PI0011718.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0011718.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr10: 3663945 .. 3664259 (-)
Sequence length	315
RNA-Seq Expression	PI0011718.1
Synteny	PI0011718.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATTCTACAAAGCCATCATGCCGCCAAGGGCCTCCTAAACAAACTGTTTCCCTATTACGACGAGCTAAGCTTCGTGTTCGAAAAAGATAGTGGTTCGAGAGCACGCGCGGAGACGTTTCCCGATGTGGGGTTGAATGTGCCTGGAGGGTATGAGGGATTTCCCACTGACGATGGAAACGATCTGGAGATCCCTATGATGTACAGTCAAGGACTCAACATGTCGCTTGACGACATCATGGACCCACGACCCAATCGCTCGAGTGGGGGTAGGACTAGTTCAAGCGAATCGAAGAGGAAGCAGGGAGGCTAG

mRNA sequence

ATGATAATTCTACAAAGCCATCATGCCGCCAAGGGCCTCCTAAACAAACTGTTTCCCTATTACGACGAGCTAAGCTTCGTGTTCGAAAAAGATAGTGGTTCGAGAGCACGCGCGGAGACGTTTCCCGATGTGGGGTTGAATGTGCCTGGAGGGTATGAGGGATTTCCCACTGACGATGGAAACGATCTGGAGATCCCTATGATGTACAGTCAAGGACTCAACATGTCGCTTGACGACATCATGGACCCACGACCCAATCGCTCGAGTGGGGGTAGGACTAGTTCAAGCGAATCGAAGAGGAAGCAGGGAGGCTAG

Coding sequence (CDS)

ATGATAATTCTACAAAGCCATCATGCCGCCAAGGGCCTCCTAAACAAACTGTTTCCCTATTACGACGAGCTAAGCTTCGTGTTCGAAAAAGATAGTGGTTCGAGAGCACGCGCGGAGACGTTTCCCGATGTGGGGTTGAATGTGCCTGGAGGGTATGAGGGATTTCCCACTGACGATGGAAACGATCTGGAGATCCCTATGATGTACAGTCAAGGACTCAACATGTCGCTTGACGACATCATGGACCCACGACCCAATCGCTCGAGTGGGGGTAGGACTAGTTCAAGCGAATCGAAGAGGAAGCAGGGAGGCTAG

Protein sequence

MIILQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDGNDLEIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQGG

Homology

[Close]

BLAST of PI0011718.1 vs. ExPASy TrEMBL
Match: A0A5D3CIS8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold73G00710 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.4e-24
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MIILQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDG 60
           +I+  SH AAKGLLN+ F +YDEL +VF +D G+    ETF +VG NV GGYEGF  +DG
Sbjct: 243 LIVSFSHLAAKGLLNRSFSHYDELYYVFGRDHGTGGHVETFVNVGSNVIGGYEGFIGNDG 302

Query: 61  NDLEIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQGG 105
           ND+EIP MYSQGL+MS DDIM  RP ++S GR +SS SKRK  G
Sbjct: 303 NDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRSKRKWVG 346

[Close]

BLAST of PI0011718.1 vs. ExPASy TrEMBL
Match: A0A5A7UNI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00630 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 8.9e-24
Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 1   MIILQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDG 60
           +I+  SH  AKG+LN+ F +YDEL +VF +D G+    ETF +VG NV GGYEGF  +DG
Sbjct: 238 LIVSFSHLVAKGILNRSFSHYDELCYVFGRDHGTGGHVETFVNVGSNVIGGYEGFIGNDG 297

Query: 61  NDLEIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQGG 105
           ND+EIP MYSQGL+MS DDIM  RP ++S GR +SS SKRK  G
Sbjct: 298 NDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRSKRKWVG 341

[Close]

BLAST of PI0011718.1 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.0e-23
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 4   LQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDGNDL 63
           ++SH AAK LLNKLF YYDEL++VFE D  +    ETF D+G N P GYEGF   DGND+
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237

Query: 64  EIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQG 104
           E P MYSQG+++S DD+   +P  +S GR  SSESKRK+G
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRG 277

[Close]

BLAST of PI0011718.1 vs. ExPASy TrEMBL
Match: A0A5A7UWV7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00660 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.7e-22
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 4   LQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDGNDL 63
           ++SH AAK LLNK FPYYDEL++VF++D      A+TF DVG N PGGYEGF   DGN+ 
Sbjct: 120 VRSHPAAKTLLNKPFPYYDELTYVFDRDRAMGPFAKTFADVGSNEPGGYEGFDMTDGNE- 179

Query: 64  EIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQ 103
           E P +YSQG++MS DD+   RP+R+S GRT SS SKRK+
Sbjct: 180 EFPPVYSQGIDMSQDDVRASRPSRASKGRTGSSGSKRKR 217

[Close]

BLAST of PI0011718.1 vs. ExPASy TrEMBL
Match: A0A5D3CX17 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00870 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 2.9e-22
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 6   SHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGF-PTDDGNDLE 65
           SH  A GLLN+ FP+Y+EL +VF +D  +  R ETF DV  NV G YEG   TDDGN++E
Sbjct: 29  SHPVANGLLNRSFPHYNELCYVFGRDCATGGRIETFVDVESNVSGWYEGLASTDDGNNIE 88

Query: 66  IPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQGG 105
           IP MYSQGL+MS +DIM  RP R+SG R +SSE KRK+GG
Sbjct: 89  IPTMYSQGLDMSPNDIMGTRPKRASGDRNASSELKRKRGG 128

[Close]

BLAST of PI0011718.1 vs. NCBI nr
Match: TYK11084.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 121.3 bits (303), Expect = 4.9e-24
Identity = 63/104 (60.58%), Postives = 77/104 (74.04%), Query Frame = 0


Query: 1   MIILQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDG 60
           +I+  SH AAKGLLN+ F +YDEL +VF +D G+    ETF +VG NV GGYEGF  +DG
Sbjct: 243 LIVSFSHLAAKGLLNRSFSHYDELYYVFGRDHGTGGHVETFVNVGSNVIGGYEGFIGNDG 302

Query: 61  NDLEIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQGG 105
           ND+EIP MYSQGL+MS DDIM  RP ++S GR +SS SKRK  G
Sbjct: 303 NDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRSKRKWVG 346

[Close]

BLAST of PI0011718.1 vs. NCBI nr
Match: KAA0056167.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.8e-23
Identity = 61/104 (58.65%), Postives = 76/104 (73.08%), Query Frame = 0


Query: 1   MIILQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDG 60
           +I+  SH  AKG+LN+ F +YDEL +VF +D G+    ETF +VG NV GGYEGF  +DG
Sbjct: 238 LIVSFSHLVAKGILNRSFSHYDELCYVFGRDHGTGGHVETFVNVGSNVIGGYEGFIGNDG 297

Query: 61  NDLEIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQGG 105
           ND+EIP MYSQGL+MS DDIM  RP ++S GR +SS SKRK  G
Sbjct: 298 NDIEIPSMYSQGLDMSSDDIMGTRPRQASDGRNASSRSKRKWVG 341

[Close]

BLAST of PI0011718.1 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 4.1e-23
Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 0


Query: 4   LQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDGNDL 63
           ++SH AAK LLNKLF YYDEL++VFE D  +    ETF D+G N P GYEGF   DGND+
Sbjct: 178 IRSHPAAKSLLNKLFSYYDELAYVFEWDRATGRFVETFADIGSNEPAGYEGFDMSDGNDI 237

Query: 64  EIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQG 104
           E P MYSQG+++S DD+   +P  +S GR  SSESKRK+G
Sbjct: 238 EFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRG 277

[Close]

BLAST of PI0011718.1 vs. NCBI nr
Match: KAA0060332.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22081.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.2 bits (287), Expect = 3.5e-22
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 4   LQSHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGFPTDDGNDL 63
           ++SH AAK LLNK FPYYDEL++VF++D      A+TF DVG N PGGYEGF   DGN+ 
Sbjct: 120 VRSHPAAKTLLNKPFPYYDELTYVFDRDRAMGPFAKTFADVGSNEPGGYEGFDMTDGNE- 179

Query: 64  EIPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQ 103
           E P +YSQG++MS DD+   RP+R+S GRT SS SKRK+
Sbjct: 180 EFPPVYSQGIDMSQDDVRASRPSRASKGRTGSSGSKRKR 217

[Close]

BLAST of PI0011718.1 vs. NCBI nr
Match: KAA0061395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 5.9e-22
Identity = 60/100 (60.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 6   SHHAAKGLLNKLFPYYDELSFVFEKDSGSRARAETFPDVGLNVPGGYEGF-PTDDGNDLE 65
           SH  A GLLN+ FP+Y+EL +VF +D  +  R ETF DV  NV G YEG   TDDGN++E
Sbjct: 29  SHPVANGLLNRSFPHYNELCYVFGRDCATGGRIETFVDVESNVSGWYEGLASTDDGNNIE 88

Query: 66  IPMMYSQGLNMSLDDIMDPRPNRSSGGRTSSSESKRKQGG 105
           IP MYSQGL+MS +DIM  RP R+SG R +SSE KRK+GG
Sbjct: 89  IPTMYSQGLDMSPNDIMGTRPKRASGDRNASSELKRKRGG 128

The following BLAST results are available for this feature:

BLAST of PI0011718.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011718.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CIS8	2.4e-24	60.58	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UNI7	8.9e-24	58.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BQI7	2.0e-23	58.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UWV7	1.7e-22	59.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CX17	2.9e-22	60.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0011718.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11084.1	4.9e-24	60.58	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0056167.1	1.8e-23	58.65	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033884.1	4.1e-23	58.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p...	[more]
KAA0060332.1	3.5e-22	59.60	retrotransposon protein [Cucumis melo var. makuwa] >TYK22081.1 retrotransposon p...	[more]
KAA0061395.1	5.9e-22	60.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK14749.1 retrotransposon p...	[more]

BLAST of PI0011718.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..104
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..104

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0011718	PI0011718	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011718.1-exon	PI0011718.1-exon-chr10:3663945..3664259	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011718.1-cds	PI0011718.1-cds-chr10:3663945..3664259	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0011718.1	PI0011718.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport