSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVF 69
           MSTMSTAKLP HFMYN QSKNQLGS IIKCPSSIGST NI KSFGLNSRPSFRA AMAVF
Sbjct: 1   MSTMSTAKLPTHFMYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVF 60

Query: 70  KIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGS 129
           KIKLVEPCG EHEFEASDD+YILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSV+QSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGS 120

Query: 130 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           FLDDDQMAKGYLLTCVSLPTADCVIHTHKE ELI
Sbjct: 121 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEEELI 154

[Close]

BLAST of PI0011754.3 vs. NCBI nr
Match: XP_038893731.1 (ferredoxin, root R-B2 [Benincasa hispida] >XP_038893732.1 ferredoxin, root R-B2 [Benincasa hispida])

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-69
Identity = 133/154 (86.36%), Postives = 141/154 (91.56%), Query Frame = 0


Query: 10  MSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVF 69
           MSTMSTAKL  HFMYN   KN+L S IIKCPSSI S +NISK FGL SRPSFRACAMAV+
Sbjct: 1   MSTMSTAKLSTHFMYNAPCKNRLRSTIIKCPSSISSMSNISKFFGLKSRPSFRACAMAVY 60

Query: 70  KIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGS 129
           KIKLVEP GTEHEFEASDD+YILDAAEEAG+DLPYSCRAGACSTCAGK+VSGSVDQSDGS
Sbjct: 61  KIKLVEPSGTEHEFEASDDAYILDAAEEAGIDLPYSCRAGACSTCAGKMVSGSVDQSDGS 120

Query: 130 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           FLDD QMA+GYLLTCVSLPTADCVIHTHKEGEL+
Sbjct: 121 FLDDSQMAEGYLLTCVSLPTADCVIHTHKEGELL 154

[Close]

BLAST of PI0011754.3 vs. NCBI nr
Match: TYK31073.1 (ferredoxin, root R-B2 [Cucumis melo var. makuwa])

HSP 1 Score: 266.5 bits (680), Expect = 1.5e-67
Identity = 132/141 (93.62%), Postives = 134/141 (95.04%), Query Frame = 0


Query: 23  MYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVFKIKLVEPCGTEHE 82
           MYN QSKNQLGS IIKCPSSIGST NI KSFGLNSRPSFRA AMAVFKIKLVEPCG EHE
Sbjct: 1   MYNTQSKNQLGSTIIKCPSSIGSTRNIWKSFGLNSRPSFRARAMAVFKIKLVEPCGKEHE 60

Query: 83  FEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDDQMAKGYLL 142
           FEASDD+YILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSV+QSDGSFLDDDQMAKGYLL
Sbjct: 61  FEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVNQSDGSFLDDDQMAKGYLL 120

Query: 143 TCVSLPTADCVIHTHKEGELI 164
           TCVSLPTADCVIHTHKE ELI
Sbjct: 121 TCVSLPTADCVIHTHKEEELI 141

[Close]

BLAST of PI0011754.3 vs. NCBI nr
Match: XP_022142635.1 (ferredoxin, root R-B2 [Momordica charantia])

HSP 1 Score: 261.2 bits (666), Expect = 6.2e-66
Identity = 128/154 (83.12%), Postives = 136/154 (88.31%), Query Frame = 0


Query: 10  MSTMSTAKLPAHFMYNMQSKNQLGSVIIKCPSSIGSTTNISKSFGLNSRPSFRACAMAVF 69
           MSTMSTA LP+ F  N   KN+    IIKCPSSIGS +NIS+SFGL S PSFR  AMAV+
Sbjct: 1   MSTMSTATLPSRFTLNAPCKNRYRITIIKCPSSIGSASNISRSFGLKSSPSFRTSAMAVY 60

Query: 70  KIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGS 129
           KIKLVEPCG EHEFEASDD+YILDAAEEAGVDLPYSCRAGACSTCAGK+VSGSVDQSDGS
Sbjct: 61  KIKLVEPCGKEHEFEASDDTYILDAAEEAGVDLPYSCRAGACSTCAGKVVSGSVDQSDGS 120

Query: 130 FLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           FLDD QMA+GYLLTCVSLPTADCVIHTHKEGELI
Sbjct: 121 FLDDTQMAEGYLLTCVSLPTADCVIHTHKEGELI 154

[Close]

BLAST of PI0011754.3 vs. TAIR 10
Match: AT2G27510.1 (ferredoxin 3 )

HSP 1 Score: 174.1 bits (440), Expect = 9.2e-44
Identity = 91/154 (59.09%), Postives = 112/154 (72.73%), Query Frame = 0


Query: 13  MSTAKLPAHFMYNMQSKNQLGSVIIKCPS---SIGSTTNISKSFGLN-SRPSFRACAMAV 72
           M+T ++ +  M     ++Q  + +I   S   S+GST  +S+SFGL  S  S  A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 73  FKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDG 132
           +K+KL+ P G E EFE  DD YILDAAEEAGVDLPYSCRAGACSTCAG+IVSG+VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 133 SFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGEL 163
           SFL+D  + KGY+LTCV+ P +DCVIHTHKE EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

[Close]

BLAST of PI0011754.3 vs. TAIR 10
Match: AT1G10960.1 (ferredoxin 1 )

HSP 1 Score: 146.0 bits (367), Expect = 2.7e-35
Identity = 71/114 (62.28%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 48  NISKSFGLNSRPS--FRACAMAVFKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPYS 107
           N    FGL S  +   R  AMA +K+K + P G E E E  +D Y+LDAAEEAG+DLPYS
Sbjct: 32  NTQSLFGLKSSTARGGRVTAMATYKVKFITPEG-EQEVECEEDVYVLDAAEEAGLDLPYS 91

Query: 108 CRAGACSTCAGKIVSGSVDQSDGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKE 160
           CRAG+CS+CAGK+VSGS+DQSD SFLDD+QM++GY+LTCV+ PT+D VI THKE
Sbjct: 92  CRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKE 144

[Close]

BLAST of PI0011754.3 vs. TAIR 10
Match: AT1G60950.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 143.3 bits (360), Expect = 1.7e-34
Identity = 69/120 (57.50%), Postives = 89/120 (74.17%), Query Frame = 0


Query: 46  TTNISKSFGLNSRPS--FRACAMAVFKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLP 105
           + N    FGL S  +   R  AMA +K+K + P G E E E  DD Y+LDAAEEAG+DLP
Sbjct: 30  SANTQSLFGLKSGTARGGRVTAMATYKVKFITPEG-ELEVECDDDVYVLDAAEEAGIDLP 89

Query: 106 YSCRAGACSTCAGKIVSGSVDQSDGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
           YSCRAG+CS+CAGK+VSGSVDQSD SFLDD+Q+ +G++LTC + PT+D  I THKE +++
Sbjct: 90  YSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDIV 148

[Close]

BLAST of PI0011754.3 vs. TAIR 10
Match: AT5G10000.1 (ferredoxin 4 )

HSP 1 Score: 134.8 bits (338), Expect = 6.2e-32
Identity = 66/128 (51.56%), Postives = 93/128 (72.66%), Query Frame = 0


Query: 40  PSSIGSTTNISKS--FGL-NSRPSF-RACAMAVFKIKLVEPCGTEHEFEASDDSYILDAA 99
           PS    TT ++ +  FGL +SR +F +  A    K+KL+ P G E E E ++D  IL++A
Sbjct: 21  PSQAQLTTRLNNTTYFGLSSSRGNFGKVFAKESRKVKLISPEGEEQEIEGNEDCCILESA 80

Query: 100 EEAGVDLPYSCRAGACSTCAGKIVSGSVDQSDGSFLDDDQMAKGYLLTCVSLPTADCVIH 159
           E AG++LPYSCR+G C TC GK+VSG VDQS GSFL+++Q+ KGY+LTC++LP  DCV++
Sbjct: 81  ENAGLELPYSCRSGTCGTCCGKLVSGKVDQSLGSFLEEEQIQKGYILTCIALPLEDCVVY 140

Query: 160 THKEGELI 164
           THK+ +LI
Sbjct: 141 THKQSDLI 148

[Close]

BLAST of PI0011754.3 vs. TAIR 10
Match: AT4G14890.1 (2Fe-2S ferredoxin-like superfamily protein )

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17
Identity = 50/119 (42.02%), Postives = 66/119 (55.46%), Query Frame = 0


Query: 45  STTNISKSFGLNSRPSFRACAMAVFKIKLVEPCGTEHEFEASDDSYILDAAEEAGVDLPY 104
           STT   ++F    R   RA     +K+ +VE  G   E E   D  IL  A ++G+D+PY
Sbjct: 34  STTTNRRNFLTTGRIIARA-----YKV-VVEHDGKTTELEVEPDETILSKALDSGLDVPY 93

Query: 105 SCRAGACSTCAGKIVSGSVDQSDGSFLDDDQMAKGYLLTCVSLPTADCVIHTHKEGELI 164
            C  G C TC  K+V+G+VDQS G  L DD + +GY L C S PT+DC I    E EL+
Sbjct: 94  DCNLGVCMTCPAKLVTGTVDQS-GGMLSDDVVERGYTLLCASYPTSDCHIKMIPEEELL 145

The following BLAST results are available for this feature:

BLAST of PI0011754.3 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27788	2.0e-43	64.39	Ferredoxin-3, chloroplastic OS=Zea mays OX=4577 GN=FDX3 PE=1 SV=1	[more]
Q9ZQG8	1.3e-42	59.09	Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=FD3 PE=1 SV=1	[more]
P94044	3.3e-38	54.55	Ferredoxin-6, chloroplastic OS=Zea mays OX=4577 GN=FDX6 PE=2 SV=1	[more]
P14937	8.2e-37	72.92	Ferredoxin, root R-B2 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]
P14936	1.2e-35	72.92	Ferredoxin, root R-B1 OS=Raphanus sativus OX=3726 PE=1 SV=1	[more]

BLAST of PI0011754.3 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LY90	8.4e-77	92.86	Ferredoxin OS=Cucumis sativus OX=3659 GN=Csa_1G163160 PE=3 SV=1	[more]
A0A5A7SWN7	4.6e-75	93.51	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G00770 PE=...	[more]
A0A5D3E4N5	7.1e-68	93.62	Ferredoxin OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003470 PE...	[more]
A0A6J1CLH4	3.0e-66	83.12	Ferredoxin OS=Momordica charantia OX=3673 GN=LOC111012698 PE=3 SV=1	[more]
A0A6J1FZ83	8.1e-64	79.62	Ferredoxin OS=Cucurbita moschata OX=3662 GN=LOC111449248 PE=3 SV=1	[more]

BLAST of PI0011754.3 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN64931.1	1.7e-76	92.86	hypothetical protein Csa_022774 [Cucumis sativus]	[more]
KAA0035450.1	9.5e-75	93.51	ferredoxin, root R-B1-like [Cucumis melo var. makuwa]	[more]
XP_038893731.1	1.2e-69	86.36	ferredoxin, root R-B2 [Benincasa hispida] >XP_038893732.1 ferredoxin, root R-B2 ...	[more]
TYK31073.1	1.5e-67	93.62	ferredoxin, root R-B2 [Cucumis melo var. makuwa]	[more]
XP_022142635.1	6.2e-66	83.12	ferredoxin, root R-B2 [Momordica charantia]	[more]

BLAST of PI0011754.3 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27510.1	9.2e-44	59.09	ferredoxin 3	[more]
AT1G10960.1	2.7e-35	62.28	ferredoxin 1	[more]
AT1G60950.1	1.7e-34	57.50	2Fe-2S ferredoxin-like superfamily protein	[more]
AT5G10000.1	6.2e-32	51.56	ferredoxin 4	[more]
AT4G14890.1	3.3e-17	42.02	2Fe-2S ferredoxin-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010241	Ferredoxin [2Fe-2S], plant	TIGRFAM	TIGR02008	TIGR02008	coord: 68..162 e-value: 2.7E-46 score: 153.3
IPR012675	Beta-grasp domain superfamily	GENE3D	3.10.20.30		coord: 66..163 e-value: 1.1E-33 score: 117.0
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PFAM	PF00111	Fer2	coord: 75..149 e-value: 1.5E-21 score: 76.2
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	PROSITE	PS51085	2FE2S_FER_2	coord: 69..160 score: 12.61445
IPR001041	2Fe-2S ferredoxin-type iron-sulfur binding domain	CDD	cd00207	fer2	coord: 74..155 e-value: 2.81726E-32 score: 108.636
None	No IPR available	PANTHER	PTHR43112	FERREDOXIN	coord: 13..162
None	No IPR available	PANTHER	PTHR43112:SF30	FERREDOXIN-3, CHLOROPLASTIC	coord: 13..162
IPR006058	2Fe-2S ferredoxin, iron-sulphur binding site	PROSITE	PS00197	2FE2S_FER_1	coord: 106..114
IPR036010	2Fe-2S ferredoxin-like superfamily	SUPERFAMILY	54292	2Fe-2S ferredoxin-like	coord: 63..160

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0011754	PI0011754	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011754.3-exon	PI0011754.3-exon-chr12:17457353..17458122	exon
PI0011754.3-exon	PI0011754.3-exon-chr12:17458278..17459318	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011754.3-three_prime_utr	PI0011754.3-three_prime_utr-chr12:17457353..17457649	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011754.3-cds	PI0011754.3-cds-chr12:17457650..17458122	CDS
PI0011754.3-cds	PI0011754.3-cds-chr12:17458278..17458296	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011754.3-five_prime_utr	PI0011754.3-five_prime_utr-chr12:17458297..17459318	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0011754.3	PI0011754.3-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051536	iron-sulfur cluster binding
molecular_function	GO:0046872	metal ion binding