PI0011149.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0011149.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Glycine rich protein
Location	chr01: 3774893 .. 3776703 (+)
Sequence length	564
RNA-Seq Expression	PI0011149.1
Synteny	PI0011149.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCACCAAAACTTAGTCTCTAAACAAACAACAACATGAGTTCTAAAGTTTTTGCTTTCCTGATCGGTTTTTTCTTTGCCATTGTCGTTCTCATCTCCCCAGAGATGGCAGCGAGAGATCTTGCTTCGACTTCCATTGACAACCTTAGTGAGTTCTCCTTCATTATTCATTTCAATTTTCATCAACAGATCAAAATTCTTGCTTCTAAAGTTTATATATAAATATATAAAAGATTTAGAAATACACACATTGAGGTTACAAATTTTAAAATATTTATTAGGTCTGTTTGATAATTACTTAATTTTTACTTTTTTAATCAACACTTGATTTTTTAGTCAATTTTTTATAAAGAAAAATTTAAAAACTATCATTTTTTTTAATTATTTTTTAAAGTTTTTAACTCGACTTGGTTATTGAAAAAAAACACCCCTTTAAGATAGATAACAAAACAAATAAACCAATAGATTGAGTAGTGCTTATTAATTTTTTAATTTTAAAAAATGGTAAAAAGAAAATCAAATAATTACCTAAATATTTTTATAGAAATTTTCTCTTAAGAGTAAAATATGAAAGTGGTTTTTTTCTAGATCTTTTTGCCTATTGTTTCCATTTTATTGCTAAATTTTTGAAAACTAAAAGTTTTGGTAATTAAAACTTTAATCTACTTTTTTCTATTTAAAATTTGGTTTTTAAAGTTTTAAAAATGACATGTTTGAGCCCTAGAGGTCTGAATTCAATATCTAATTCGCTCCCAAAGTTTAAAACTGATTTATAATTAAAGTCTTATTGTAATTAACTAAACACTTAAAAACATTTACAAAATATGACAAAATTTCAAATTCTATTAGGAATACACACTAATAGACTATCAAAAGTCTATCAGTAATAGATCTAAAATTTTACTGTATTTTGTAAATATTTTAGTTCATTTTGCTATTTAATTTGAAATTGCTCATTTATAATTTACATATAAATTAATTAAAATATAACATTCTAACTCATAGGTCTAGTTATCATAAGTTTTAACTTAAATATATCATGTCATCTTTTGGTTTGGTCAACTAATTAGCGATCAACTCAACACATGCATACACATTATTTTGATGTCAATTCAACTTCAGGGACTAGTTCAAAATTCAAACTTGAGGGATCACTTCAAATCAAACAAAAAATTTTGAAAACGAAAACATGTTACTTACTTTTGAAATCTCTACAACCAAAGGCATCCATCTTAAAAATTCACATGCCAAACAAAAACTAACTTCAAATTTTAAAGACCAAAAGCTTACTTTACCCTACTCTATCCTACATCTAGTAGTTTATTTCGATTTAGATGTGTGCTTTATCAAATAGACCCTCAATCTATAGTTATTCTTAATGATATAATGTTGAAGACGTCACAACGGAGATAAATGGCGTAGATGATTCCAAGTATCGTTCGGGAGAAGACGGTGGAGACGAGTACCCTGAACGTGGCACTACAGTGACCCGAGACATGACCAAGTTCATTGCGGGTCTGATTACAGTTGCTGCCGCGAACGACAAGGCTGGTGCGTTAAGTGCTGCAACCATGCCGGAGAAGTTATTGATGCAAAACCCTAAAGCAGCTTAATTATGGGTATGGGGAGAAGAAAGGGTGGACAAAAACAATTTAAAAGTTTAGGTTTGGAAAATTATTAAGTAAAAGTTGAAAAATAAATATGCATGTGGGATGGAATGGCTGGCCTAATTTCTTTCAGTTATTATATATATATATGCTTTTTGCTAATTAATATCATTAAGGTGAAATGATGCACGATTAGAAAAATATTA

mRNA sequence

ATCACCAAAACTTAGTCTCTAAACAAACAACAACATGAGTTCTAAAGTTTTTGCTTTCCTGATCGGTTTTTTCTTTGCCATTGTCGTTCTCATCTCCCCAGAGATGGCAGCGAGAGATCTTGCTTCGACTTCCATTGACAACCTTAACGTCACAACGGAGATAAATGGCGTAGATGATTCCAAGTATCGTTCGGGAGAAGACGGTGGAGACGAGTACCCTGAACGTGGCACTACAGTGACCCGAGACATGACCAAGTTCATTGCGGGTCTGATTACAGTTGCTGCCGCGAACGACAAGGCTGGTGCGTTAAGTGCTGCAACCATGCCGGAGAAGTTATTGATGCAAAACCCTAAAGCAGCTTAATTATGGGTATGGGGAGAAGAAAGGGTGGACAAAAACAATTTAAAAGTTTAGGTTTGGAAAATTATTAAGTAAAAGTTGAAAAATAAATATGCATGTGGGATGGAATGGCTGGCCTAATTTCTTTCAGTTATTATATATATATATGCTTTTTGCTAATTAATATCATTAAGGTGAAATGATGCACGATTAGAAAAATATTA

Coding sequence (CDS)

ATGAGTTCTAAAGTTTTTGCTTTCCTGATCGGTTTTTTCTTTGCCATTGTCGTTCTCATCTCCCCAGAGATGGCAGCGAGAGATCTTGCTTCGACTTCCATTGACAACCTTAACGTCACAACGGAGATAAATGGCGTAGATGATTCCAAGTATCGTTCGGGAGAAGACGGTGGAGACGAGTACCCTGAACGTGGCACTACAGTGACCCGAGACATGACCAAGTTCATTGCGGGTCTGATTACAGTTGCTGCCGCGAACGACAAGGCTGGTGCGTTAAGTGCTGCAACCATGCCGGAGAAGTTATTGATGCAAAACCCTAAAGCAGCTTAA

Protein sequence

MSSKVFAFLIGFFFAIVVLISPEMAARDLASTSIDNLNVTTEINGVDDSKYRSGEDGGDEYPERGTTVTRDMTKFIAGLITVAAANDKAGALSAATMPEKLLMQNPKAA

Homology

[Close]

BLAST of PI0011149.1 vs. ExPASy TrEMBL
Match: A0A2P5BI59 (Glycine rich protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_236760 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 34/65 (52.31%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 1  MSSKVFAFLIGFFFAIVVLISPEMAARDLASTSIDNLNVTTEINGVDDSKYRSGEDGGDE 60
          M SK F +L G   A+V+LIS E+AA D+A TS DN NV   +NGV+D+KY  G +GG  
Sbjct: 1  MGSKAFLYL-GLLLAVVLLISSEVAAGDVAETSTDNKNVDATLNGVNDAKY-GGYNGG-- 60

Query: 61 YPERG 66
          YP  G
Sbjct: 61 YPGYG 61

[Close]

BLAST of PI0011149.1 vs. ExPASy TrEMBL
Match: A0A067F4R8 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032762mg PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.2e-04
Identity = 38/72 (52.78%), Postives = 43/72 (59.72%), Query Frame = 0


Query: 1  MSSKVFAFLIGFFFAIVVLISPEMAARDLASTSID---NLNVTTEINGVDDSKYRSG--- 60
          M SKVF  ++G   +IV+LIS E AARDLA TS D   N  V  E NGVDD+KY  G   
Sbjct: 1  MGSKVF-LMLGLLVSIVLLISSEAAARDLAETSNDDQKNGEVAGETNGVDDAKYNGGYGG 60

Query: 61 -EDGGDEYPERG 66
             GG  YP RG
Sbjct: 61 YPGGGRGYPGRG 71

The following BLAST results are available for this feature:

BLAST of PI0011149.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0011149.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2P5BI59	8.2e-04	52.31	Glycine rich protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_236760 PE=4 ...	[more]
A0A067F4R8	8.2e-04	52.78	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g032762mg PE=4 SV=1	[more]

BLAST of PI0011149.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of PI0011149.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0011149	PI0011149	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011149.1-five_prime_utr	PI0011149.1-five_prime_utr-chr01:3774893..3774926	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011149.1-exon	PI0011149.1-exon-chr01:3774893..3775038	exon
PI0011149.1-exon	PI0011149.1-exon-chr01:3776286..3776703	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011149.1-cds	PI0011149.1-cds-chr01:3774927..3775038	CDS
PI0011149.1-cds	PI0011149.1-cds-chr01:3776286..3776503	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0011149.1-three_prime_utr	PI0011149.1-three_prime_utr-chr01:3776504..3776703	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0011149.1	PI0011149.1-protein	polypeptide