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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGGGTTTCTGAGTAAGGTTGATATAAAGAAGAATTGTGAACTTTATGGGGCTCCCGCTTTCTCGGAAACGAATCAAGAGTAAAGAGAGAGACAAAGAGTTACCGAGATTGATGAAAGATTTAGGTTGAGAATCAGAGAATTGGAGACAGTTCAAATTCAGTTGATTCCATGGCCTGTCTCTTTCGTTCTTTGTGCAGAGAAAAAAAATAGAAAAGAGACGGAATGA mRNA sequence ATGGGGTTTCTGAGTAAGGTTGATATAAAGAAGAATTGTGAACTTTATGGGGCTCCCGCTTTCTCGGAAACGAATCAAGAATTTAGGTTGAGAATCAGAGAATTGGAGACAGTTCAAATTCAGTTGATTCCATGGCCTGTCTCTTTCGTTCTTTGTGCAGAGAAAAAAAATAGAAAAGAGACGGAATGA Coding sequence (CDS) ATGGGGTTTCTGAGTAAGGTTGATATAAAGAAGAATTGTGAACTTTATGGGGCTCCCGCTTTCTCGGAAACGAATCAAGAATTTAGGTTGAGAATCAGAGAATTGGAGACAGTTCAAATTCAGTTGATTCCATGGCCTGTCTCTTTCGTTCTTTGTGCAGAGAAAAAAAATAGAAAAGAGACGGAATGA Protein sequence MGFLSKVDIKKNCELYGAPAFSETNQEFRLRIRELETVQIQLIPWPVSFVLCAEKKNRKETE
Homology
BLAST of PI0010850.1 vs. ExPASy TrEMBL
Match: A0A0A0LA33 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733940 PE=4 SV=1) HSP 1 Score: 107.8 bits (268), Expect = 1.6e-20 Identity = 56/72 (77.78%), Postives = 56/72 (77.78%), Query Frame = 0
Query: 1 MGFLSKVDIKKNCELYGAPAFSETNQE-------------FRLRIRELETVQIQLIPWPV 60
MGFLSKVDIKKNCELYGAPAF ETNQE FRLRIRELETVQIQLIPWPV
Sbjct: 1 MGFLSKVDIKKNCELYGAPAFWETNQEQKETQRVTEIDEIFRLRIRELETVQIQLIPWPV 60
BLAST of PI0010850.1 vs. NCBI nr
Match: KAE8650999.1 (hypothetical protein Csa_002313 [Cucumis sativus]) HSP 1 Score: 107.8 bits (268), Expect = 3.3e-20 Identity = 56/72 (77.78%), Postives = 56/72 (77.78%), Query Frame = 0
Query: 1 MGFLSKVDIKKNCELYGAPAFSETNQE-------------FRLRIRELETVQIQLIPWPV 60
MGFLSKVDIKKNCELYGAPAF ETNQE FRLRIRELETVQIQLIPWPV
Sbjct: 1 MGFLSKVDIKKNCELYGAPAFWETNQEQKETQRVTEIDEIFRLRIRELETVQIQLIPWPV 60
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LA33 | 1.6e-20 | 77.78 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733940 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8650999.1 | 3.3e-20 | 77.78 | hypothetical protein Csa_002313 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| PI0010850 | PI0010850 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0010850.1-exon | PI0010850.1-exon-chr08:22397773..22397852 | exon |
| PI0010850.1-exon | PI0010850.1-exon-chr08:22397892..22398000 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0010850.1-cds | PI0010850.1-cds-chr08:22397773..22397852 | CDS |
| PI0010850.1-cds | PI0010850.1-cds-chr08:22397892..22398000 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0010850.1 | PI0010850.1-protein | polypeptide |
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