PI0010658.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0010658.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	LOB domain-containing protein
Location	chr12: 14643101 .. 14646395 (-)
Sequence length	825
RNA-Seq Expression	PI0010658.1
Synteny	PI0010658.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCAGTGTCCAAAAATTGTCGTTCAACATTATTCCTATATTGTTTGTAAAGGGCAGAGGAGTAGTCCTAGAAATTAAAGTAGGGGGTTACGTGTCGTTAGACGACAGGACGATGAAGACAGAAAATGGGAGGAAACAAGGGGGAGGAGCAGCCCCATGCGCAGCATGCAAGCTTCTGAGAAGAAGGTGTGGGGAAGATTGTGTATTTGCTCCATACTTTCCGGCCGATCAACCTCATAAGTTCGCCAACGTTCATAAGGTCTTTGGCGCTAGCAATGTTAACAAAATGCTTCAGGTTTCTCTCTTTTTTTTCCCCTTTTTAAATTAAATAACTACGAGTAACTAAATTAAAATACCATAAACATCGTCTTTATTATCCTAAATCATGTCTAATTGTAAACTAACTAATTTATGCCGTTTGTTTGTTTTATGTCAAAGAAATAACTTATTATAAACCAAACTCTACGTTTGTTATTTAGTTTATAAATAGATACGATCATATAATGTATCTTACTATCTCTTTCAATGGTTTTAATTTTCTTAAGATAAAGAATGTAGAACATAAAAATTTAAACATTTGATTTTAAAAGAAAGCTAAAGATATTTGTTAATTATTGTTGAGTTATATCATGTTAACTCGACTTTTATAATGTCGAATTAAAAAAGAAAATCCAATTTAAATAGGTATTTGTTTTAAATTTTCTCTTTTTTTTGGGTTTCTCTTGGGCAGTGTATGAAAGTGGGTTAGGAAAAATTTGCAACAATCTTTGACCAAAACTATTCCAACTTTCATCACTGTTGGGCTGCAATTTTTAGACAAGATGTCAAAAGCTTAATTATCAAAAGCGGATGTGTGTGTATATATGTCTATATATATATATATATATTTTATTTTTTTTATGGTCGAACTAAATTATTTTACTATTTTTTTCTTCTTTTGTTTTTTAGTAAAGATGGAGGATTAAATCTTCGATCTGCCAATATTATTGAGTGAAGTTCATTTCTGTATTTTCTTAATGTCACGACGAGATAGAGTTTTTTTTTAAAACAAAAAAGTTTTATAATATTAAACTCTTAAGAATTTTAAATGATAGGGTAGGACATATTGTTGACTCTATCATGAAAATGTTGACAAATATTGGTTGAGTTACCATCACATGCCAATAACTATAGGCAAATGAAACTATCCCCAAAATAAATAAAACTAATAATATAATTCAAAATGTCAAGATTGGAATTTTAAAAAGTTTCAAGGAAATACAAAGAAATCAAAATGTTCAAAATATAACAACTAAGTCTATAATTTAATTACTTTTTTTAAACAAATAAATTACTTCTTTTTTTAAAAAAAGAAATTAAAAGAAAAAAAAAATGGTGGCTTATTCTATCAACTTTAACGGTTTGAACCTTTCATTGCGACCGTTAATAATTAATAAAATATTATTGTGGAAAATACAAAAAGGTGTGTCTTTTCATTTAAGAAAAGCATCAAATTTTCTTTCTTTTCTTTTCTCTTTTTTTTTTTTTTTCTAAGGAATTCAAACAACTCTTTGAAAAAAGAGAGTTCTAGTTTCAAGTCAAATTCATGATGTAGATAGACCAAAACAAAATAAATGAAATTACAAAAGTAGCCTATTATACAAGGTAATTACAAATAATACCCTATAACTTTAAATATTACTTTAAATCCTTTAAAAAATAAAAATAAAAATAGAAAAAATTACTCTGAAGACCTAATTGATTACAAATTTGTACTTTATGCATAATTAAATTAAGAACTATACTTATAATATCATATTATTTTACATTATAAGAAATTAAAAAAAGAAGTTGCTAACATCTCACATGGGTTGTGTGTATGTATATATTAGGAAAAAAAGTGTACGTATTTTAAATAGTAAAACTACTCAAAATATTTATAAATATAAAAAAATATCACTATCTATTATTAGTGATAGATAATGATAAACCTTAATAGACAACTATCATATATCTATCAATAGATCTATCAATGTTTACCATTAATAAACAATGTCAGTTTACAATATCCGTAAATATTTTGGTTTATTTATATTTGAAAACGATAAATGAATTATTACATCAAAGCTATTATGAAGAAAATATAGTTAATTAATAAATTTAAGGTCAACTTAAGTCACTAAAGGATATAATTGATAGATTAATTAATTTTCAAATCTAAAAATTTAATTAAATTATCTAAAATCACATGCCTTTTGGATTTTAGCTTTTAACCTTTTCTCCCATTTGCCTTGTACATCACGTGAAGTTATTATTTATTTTAATTAATAGATGTCTTGTTATTACAAAGGAAAAAAAAAAACATATATTTAATTCTTTTTATAAAAAACATATAATTAATTAAGCTAAAAAAGAAGGGAAAAAATGTTTTATGTAGACTTTGAGGGTTAATTGTGGGCAGCTACCCACCCCTTTTGCTTCTTTGTGGTGGGACAACCAACAAATAGAAACCAAATTAGAAACTACCATACCATCTTTTATTAACTAAATAACAATAATATTCCACCAAAATTTCTAACTTTTTTTAGAATCCCAATTGAAGTAGAATATATTATTATAATATTAACCACTAAAATTTTGATCTAAATTTTAGTTTGTTTGTGTAACTTTCAATATTTGTCTTCAACTTTGGCTAAACAAAGTTGTATTCCATAACTTCAAATATTCTTATATTCATATATACTCTTTTGTTTGAAAAAAAATTGATGTCAATGCTAACATTGTAGGAGTTACCAATTCACCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTGCGCGACCCAGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGATGCCCTCCAAACTCAGCTGGCTTTAGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAACCTAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGAGGACTCAATGTGGTGATATATCATAATATTATTGTTTTCCTAAAATCCCATTTCCATGGAGATTTAGTTAGTTTTGCCATTTTTTCTTTTTTTTTTCTACCCTATTCTGTCAAATTGGCTTTCACCTGGTTGTTGGCCGATCTTCTACTTATATACTACTTATATACCACTTACTTTTGTATATGCCGACCTGAGCATAGCTCAAGCAGTCAGGTA

mRNA sequence

GGGCAGTGTCCAAAAATTGTCGTTCAACATTATTCCTATATTGTTTGTAAAGGGCAGAGGAGTAGTCCTAGAAATTAAAGTAGGGGGTTACGTGTCGTTAGACGACAGGACGATGAAGACAGAAAATGGGAGGAAACAAGGGGGAGGAGCAGCCCCATGCGCAGCATGCAAGCTTCTGAGAAGAAGGTGTGGGGAAGATTGTGTATTTGCTCCATACTTTCCGGCCGATCAACCTCATAAGTTCGCCAACGTTCATAAGGTCTTTGGCGCTAGCAATGTTAACAAAATGCTTCAGGAGTTACCAATTCACCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTGCGCGACCCAGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGATGCCCTCCAAACTCAGCTGGCTTTAGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAACCTAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGAGGACTCAATGTGGTGATATATCATAATATTATTGTTTTCCTAAAATCCCATTTCCATGGAGATTTAGTTAGTTTTGCCATTTTTTCTTTTTTTTTTCTACCCTATTCTGTCAAATTGGCTTTCACCTGGTTGTTGGCCGATCTTCTACTTATATACTACTTATATACCACTTACTTTTGTATATGCCGACCTGAGCATAGCTCAAGCAGTCAGGTA

Coding sequence (CDS)

ATGAAGACAGAAAATGGGAGGAAACAAGGGGGAGGAGCAGCCCCATGCGCAGCATGCAAGCTTCTGAGAAGAAGGTGTGGGGAAGATTGTGTATTTGCTCCATACTTTCCGGCCGATCAACCTCATAAGTTCGCCAACGTTCATAAGGTCTTTGGCGCTAGCAATGTTAACAAAATGCTTCAGGAGTTACCAATTCACCAACGAGGAGATGCAGTGAGCAGTTTGGTGTACGAAGCAAATGCTCGAGTGCGCGACCCAGTGTATGGGTGTGTTGGAGCAATATCGTCTCTACAGCATCAAATAGATGCCCTCCAAACTCAGCTGGCTTTAGCTCAAGCCGAGGTGGTGCACCTCAGGGTGCGTCAGACAGCATCATTTTCAAACTATGGGCTAAGCCCAACAAGCCCAAGTAATAGTGGGTCACCCTCATCAAGGCTCATGGGCTCACAACCTAGGCCCATGTTTGAGATGGATATGGTTGTGGACCAGGCCATGGAGGACTCAATGTGGTGA

Protein sequence

MKTENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQPRPMFEMDMVVDQAMEDSMW

Homology

[Close]

BLAST of PI0010658.1 vs. ExPASy Swiss-Prot
Match: Q9SHE9 (LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=1)

HSP 1 Score: 246.1 bits (627), Expect = 2.8e-64
Identity = 126/169 (74.56%), Postives = 145/169 (85.80%), Query Frame = 0


Query: 4   ENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQEL 63
           E+ RKQ G A+PCAACKLLRRRC +DCVF+PYFPAD+P KFANVH+VFGASNVNKMLQEL
Sbjct: 3   ESSRKQ-GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQEL 62

Query: 64  PIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQT 123
           PIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QID LQ QLALAQAEVVHLRVRQ+
Sbjct: 63  PIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 122

Query: 124 ASFSNYGLSPTSPSNSGSPSSRLMGSQP-RPMF-EMDMVVDQAMEDSMW 171
            +F  +GL P SPS+SGSPSS+ +  Q  + MF  MD+V + ++ +SMW
Sbjct: 123 TNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of PI0010658.1 vs. ExPASy Swiss-Prot
Match: Q8LBW3 (LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 SV=2)

HSP 1 Score: 182.2 bits (461), Expect = 5.0e-45
Identity = 83/120 (69.17%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 10  GGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRG 69
           G G++PCA+CKLLRRRC +DC+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR 
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNY 129
           DAV+SLV+EANARVRDPVYGCVGAIS LQ+Q+  LQ QLA+AQAE++ ++++   +  ++
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122

[Close]

BLAST of PI0010658.1 vs. ExPASy Swiss-Prot
Match: Q9SA51 (LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.7e-41
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 4   ENGRKQGGGAAPCAACKLLRRRCGED-CVFAPYFPADQPHKFANVHKVFGASNVNKMLQE 63
           + G + G   +PCA CKLLRR+C +D CVFAPYFPA +P+KFA VHK+FGASNVNKMLQE
Sbjct: 3   QKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQE 62

Query: 64  LPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 120
           L  + R DAV S+VYEANAR++DPVYGCVG ISSL  Q++ LQTQLA AQAE++H+R
Sbjct: 63  LSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of PI0010658.1 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 2.9e-37
Identity = 79/140 (56.43%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 14  APCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 73
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 74  SLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSP 133
           SL YEA ARVRDPVYGCVGAIS LQ Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 134 TSPSNSGSPSSRLMGSQPRP 154
           ++    G+    +   QP P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

[Close]

BLAST of PI0010658.1 vs. ExPASy Swiss-Prot
Match: Q8L5T5 (LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 8.5e-37
Identity = 69/111 (62.16%), Postives = 89/111 (80.18%), Query Frame = 0


Query: 15  PCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVSS 74
           PCAACKLLRRRC ++C F+PYF   +PHKFA+VHKVFGASNV+KML E+P  QR DA +S
Sbjct: 45  PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANS 104

Query: 75  LVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTAS 126
           LVYEAN R+RDPVYGC+GAIS+LQ Q+ ALQ +L   ++E++  + R+  +
Sbjct: 105 LVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVA 155

[Close]

BLAST of PI0010658.1 vs. ExPASy TrEMBL
Match: A0A0A0LYG0 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=3 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 2.9e-88
Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKML 60
           MKTENGRKQGGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNKML
Sbjct: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKML 60

Query: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120
           QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV
Sbjct: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120

Query: 121 RQTASFSNYGLSPTSPSNSGSPSSRLMGSQPRPMFEMDMVVDQAMEDSMW 171
           RQTASFSNYGLSPTSPSNSGSPSSRLMGSQ R MFEMDMVVDQAME+SMW
Sbjct: 121 RQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of PI0010658.1 vs. ExPASy TrEMBL
Match: A0A1S3CAK2 (LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 3.2e-87
Identity = 164/170 (96.47%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKML 60
           MKTENGRKQGGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNKML
Sbjct: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKML 60

Query: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120
           QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV
Sbjct: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120

Query: 121 RQTASFSNYGLSPTSPSNSGSPSSRLMGSQPRPMFEMDMVVDQAMEDSMW 171
           RQTASFSNYGLSPTSPSNSGSPSSRL+GS  R MFEMDMVVDQA+EDSMW
Sbjct: 121 RQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of PI0010658.1 vs. ExPASy TrEMBL
Match: A0A6J1KP63 (LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495252 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.1e-82
Identity = 162/173 (93.64%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-PRPMFEMDMVVDQAMEDSMW 171
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ  RPMFEMDMVVDQAM DS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of PI0010658.1 vs. ExPASy TrEMBL
Match: A0A6J1EHY2 (LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111434249 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.1e-82
Identity = 162/173 (93.64%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-PRPMFEMDMVVDQAMEDSMW 171
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ  RPMFEMDMVVDQAM DS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of PI0010658.1 vs. ExPASy TrEMBL
Match: B9GK49 (LOB domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G081400 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 142/167 (85.03%), Postives = 153/167 (91.62%), Query Frame = 0


Query: 4   ENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQEL 63
           E GRKQ G  APCAACKLLRRRC +DCVFAPYFPAD+P KFANVHKVFGASNVNKMLQEL
Sbjct: 3   EGGRKQ-GAPAPCAACKLLRRRCAQDCVFAPYFPADEPQKFANVHKVFGASNVNKMLQEL 62

Query: 64  PIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQT 123
           P+HQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QIDALQTQLALAQAEVVHLRVRQT
Sbjct: 63  PVHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDALQTQLALAQAEVVHLRVRQT 122

Query: 124 ASFSNYGLSPTSPSNSGSPSSRLMGSQPRPMFEMDMVVDQAMEDSMW 171
           A+ SN+GLSP SPSNSGSPSSRLMGSQ +PMF+MDMV   ++ +SMW
Sbjct: 123 ATLSNHGLSPASPSNSGSPSSRLMGSQMKPMFDMDMVDHTSLGESMW 168

[Close]

BLAST of PI0010658.1 vs. NCBI nr
Match: XP_004145462.1 (LOB domain-containing protein 4 [Cucumis sativus] >KGN66910.1 hypothetical protein Csa_006984 [Cucumis sativus])

HSP 1 Score: 334.3 bits (856), Expect = 6.0e-88
Identity = 166/170 (97.65%), Postives = 168/170 (98.82%), Query Frame = 0


Query: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKML 60
           MKTENGRKQGGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNKML
Sbjct: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKML 60

Query: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120
           QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV
Sbjct: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120

Query: 121 RQTASFSNYGLSPTSPSNSGSPSSRLMGSQPRPMFEMDMVVDQAMEDSMW 171
           RQTASFSNYGLSPTSPSNSGSPSSRLMGSQ R MFEMDMVVDQAME+SMW
Sbjct: 121 RQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRTMFEMDMVVDQAMEESMW 170

[Close]

BLAST of PI0010658.1 vs. NCBI nr
Match: XP_008459081.1 (PREDICTED: LOB domain-containing protein 4 [Cucumis melo])

HSP 1 Score: 330.9 bits (847), Expect = 6.6e-87
Identity = 164/170 (96.47%), Postives = 167/170 (98.24%), Query Frame = 0


Query: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKML 60
           MKTENGRKQGGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNKML
Sbjct: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKML 60

Query: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120
           QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV
Sbjct: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120

Query: 121 RQTASFSNYGLSPTSPSNSGSPSSRLMGSQPRPMFEMDMVVDQAMEDSMW 171
           RQTASFSNYGLSPTSPSNSGSPSSRL+GS  R MFEMDMVVDQA+EDSMW
Sbjct: 121 RQTASFSNYGLSPTSPSNSGSPSSRLVGSHSRAMFEMDMVVDQAIEDSMW 170

[Close]

BLAST of PI0010658.1 vs. NCBI nr
Match: XP_038895183.1 (LOB domain-containing protein 4-like [Benincasa hispida])

HSP 1 Score: 328.6 bits (841), Expect = 3.3e-86
Identity = 163/170 (95.88%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKML 60
           MKTENGRKQGGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNKML
Sbjct: 1   MKTENGRKQGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNKML 60

Query: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRV 120
           QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID LQTQLALAQAEVVHLRV
Sbjct: 61  QELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDTLQTQLALAQAEVVHLRV 120

Query: 121 RQTASFSNYGLSPTSPSNSGSPSSRLMGSQPRPMFEMDMVVDQAMEDSMW 171
           RQTASFSNYGLSPTSPSNSGSPSSRLMGSQ RPMFEMDM VDQA+ DSMW
Sbjct: 121 RQTASFSNYGLSPTSPSNSGSPSSRLMGSQSRPMFEMDMAVDQAIGDSMW 170

[Close]

BLAST of PI0010658.1 vs. NCBI nr
Match: XP_022927419.1 (LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB domain-containing protein 4-like [Cucurbita maxima] >XP_023520045.1 LOB domain-containing protein 4-like [Cucurbita pepo subsp. pepo] >KAG7019437.1 LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 314.3 bits (804), Expect = 6.4e-82
Identity = 162/173 (93.64%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID+LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDSLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-PRPMFEMDMVVDQAMEDSMW 171
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ  RPMFEMDMVVDQAM DS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of PI0010658.1 vs. NCBI nr
Match: KAG6583812.1 (LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.2 bits (801), Expect = 1.4e-81
Identity = 162/173 (93.64%), Postives = 165/173 (95.38%), Query Frame = 0


Query: 1   MKTENG-RKQ-GGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNK 60
           MKTENG RKQ GGGAAPCAACKLLRRRCGE+CVFAPYFPADQPHKFANVHKVFGASNVNK
Sbjct: 1   MKTENGLRKQGGGGAAPCAACKLLRRRCGEECVFAPYFPADQPHKFANVHKVFGASNVNK 60

Query: 61  MLQELPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHL 120
           MLQELP+HQRGDAVSSLVYEANARVRDPVYGCVGAISSLQ QID LQTQLALAQAEVVHL
Sbjct: 61  MLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQIDNLQTQLALAQAEVVHL 120

Query: 121 RVRQTASFSNYGLSPTSPSNSGSPSSRLMGSQ-PRPMFEMDMVVDQAMEDSMW 171
           RVRQTASFSNYGLSPTSP NSGSPSSRLMGSQ  RPMFEMDMVVDQAM DS+W
Sbjct: 121 RVRQTASFSNYGLSPTSPGNSGSPSSRLMGSQSSRPMFEMDMVVDQAMGDSVW 173

[Close]

BLAST of PI0010658.1 vs. TAIR 10
Match: AT1G31320.1 (LOB domain-containing protein 4 )

HSP 1 Score: 246.1 bits (627), Expect = 2.0e-65
Identity = 126/169 (74.56%), Postives = 145/169 (85.80%), Query Frame = 0


Query: 4   ENGRKQGGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQEL 63
           E+ RKQ G A+PCAACKLLRRRC +DCVF+PYFPAD+P KFANVH+VFGASNVNKMLQEL
Sbjct: 3   ESSRKQ-GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQEL 62

Query: 64  PIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQT 123
           PIHQRGDAVSS+VYEANARVRDPVYGCVGAISSLQ QID LQ QLALAQAEVVHLRVRQ+
Sbjct: 63  PIHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQS 122

Query: 124 ASFSNYGLSPTSPSNSGSPSSRLMGSQP-RPMF-EMDMVVDQAMEDSMW 171
            +F  +GL P SPS+SGSPSS+ +  Q  + MF  MD+V + ++ +SMW
Sbjct: 123 TNFPGHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEASLGESMW 170

[Close]

BLAST of PI0010658.1 vs. TAIR 10
Match: AT2G30130.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 182.2 bits (461), Expect = 3.5e-46
Identity = 83/120 (69.17%), Postives = 104/120 (86.67%), Query Frame = 0


Query: 10  GGGAAPCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRG 69
           G G++PCA+CKLLRRRC +DC+FAPYFP D PHKFA VHKVFGASNV+KMLQELP+HQR 
Sbjct: 3   GPGSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 62

Query: 70  DAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNY 129
           DAV+SLV+EANARVRDPVYGCVGAIS LQ+Q+  LQ QLA+AQAE++ ++++   +  ++
Sbjct: 63  DAVNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSH 122

[Close]

BLAST of PI0010658.1 vs. TAIR 10
Match: AT1G16530.1 (ASYMMETRIC LEAVES 2-like 9 )

HSP 1 Score: 168.7 bits (426), Expect = 4.0e-42
Identity = 79/117 (67.52%), Postives = 96/117 (82.05%), Query Frame = 0


Query: 4   ENGRKQGGGAAPCAACKLLRRRCGED-CVFAPYFPADQPHKFANVHKVFGASNVNKMLQE 63
           + G + G   +PCA CKLLRR+C +D CVFAPYFPA +P+KFA VHK+FGASNVNKMLQE
Sbjct: 3   QKGHRHGRTVSPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQE 62

Query: 64  LPIHQRGDAVSSLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLR 120
           L  + R DAV S+VYEANAR++DPVYGCVG ISSL  Q++ LQTQLA AQAE++H+R
Sbjct: 63  LSENHRSDAVDSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIR 119

[Close]

BLAST of PI0010658.1 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-38
Identity = 79/140 (56.43%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 14  APCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 73
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 74  SLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSP 133
           SL YEA ARVRDPVYGCVGAIS LQ Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 134 TSPSNSGSPSSRLMGSQPRP 154
           ++    G+    +   QP P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

[Close]

BLAST of PI0010658.1 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 156.4 bits (394), Expect = 2.1e-38
Identity = 79/140 (56.43%), Postives = 95/140 (67.86%), Query Frame = 0


Query: 14  APCAACKLLRRRCGEDCVFAPYFPADQPHKFANVHKVFGASNVNKMLQELPIHQRGDAVS 73
           +PCAACK LRR+C   C+FAPYFP ++PHKFANVHK+FGASNV K+L EL  HQR DAV+
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 74  SLVYEANARVRDPVYGCVGAISSLQHQIDALQTQLALAQAEVVHLRVRQTASFSNYGLSP 133
           SL YEA ARVRDPVYGCVGAIS LQ Q+  LQ +L  A A++ H           YGLS 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAH-----------YGLST 129

Query: 134 TSPSNSGSPSSRLMGSQPRP 154
           ++    G+    +   QP P
Sbjct: 130 SAAGAPGNVVDLVFQPQPLP 138

The following BLAST results are available for this feature:

BLAST of PI0010658.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SHE9	2.8e-64	74.56	LOB domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=LBD4 PE=1 SV=...	[more]
Q8LBW3	5.0e-45	69.17	LOB domain-containing protein 12 OS=Arabidopsis thaliana OX=3702 GN=LBD12 PE=1 S...	[more]
Q9SA51	5.7e-41	67.52	LOB domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=LBD3 PE=2 SV=...	[more]
Q9FML4	2.9e-37	56.43	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
Q8L5T5	8.5e-37	62.16	LOB domain-containing protein 15 OS=Arabidopsis thaliana OX=3702 GN=LBD15 PE=1 S...	[more]

BLAST of PI0010658.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYG0	2.9e-88	97.65	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G713680 PE=3 SV...	[more]
A0A1S3CAK2	3.2e-87	96.47	LOB domain-containing protein 4 OS=Cucumis melo OX=3656 GN=LOC103498298 PE=3 SV=...	[more]
A0A6J1KP63	3.1e-82	93.64	LOB domain-containing protein 4-like OS=Cucurbita maxima OX=3661 GN=LOC111495252...	[more]
A0A6J1EHY2	3.1e-82	93.64	LOB domain-containing protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114342...	[more]
B9GK49	2.6e-73	85.03	LOB domain-containing protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G081400...	[more]

BLAST of PI0010658.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145462.1	6.0e-88	97.65	LOB domain-containing protein 4 [Cucumis sativus] >KGN66910.1 hypothetical prote...	[more]
XP_008459081.1	6.6e-87	96.47	PREDICTED: LOB domain-containing protein 4 [Cucumis melo]	[more]
XP_038895183.1	3.3e-86	95.88	LOB domain-containing protein 4-like [Benincasa hispida]	[more]
XP_022927419.1	6.4e-82	93.64	LOB domain-containing protein 4-like [Cucurbita moschata] >XP_023000973.1 LOB do...	[more]
KAG6583812.1	1.4e-81	93.64	LOB domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of PI0010658.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31320.1	2.0e-65	74.56	LOB domain-containing protein 4	[more]
AT2G30130.1	3.5e-46	69.17	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G16530.1	4.0e-42	67.52	ASYMMETRIC LEAVES 2-like 9	[more]
AT5G63090.2	2.1e-38	56.43	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	2.1e-38	56.43	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 94..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..148
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..152
None	No IPR available	PANTHER	PTHR31301:SF58	LOB DOMAIN-CONTAINING PROTEIN 3	coord: 5..158
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 5..158
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 15..112 e-value: 1.9E-43 score: 147.1
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 14..115 score: 26.549206

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0010658	PI0010658	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010658.1-exon	PI0010658.1-exon-chr12:14643101..14643630	exon
PI0010658.1-exon	PI0010658.1-exon-chr12:14646101..14646395	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010658.1-three_prime_utr	PI0010658.1-three_prime_utr-chr12:14643101..14643300	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010658.1-cds	PI0010658.1-cds-chr12:14643301..14643630	CDS
PI0010658.1-cds	PI0010658.1-cds-chr12:14646101..14646283	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010658.1-five_prime_utr	PI0010658.1-five_prime_utr-chr12:14646284..14646395	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0010658.1	PI0010658.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010087	phloem or xylem histogenesis
molecular_function	GO:0000976	transcription cis-regulatory region binding