PI0010299.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0010299.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 27732771 .. 27734753 (+)
Sequence length	444
RNA-Seq Expression	PI0010299.1
Synteny	PI0010299.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTGCAGAAAGTTTCTTCAAGTGTCAGAATCGTAATAAGAAGGAAGCAGCAAGGGTAAAATTTCTGACAAACTCCAAAGACCTCTTTTATCGGCCCTGGTTTCGGACTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGGAAAAAAAGAAGAACTGGGGAAGAACCCGGCGACGATACTCAGCTCTTTTTTTCCCTCTTGTTCTTCCTTCTTCGACCTTCTTCTCCTTTTTAGAACAATCCCTTTTCCCCATTTTTTGTTTTTCCCCTTTCCCTGTTCATTCCCCTGCTTTTTTCTTAACGGTTTCACAGTCTTCCCCGTTTGGCAGAGCTTGAAACTTCAAGAAATTTCGTTTCTGGGTTTGTGTGCTTTTCTTTCTGTGAAGTGTTACATTCATCAAGTTCCTGTTTTTCCCTTTACTTTGGAGTATGTTATCACTCTTTTACTGGATTTTGATTTCTGGGTTCAAATGGGGTTTTTCCATGCATGTCTAAAATGTGTGATCTTTGCTCTTTTAGGACTGCATTGCATTTGGGTTTCTTGGGTTTTGTTGGTTGTTGGGATCATTGGGGATGGTGAATGTAATGGGTGTTTGTTTTTGAAGTATTTTTTTTTGTTTGGAAGATCAACTTTTGTTGGCTGTACAGCATATTGATCATGGAGTTTTGAGGTTTTTTGAAAGGAGTTTTAGGTGATGGTCTTGTTCCAATTGTTAAAATTTGCTCATTATAGTGTTTAGTTCATTGAGCTAATGAAAGCAGAAGATTTTGCTTGACTGTCGAAGCATTCTTGATTCTGATTATGTTTCTTTACACATCAGCATTCTACAAAGGGAAGAACTTCGTTTGATTCTGTGATATTATGTTGTGTTGCTGATGTATTGATGCTTTGTTTTCTGCTGATAGTGTGCAAAATCAATGCATGGCGCTTTATTACTTGAGTTAGCAAGTTGGTTTTTGAAAAAAGTTTTTGTTTTCATGCATTTTGTCTACTTGAAATTTTAAGGAATGAGTAAAAGATACAATAGTTGAAGGCATAGCAGCTTGTCCTGACACATGGGGTACTGATCTTTCTTTCTGTTGAAGATAACTATTTATATCAAGGAGTTGCTGCCTAATAAACATAGCTATTTTTAGCATTCAATTATTTTGTGTCAATATTTACATTTATAATCGATTGATAATTTTGTGTATTGATTGAGTGCGAATGCATTTTTTGCTGCATTATAACATTGGACAAAAGTCGCATGCATTTTGTGGCCCTTCAACTTCGGGTCTTCTTATTTTGGGGATTTTATCATCAACAATAAGTTTGGGGCACTAGAGCATGCTAGAATGTCTTTTTCTGTTCATTGGATGAATGAAGATTTCAGTGATCTATCTTTCCTAAATCTGTTGAACTACATGTGGTATTGTACTTCATCTACTCCTGTAATGGTACTTTTACTTATGCTGCTTAGTTTTTGAGCCACACATTTATTTTACTGGTGCCCAGTGCCATTGCTACTTTTAGCCAGGTCATTTCTTTTCAATAAGTTCGAACAACTTGATCTTAACTTATTGTTAGTTGACTTTGTTCAATTGACATATGTTTTCTGTTACTTATTTTGTATTTCACTATTTCATTTATGGTTTTCACATGTTTATAGTAAATGGCAATGCTAATTTTCCAACGTAAGAAACAATGCTCATTGAGTTAAGTTAGAGATAATGCCAAGTATTTATTCTCTTTTCTTCATTAATGAATATTTTCCTTTTCTTTTCAAAAAGGAAAAAAGGTTGAGATATGCCAAAATTAGAAGCACTGTTTGTTCTTGATTGTTCTTGATACACATTACGCAGATATAATTAGTATGTCAGTTTTTTCACTCGTAGTTTTTTGGCTTATTGTAGTGGACTGTAAAAGATTTGAACATTTTGACATTCCATCATGAATATGAATTTGTTGTCTCATTTTTTTCTTCAGGTGCTGA

mRNA sequence

TTTGCAGAAAGTTTCTTCAAGTGTCAGAATCGTAATAAGAAGGAAGCAGCAAGGGTAAAATTTCTGACAAACTCCAAAGACCTCTTTTATCGGCCCTGGTTTCGGACTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGGAAAAAAAGAAGAACTGGGGAAGAACCCGGCGACGATACTCAGCTCTTTTTTTCCCTCTTGTTCTTCCTTCTTCGACCTTCTTCTCCTTTTTAGAACAATCCCTTTTCCCCATTTTTTGTTTTTCCCCTTTCCCTGTTCATTCCCCTGCTTTTTTCTTAACGGTTTCACAGTCTTCCCCGTTTGGCAGAGCTTGAAACTTCAAGAAATTTCGTTTCTGGGTTTGTGTGCTTTTCTTTCTGTGAAGTGTTACATTCATCAAGTTCCTGTTTTTCCCTTTACTTTGGAGTGCTGA

Coding sequence (CDS)

TTTGCAGAAAGTTTCTTCAAGTGTCAGAATCGTAATAAGAAGGAAGCAGCAAGGGTAAAATTTCTGACAAACTCCAAAGACCTCTTTTATCGGCCCTGGTTTCGGACTCATTCAATTCCTCGAACTCGGCGTTTAGCTTCTGGTTGGTGGGGAAAAAAAGAAGAACTGGGGAAGAACCCGGCGACGATACTCAGCTCTTTTTTTCCCTCTTGTTCTTCCTTCTTCGACCTTCTTCTCCTTTTTAGAACAATCCCTTTTCCCCATTTTTTGTTTTTCCCCTTTCCCTGTTCATTCCCCTGCTTTTTTCTTAACGGTTTCACAGTCTTCCCCGTTTGGCAGAGCTTGAAACTTCAAGAAATTTCGTTTCTGGGTTTGTGTGCTTTTCTTTCTGTGAAGTGTTACATTCATCAAGTTCCTGTTTTTCCCTTTACTTTGGAGTGCTGA

Protein sequence

FAESFFKCQNRNKKEAARVKFLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKNPATILSSFFPSCSSFFDLLLLFRTIPFPHFLFFPFPCSFPCFFLNGFTVFPVWQSLKLQEISFLGLCAFLSVKCYIHQVPVFPFTLEC

Homology

[Close]

BLAST of PI0010299.1 vs. ExPASy TrEMBL
Match: A0A0A0L4K3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G039350 PE=4 SV=1)

HSP 1 Score: 251.5 bits (641), Expect = 2.1e-63
Identity = 127/151 (84.11%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   FAESFFKCQNRNKKEAARVKFLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKNP 60
           FAE FFKCQNRNKKEAARVK LTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKNP
Sbjct: 2   FAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKNP 61

Query: 61  ATILSSFFP---SCSSFFDLLLLFRTIPFPH-FLFFPFPCSFPCFFLNGFTVFPVWQSLK 120
           ATILSSFFP     S+FF  L      PFPH FLFFPFPCS PCFFLNGFT FP+WQSLK
Sbjct: 62  ATILSSFFPLVLPSSTFFPFL---GPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLK 121

Query: 121 LQEISFLGLCAFLSVKCYIHQVPVFPFTLEC 148
           LQEISFLGL A LSVKCYIH VPVFPF LEC
Sbjct: 122 LQEISFLGLRALLSVKCYIHLVPVFPFPLEC 149

[Close]

BLAST of PI0010299.1 vs. NCBI nr
Match: KGN55981.2 (hypothetical protein Csa_023720, partial [Cucumis sativus])

HSP 1 Score: 251.5 bits (641), Expect = 4.4e-63
Identity = 127/151 (84.11%), Postives = 129/151 (85.43%), Query Frame = 0


Query: 1   FAESFFKCQNRNKKEAARVKFLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKNP 60
           FAE FFKCQNRNKKEAARVK LTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKNP
Sbjct: 1   FAEGFFKCQNRNKKEAARVKVLTNSKDLFYRPWFRTHSIPRTRRLASGWWGKKEELGKNP 60

Query: 61  ATILSSFFP---SCSSFFDLLLLFRTIPFPH-FLFFPFPCSFPCFFLNGFTVFPVWQSLK 120
           ATILSSFFP     S+FF  L      PFPH FLFFPFPCS PCFFLNGFT FP+WQSLK
Sbjct: 61  ATILSSFFPLVLPSSTFFPFL---GPTPFPHFFLFFPFPCSVPCFFLNGFTDFPLWQSLK 120

Query: 121 LQEISFLGLCAFLSVKCYIHQVPVFPFTLEC 148
           LQEISFLGL A LSVKCYIH VPVFPF LEC
Sbjct: 121 LQEISFLGLRALLSVKCYIHLVPVFPFPLEC 148

The following BLAST results are available for this feature:

BLAST of PI0010299.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0010299.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4K3	2.1e-63	84.11	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G039350 PE=4 SV=1	[more]

BLAST of PI0010299.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55981.2	4.4e-63	84.11	hypothetical protein Csa_023720, partial [Cucumis sativus]	[more]

BLAST of PI0010299.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0010299	PI0010299	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010299.1-exon	PI0010299.1-exon-chr06:27732771..27733207	exon
PI0010299.1-exon	PI0010299.1-exon-chr06:27734747..27734753	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010299.1-cds	PI0010299.1-cds-chr06:27732771..27733207	CDS
PI0010299.1-cds	PI0010299.1-cds-chr06:27734747..27734753	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0010299.1	PI0010299.1-protein	polypeptide