PI0010554.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0010554.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 6248740 .. 6250325 (-)
Sequence length	522
RNA-Seq Expression	PI0010554.1
Synteny	PI0010554.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACATTATTTCAGCTTTAAATCTGCAACCACAAATGGTTTTTTCCACAACAGCTTTCATCGCTAAGGTTGTCATCTTTGCTTTGCTGCTTCTTGTGTCGTTCAATGTTTCCGCGATGGACCTCGTCGAAACCAATAGAGCTGCTCAGATAGCTAGTAAGTTTTCAGCTTTCAATCATCACTCAACTCGAAAACTTATTAATAAGCATATAGTTTACATAATAATAATGATCTATAATCTTTTTACGTCATACTTTAATTTTACCCTGAGTTTGGAATTCGAATACAGAACTTTATGTTCATTCAATAACCTCTGAAACATAAACTTTAAGTTAAGTAGAGTTAGGGTTGCTCATCGGTTGATCGAAGGTTGGTTTTGGGTTAAAACTGACACCGACCCCACTGATTTGTTGGTTTAGAGATTGGTTGGGTGGTAGTCAAAATTTGTGAGGGCCAATGGAACGTGTCCAACCGACTACACAAATGATCGGCCGGTTTTGGGAAGGATGAAAAGATCCTATAGTTTGTAGTGGCCTTGGTCGGTTGGTGATCGGAAAAGAAAAAAAACACCGAAAAGAGAGAAGAGAATCTAGTTTTGAGAAAAATGAAAATATCCATTGACATGCCCATATGCACATCGATAAATTCATAAATTGAATGGTTCGACGTTAATATTAATATCCATTAATATAACATTTGTACAACAAGAAAAATACCATTTATTTAGTTTAATACGAATATGAATACCAATGACAATATCCACAATGACTTAGTTTGAGAGAGTAAAAAAACTTAATTATTAATATAAATAAAATTTATAATTGTTTTGACTTACAAGAAATAATATATGTTGATATAAATATTTTATCGATATACGCACCCTTCTAATATTCGTAATATTGAAACCTCAAATTTGAGTATACAATAAAAGTATTAAATATTTTCTATCATTCAAATATGACTGTTGGTTGGTGCGACCAAAGTCTCACATTGATTATATACTGTTTACTCGAAGCATAAACTATCACGATTTTAATTACTTTTAGTTTCACCAAAAAAAGATCTTAAACCAATAGAACTATTCTTCATTTGTATATCACAAATCTTTTCTTTTATCTAATTAATGTGAGATTTTGGTCGCATCAAAAGGAGTCGATTTGGATTATTCATCAAAAGTTTTGTTCATATTATTTATTCACACACTATTTTTGTTTGAATAGGTAAGCCAAAGATGGAAAAGAATGGTGTGAATAGCAAATGTAGAAGATTAATTGCTCGAGAGTTGGATTGGCCGCCTTGGAACGGAAATTATGCAATCCCTCCTCCTTCTAATCCCACTCGATCTTGTTTAACATACTAAACTTAATTATAACTTCACATATTTTTCTTATACAAAAGTTTTTTAATTGATTGATGGTTTAACATTGTATTAGAAAAGTACAATATCATCTTCTATTAATATACAATATTAAATTTATCTTTGACTATAATTATTTGTATCGTTCATTAAACGATAAATTTGTCTATTTTATATTCGATATAAATTATATAACAAACAAAATGAGGGCATTTTAAAATACATTTGAG

mRNA sequence

AAACATTATTTCAGCTTTAAATCTGCAACCACAAATGGTTTTTTCCACAACAGCTTTCATCGCTAAGGTTGTCATCTTTGCTTTGCTGCTTCTTGTGTCGTTCAATGTTTCCGCGATGGACCTCGTCGAAACCAATAGAGCTGCTCAGATAGCTAGTAAGCCAAAGATGGAAAAGAATGGTGTGAATAGCAAATGTAGAAGATTAATTGCTCGAGAGTTGGATTGGCCGCCTTGGAACGGAAATTATGCAATCCCTCCTCCTTCTAATCCCACTCGATCTTGTTTAACATACTAAACTTAATTATAACTTCACATATTTTTCTTATACAAAAGTTTTTTAATTGATTGATGGTTTAACATTGTATTAGAAAAGTACAATATCATCTTCTATTAATATACAATATTAAATTTATCTTTGACTATAATTATTTGTATCGTTCATTAAACGATAAATTTGTCTATTTTATATTCGATATAAATTATATAACAAACAAAATGAGGGCATTTTAAAATACATTTGAG

Coding sequence (CDS)

ATGGTTTTTTCCACAACAGCTTTCATCGCTAAGGTTGTCATCTTTGCTTTGCTGCTTCTTGTGTCGTTCAATGTTTCCGCGATGGACCTCGTCGAAACCAATAGAGCTGCTCAGATAGCTAGTAAGCCAAAGATGGAAAAGAATGGTGTGAATAGCAAATGTAGAAGATTAATTGCTCGAGAGTTGGATTGGCCGCCTTGGAACGGAAATTATGCAATCCCTCCTCCTTCTAATCCCACTCGATCTTGTTTAACATACTAA

Protein sequence

MVFSTTAFIAKVVIFALLLLVSFNVSAMDLVETNRAAQIASKPKMEKNGVNSKCRRLIARELDWPPWNGNYAIPPPSNPTRSCLTY

Homology

[Close]

BLAST of PI0010554.1 vs. ExPASy TrEMBL
Match: A0A0A0L9E5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175580 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-29
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MVFSTTAFIAKVVIFALLLLVSFNVSAMD-LVETNRAAQIASKPKMEKNGV-NSKCRRLI 60
          MVFS TAFI KVVIFALLLLVSFNVSAM+ LVETN+AA+IASK ++EK GV N KCRRLI
Sbjct: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI 60

Query: 61 ARELDWPPWNGNYAIPPPSNPTRSCLT 86
          ARE DWPPWNGNYAIPPPSNPTRSCLT
Sbjct: 61 AREFDWPPWNGNYAIPPPSNPTRSCLT 87

[Close]

BLAST of PI0010554.1 vs. NCBI nr
Match: KGN57257.1 (hypothetical protein Csa_010805 [Cucumis sativus])

HSP 1 Score: 138.7 bits (348), Expect = 2.4e-29
Identity = 74/87 (85.06%), Postives = 79/87 (90.80%), Query Frame = 0


Query: 1  MVFSTTAFIAKVVIFALLLLVSFNVSAMD-LVETNRAAQIASKPKMEKNGV-NSKCRRLI 60
          MVFS TAFI KVVIFALLLLVSFNVSAM+ LVETN+AA+IASK ++EK GV N KCRRLI
Sbjct: 1  MVFSITAFIPKVVIFALLLLVSFNVSAMNQLVETNKAARIASKTRIEKKGVTNDKCRRLI 60

Query: 61 ARELDWPPWNGNYAIPPPSNPTRSCLT 86
          ARE DWPPWNGNYAIPPPSNPTRSCLT
Sbjct: 61 AREFDWPPWNGNYAIPPPSNPTRSCLT 87

The following BLAST results are available for this feature:

BLAST of PI0010554.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010554.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L9E5	1.2e-29	85.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G175580 PE=4 SV=1	[more]

BLAST of PI0010554.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57257.1	2.4e-29	85.06	hypothetical protein Csa_010805 [Cucumis sativus]	[more]

BLAST of PI0010554.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0010554	PI0010554	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010554.1-exon	PI0010554.1-exon-chr06:6248740..6249106	exon
PI0010554.1-exon	PI0010554.1-exon-chr06:6250171..6250325	exon

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010554.1-three_prime_utr	PI0010554.1-three_prime_utr-chr06:6248740..6248966	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010554.1-cds	PI0010554.1-cds-chr06:6248967..6249106	CDS
PI0010554.1-cds	PI0010554.1-cds-chr06:6250171..6250291	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010554.1-five_prime_utr	PI0010554.1-five_prime_utr-chr06:6250292..6250325	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0010554.1	PI0010554.1-protein	polypeptide