PI0010174.2 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0010174.2
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like
Location	chr01: 6331272 .. 6333090 (+)
Sequence length	1673
RNA-Seq Expression	PI0010174.2
Synteny	PI0010174.2

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCAAATAAAATTTTTCACTATAAAATGCCAATTGCTAAACCCGCCTCCAGCGGTGTGTCAAAGAAATGGCTTCCGTTTCCCGATCACTTCTTACGGCGGCGGCTTCCAGGTCCATGGCCGGTCGTACCAGATCACTTGCTAATAAAACCCTAAATCCATTGCTTGTTTCTTCTTCCTCCAGAAGCTTTCCTTCCTTTTCCAGGTACTTTCACTTCAAAGTTTGTAATTTCATTCAGTCCTTTGCGTGCCGGAATTTCTTTGCGATCTTTGTTAATTTTTACTGTTTTTGGATCTTGATTATACTTTATTTGCTTCCGTTTTCATTGCTCGTTCTTTGTTTCTCTTTAGGATTGTTTCGTCTTTGGCTAATGTGGAGTCTCTGATGCCACTCCACACCGCCGTCGCCTCAGCTCGGCTGAAGTCCAAAATTGCTGTCGACTCCCATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTAATTCTCCATTTCCTTTTTTGCGTTGTTCTTTTAAATGTCGGCATTTTTATCTGCGATATGGAGAGGGTTTTTTTATTGATGTGATTTGGGATTCTGCCTTGTTAAATACATCTAATCTTCTTACCCTCTGTTTCATTCTCGAAACACTGCAAAATTTCTAGTTGGTTTTCTTCTAAAATTGATTCTGTTTTTCAAATTCATCTCTTAGCAGATATTTGATGTACACGAAGTAAAAGAAGTTGAGAAATGAACTTCTTATATGTGTGAAATAGACTAGAGCTACTTTTGATTCTGCAATATTTTCTTCATTATTTAATCCAAATTCTTTCATTTCCATGTAAAGCTTATTCCTTTCACAAGTCTGTTCACCTACTCCTTCAAATATGGAGACACTTCTACGAGCTTTGGCAATGTTGTTGATGAATTCCAAAATGAGTACTGTTTTACCCACTCTTGCCCCTACGAATGGTCCTATTTTTTTCTCCACGTCGAAAAGGGGCTGAAAGATCCACTTCTTTAATTACTGTTTAAAAATAACTGTTCTTGGAGTTTTGATTGCCTTGAACTTGGCATCCTTTCCATTCTAAGTTCTGGTTGTTCGGAGAACAATTTTGTTTTTGATTATTTTATTTTGAAAAATCAGACAGCTTACTAGGTTCTTTATTTAGCTTCTTACATATACGCAGAAAATCGTTTTGAAATGTTGGCCAAATTTCAAAACCAAAAACATAAGAATCTCATCCGGTACAAACTATGTATAAAAAGTGGAAAATGGGAAATAGTCACCAAATGATCCATTAGTTATTGACTAACATTGCATCTTTTGTGTATGTACTCTTGATTTATGAATTACATTCAAGAAATGGCAATCCATAACTTTCATCTTGAATGGAACCATGCGTCTCTTGTATATCTTAATGAGTTTGTTTCCTAACGTCATCGCTTTACCTTATCTTTTAGGATTTGCAACATCTTTGTGACATAACATGGTTGGTGAAAACAAATTGTAATTGATAATACAGCTGAATGACTGGTAGCTGAAACGACCTTCCATAGGACTTGTGAGGTTTTTGCATCTTTCCTACTTTTCTTTGTACGATACCTTTATCACAAGGAAGAATCATTCAGACAACTATTTTTTAGTTTTTATCATTGTATAATGCAATGCGGCCATATTTTCTGGATATGCAGAGAGCTAATGTTTTAAGCCTTTGAACACAAACCTTGGGAGGTTAGATTTTTGTTAGGCATCTCTCTTGCTCTTGACTTGTTCAATAACATGCAATTGATTTCTTACATTCTCTAAATATGAAGTCTTGAGCTGATTTCCAATGCTTTTAAAA

mRNA sequence

CCCAAATAAAATTTTTCACTATAAAATGCCAATTGCTAAACCCGCCTCCAGCGGTGTGTCAAAGAAATGGCTTCCGTTTCCCGATCACTTCTTACGGCGGCGGCTTCCAGGTCCATGGCCGGTCGTACCAGATCACTTGCTAATAAAACCCTAAATCCATTGCTTGTTTCTTCTTCCTCCAGAAGCTTTCCTTCCTTTTCCAGGATTGTTTCGTCTTTGGCTAATGTGGAGTCTCTGATGCCACTCCACACCGCCGTCGCCTCAGCTCGGCTGAAGTCCAAAATTGCTGTCGACTCCCATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTAATTCTCCATTTCCTTTTTTGCGTTGTTCTTTTAAATGTCGGCATTTTTATCTGCGATATGGAGAGGGTTTTTTTATTGATGTGATTTGGGATTCTGCCTTGTTAAATACATCTAATCTTCTTACCCTCTGTTTCATTCTCGAAACACTGCAAAATTTCTAGTTGGTTTTCTTCTAAAATTGATTCTGTTTTTCAAATTCATCTCTTAGCAGATATTTGATGTACACGAAGTAAAAGAAGTTGAGAAATGAACTTCTTATATGTGTGAAATAGACTAGAGCTACTTTTGATTCTGCAATATTTTCTTCATTATTTAATCCAAATTCTTTCATTTCCATGTAAAGCTTATTCCTTTCACAAGTCTGTTCACCTACTCCTTCAAATATGGAGACACTTCTACGAGCTTTGGCAATGTTGTTGATGAATTCCAAAATGAGTACTGTTTTACCCACTCTTGCCCCTACGAATGGTCCTATTTTTTTCTCCACGTCGAAAAGGGGCTGAAAGATCCACTTCTTTAATTACTGTTTAAAAATAACTGTTCTTGGAGTTTTGATTGCCTTGAACTTGGCATCCTTTCCATTCTAAGTTCTGGTTGTTCGGAGAACAATTTTGTTTTTGATTATTTTATTTTGAAAAATCAGACAGCTTACTAGGTTCTTTATTTAGCTTCTTACATATACGCAGAAAATCGTTTTGAAATGTTGGCCAAATTTCAAAACCAAAAACATAAGAATCTCATCCGGTACAAACTATGTATAAAAAGTGGAAAATGGGAAATAGTCACCAAATGATCCATTAGTTATTGACTAACATTGCATCTTTTGTGTATGTACTCTTGATTTATGAATTACATTCAAGAAATGGCAATCCATAACTTTCATCTTGAATGGAACCATGCGTCTCTTGTATATCTTAATGAGTTTGTTTCCTAACGTCATCGCTTTACCTTATCTTTTAGGATTTGCAACATCTTTGTGACATAACATGGTTGGTGAAAACAAATTGTAATTGATAATACAGCTGAATGACTGGTAGCTGAAACGACCTTCCATAGGACTTGTGAGGTTTTTGCATCTTTCCTACTTTTCTTTGTACGATACCTTTATCACAAGGAAGAATCATTCAGACAACTATTTTTTAGTTTTTATCATTGTATAATGCAATGCGGCCATATTTTCTGGATATGCAGAGAGCTAATGTTTTAAGCCTTTGAACACAAACCTTGGGAGGTTAGATTTTTGTTAGGCATCTCTCTTGCTCTTGACTTGTTCAATAACATGCAATTGATTTCTTACATTCTCTAAATATGAAGTCTTGAGCTGATTTCCAATGCTTTTAAAA

Coding sequence (CDS)

ATGGCTTCCGTTTCCCGATCACTTCTTACGGCGGCGGCTTCCAGGTCCATGGCCGGTCGTACCAGATCACTTGCTAATAAAACCCTAAATCCATTGCTTGTTTCTTCTTCCTCCAGAAGCTTTCCTTCCTTTTCCAGGATTGTTTCGTCTTTGGCTAATGTGGAGTCTCTGATGCCACTCCACACCGCCGTCGCCTCAGCTCGGCTGAAGTCCAAAATTGCTGTCGACTCCCATTGCTGGAGCTGGCTTTCTGAAGGTTGTTTAATTCTCCATTTCCTTTTTTGCGTTGTTCTTTTAAATGTCGGCATTTTTATCTGCGATATGGAGAGGGTTTTTTTATTGATGTGA

Protein sequence

MASVSRSLLTAAASRSMAGRTRSLANKTLNPLLVSSSSRSFPSFSRIVSSLANVESLMPLHTAVASARLKSKIAVDSHCWSWLSEGCLILHFLFCVVLLNVGIFICDMERVFLLM

Homology

[Close]

BLAST of PI0010174.2 vs. ExPASy Swiss-Prot
Match: Q93ZJ3 (Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=NFD6 PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.3e-04
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 3  SVSRSLLTAAASRSMAGRTRSLANKTLN-PLLVSSSSRSFPSFSRI---VSSLANVESLM 62
          S +RS+L AA+SRS A  T   A++  + P L  +++R  P  S +   V     VESL+
Sbjct: 8  SGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLL 67

Query: 63 PLHTAVASARLKSKIAVDSHCWSWLSEGC 88
          P H+A ASA + SK+++    + WLS+ C
Sbjct: 68 PYHSATASALMTSKLSISGQTYGWLSDAC 96

[Close]

BLAST of PI0010174.2 vs. ExPASy TrEMBL
Match: A0A5D3BYV0 (Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2392G00150 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MASVSRSLLT-AAASRSMAGRTRSLANKTLNPLLVSSSSRSFPSFSRIVSSLANVESLMP 60
          MASVSRSLLT AAASRSMAGRTR LA+KTLNPLLVSSSSRSFPS +RIVSSLANVESLMP
Sbjct: 1  MASVSRSLLTAAAASRSMAGRTRPLAHKTLNPLLVSSSSRSFPSITRIVSSLANVESLMP 60

Query: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87
          LHTAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of PI0010174.2 vs. ExPASy TrEMBL
Match: A0A1S3BGG1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103489582 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.2e-31
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MASVSRSLLT-AAASRSMAGRTRSLANKTLNPLLVSSSSRSFPSFSRIVSSLANVESLMP 60
          MASVSRSLLT AAASRSMAGRTR LA+KTLNPLLVSSSSRSFPS +RIVSSLANVESLMP
Sbjct: 1  MASVSRSLLTAAAASRSMAGRTRPLAHKTLNPLLVSSSSRSFPSITRIVSSLANVESLMP 60

Query: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87
          LHTAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of PI0010174.2 vs. ExPASy TrEMBL
Match: A0A0A0K7P3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268490 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.4e-30
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MASVSRSLLTAAASRSMAGRTRSLANKTLNPLLV-SSSSRSFPSFSRIVSSLANVESLMP 60
          MASVSRSLLTAAASRSM GRT+SLA+KTLNPL V SSSSR+FPSF+RIVSSLANVESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87
          LHTAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of PI0010174.2 vs. ExPASy TrEMBL
Match: A0A6J1C4G8 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007834 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.1e-25
Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MASVSRSLLTAAASRSMAGRTRSLANKTLNPLLV-SSSSRSFPSFSRIVSSLANVESLMP 60
          MA+V RSLLTAA SRS+AGRTR+L  KTLNP+ V SSSSR  PS SRIVSSLA VESLMP
Sbjct: 1  MAAVCRSLLTAAGSRSIAGRTRTLTPKTLNPMPVSSSSSRGVPSVSRIVSSLATVESLMP 60

Query: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87
          LH+AVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHSAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of PI0010174.2 vs. ExPASy TrEMBL
Match: A0A6J1GKU0 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbita moschata OX=3662 GN=LOC111454867 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 3.4e-24
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = 0


Query: 1  MASVSRSLLTAAA---SRSMAGRTRSLANKTLNPLLVSSSSRSFPSFSRIVSSLANVESL 60
          MAS+ RSLL AAA   SRSMAGRTR+LA+ TL P+ VSSSSR F S SRI SSLA+V+SL
Sbjct: 1  MASICRSLLAAAAAGGSRSMAGRTRTLAHVTLKPVPVSSSSRGFISVSRIASSLASVDSL 60

Query: 61 MPLHTAVASARLKSKIAVDSHCWSWLSEG 87
          MPLH+AVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 MPLHSAVASARLKSKIAVDSHCWSWLSEG 89

[Close]

BLAST of PI0010174.2 vs. NCBI nr
Match: XP_008447032.1 (PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like [Cucumis melo] >KAA0036617.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa] >TYK03356.1 protein NUCLEAR FUSION DEFECTIVE 6 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 4.5e-31
Identity = 82/87 (94.25%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MASVSRSLLT-AAASRSMAGRTRSLANKTLNPLLVSSSSRSFPSFSRIVSSLANVESLMP 60
          MASVSRSLLT AAASRSMAGRTR LA+KTLNPLLVSSSSRSFPS +RIVSSLANVESLMP
Sbjct: 1  MASVSRSLLTAAAASRSMAGRTRPLAHKTLNPLLVSSSSRSFPSITRIVSSLANVESLMP 60

Query: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87
          LHTAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of PI0010174.2 vs. NCBI nr
Match: XP_011659076.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucumis sativus] >KGN44352.1 hypothetical protein Csa_015783 [Cucumis sativus])

HSP 1 Score: 142.1 bits (357), Expect = 2.9e-30
Identity = 80/87 (91.95%), Postives = 84/87 (96.55%), Query Frame = 0


Query: 1  MASVSRSLLTAAASRSMAGRTRSLANKTLNPLLV-SSSSRSFPSFSRIVSSLANVESLMP 60
          MASVSRSLLTAAASRSM GRT+SLA+KTLNPL V SSSSR+FPSF+RIVSSLANVESLMP
Sbjct: 1  MASVSRSLLTAAASRSMPGRTKSLAHKTLNPLPVSSSSSRTFPSFTRIVSSLANVESLMP 60

Query: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87
          LHTAVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of PI0010174.2 vs. NCBI nr
Match: XP_038887804.1 (protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida])

HSP 1 Score: 138.7 bits (348), Expect = 3.3e-29
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 1  MASVSRSLLTAAASRSMAGRTRSLANKTLNPLLVSSSSRSFPSFSRIVSSLANVESLMPL 60
          MASV RSLLTAAASRSMAGRTR+LA+KTLNPLLVSSSSR F S SRIVSSLA VESLMPL
Sbjct: 1  MASVCRSLLTAAASRSMAGRTRTLAHKTLNPLLVSSSSRGFSSVSRIVSSLATVESLMPL 60

Query: 61 HTAVASARLKSKIAVDSHCWSWLSEG 87
          H+AVASARLKSKIAVDSHCW WLSEG
Sbjct: 61 HSAVASARLKSKIAVDSHCWCWLSEG 86

[Close]

BLAST of PI0010174.2 vs. NCBI nr
Match: XP_022136047.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 125.9 bits (315), Expect = 2.2e-25
Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = 0


Query: 1  MASVSRSLLTAAASRSMAGRTRSLANKTLNPLLV-SSSSRSFPSFSRIVSSLANVESLMP 60
          MA+V RSLLTAA SRS+AGRTR+L  KTLNP+ V SSSSR  PS SRIVSSLA VESLMP
Sbjct: 1  MAAVCRSLLTAAGSRSIAGRTRTLTPKTLNPMPVSSSSSRGVPSVSRIVSSLATVESLMP 60

Query: 61 LHTAVASARLKSKIAVDSHCWSWLSEG 87
          LH+AVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 LHSAVASARLKSKIAVDSHCWSWLSEG 87

[Close]

BLAST of PI0010174.2 vs. NCBI nr
Match: XP_023531748.1 (protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 124.4 bits (311), Expect = 6.3e-25
Identity = 69/86 (80.23%), Postives = 74/86 (86.05%), Query Frame = 0


Query: 1  MASVSRSLLTAAASRSMAGRTRSLANKTLNPLLVSSSSRSFPSFSRIVSSLANVESLMPL 60
          MASV RS+LTA  SRSMAGRTR+L  KTLNP+  SSSS+   S SRIVSSLA VESLMPL
Sbjct: 1  MASVCRSVLTATGSRSMAGRTRTLLRKTLNPMPDSSSSKGLTSVSRIVSSLATVESLMPL 60

Query: 61 HTAVASARLKSKIAVDSHCWSWLSEG 87
          H+AVASARLKSKIAVDSHCWSWLSEG
Sbjct: 61 HSAVASARLKSKIAVDSHCWSWLSEG 86

[Close]

BLAST of PI0010174.2 vs. TAIR 10
Match: AT4G39300.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 73.2 bits (178), Expect = 1.6e-13
Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 0


Query: 1  MASVSRSLLTAAASRSMAGRTRSLANKTLN--PLLVS----SSSRSFPSFSRIVSSLANV 60
          MAS  RS L  A SR++  R+R++  K+LN  P   S    S S+S P  SR++S+L +V
Sbjct: 1  MASFCRSAL-MAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHTAVASARLKSKIAVDSHCWSWLSEG 87
          E+++PLH+AVASARL+S IA DS CWS LS+G
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQG 91

[Close]

BLAST of PI0010174.2 vs. TAIR 10
Match: AT4G39300.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11630.2); Has 89 Blast hits to 89 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 7.8e-13
Identity = 46/91 (50.55%), Postives = 63/91 (69.23%), Query Frame = 0


Query: 1  MASVSRSLLTAAASRSMAGRTRSLANKTLN--PLLVS----SSSRSFPSFSRIVSSLANV 60
          MAS  RS L  A SR++  R+R++  K+LN  P   S    S S+S P  SR++S+L +V
Sbjct: 1  MASFCRSAL-MAGSRNLVSRSRTVTQKSLNLKPTTTSSPFASMSQSIPRASRVLSALGSV 60

Query: 61 ESLMPLHTAVASARLKSKIAVDSHCWSWLSE 86
          E+++PLH+AVASARL+S IA DS CWS LS+
Sbjct: 61 ETMIPLHSAVASARLRSSIAADSSCWSLLSQ 90

[Close]

BLAST of PI0010174.2 vs. TAIR 10
Match: AT2G20585.1 (nuclear fusion defective 6 )

HSP 1 Score: 47.4 bits (111), Expect = 9.2e-06
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 3  SVSRSLLTAAASRSMAGRTRSLANKTLN-PLLVSSSSRSFPSFSRI---VSSLANVESLM 62
          S +RS+L AA+SRS A  T   A++  + P L  +++R  P  S +   V     VESL+
Sbjct: 8  SGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLL 67

Query: 63 PLHTAVASARLKSKIAVDSHCWSWLSEGC 88
          P H+A ASA + SK+++    + WLS+ C
Sbjct: 68 PYHSATASALMTSKLSISGQTYGWLSDAC 96

[Close]

BLAST of PI0010174.2 vs. TAIR 10
Match: AT2G20585.2 (nuclear fusion defective 6 )

HSP 1 Score: 47.4 bits (111), Expect = 9.2e-06
Identity = 34/89 (38.20%), Postives = 52/89 (58.43%), Query Frame = 0


Query: 3  SVSRSLLTAAASRSMAGRTRSLANKTLN-PLLVSSSSRSFPSFSRI---VSSLANVESLM 62
          S +RS+L AA+SRS A  T   A++  + P L  +++R  P  S +   V     VESL+
Sbjct: 8  SGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLL 67

Query: 63 PLHTAVASARLKSKIAVDSHCWSWLSEGC 88
          P H+A ASA + SK+++    + WLS+ C
Sbjct: 68 PYHSATASALMTSKLSISGQTYGWLSDAC 96

[Close]

BLAST of PI0010174.2 vs. TAIR 10
Match: AT2G20585.3 (nuclear fusion defective 6 )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 34/88 (38.64%), Postives = 52/88 (59.09%), Query Frame = 0


Query: 3  SVSRSLLTAAASRSMAGRTRSLANKTLN-PLLVSSSSRSFPSFSRI---VSSLANVESLM 62
          S +RS+L AA+SRS A  T   A++  + P L  +++R  P  S +   V     VESL+
Sbjct: 8  SGARSMLRAASSRSAAASTGRFASQAKSAPPLFRATARRSPLLSPLRNPVELSFCVESLL 67

Query: 63 PLHTAVASARLKSKIAVDSHCWSWLSEG 87
          P H+A ASA + SK+++    + WLS+G
Sbjct: 68 PYHSATASALMTSKLSISGQTYGWLSDG 95

The following BLAST results are available for this feature:

BLAST of PI0010174.2 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZJ3	1.3e-04	38.20	Protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial OS=Arabidopsis thaliana OX=370...	[more]

BLAST of PI0010174.2 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BYV0	2.2e-31	94.25	Protein NUCLEAR FUSION DEFECTIVE 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BGG1	2.2e-31	94.25	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucumis ...	[more]
A0A0A0K7P3	1.4e-30	91.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G268490 PE=4 SV=1	[more]
A0A6J1C4G8	1.1e-25	82.76	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial OS=Momordica cha...	[more]
A0A6J1GKU0	3.4e-24	78.65	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like OS=Cucurbit...	[more]

BLAST of PI0010174.2 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447032.1	4.5e-31	94.25	PREDICTED: protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial-like ...	[more]
XP_011659076.1	2.9e-30	91.95	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucumis sativus...	[more]
XP_038887804.1	3.3e-29	89.53	protein NUCLEAR FUSION DEFECTIVE 6, mitochondrial [Benincasa hispida]	[more]
XP_022136047.1	2.2e-25	82.76	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Momordica chara...	[more]
XP_023531748.1	6.3e-25	80.23	protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial [Cucurbita pepo ...	[more]

BLAST of PI0010174.2 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39300.1	1.6e-13	51.09	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT4G39300.2	7.8e-13	50.55	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G20585.1	9.2e-06	38.20	nuclear fusion defective 6	[more]
AT2G20585.2	9.2e-06	38.20	nuclear fusion defective 6	[more]
AT2G20585.3	1.6e-05	38.64	nuclear fusion defective 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043459	NFD6/NOXY2-like	PANTHER	PTHR33156	OS02G0230000 PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR33156:SF37	BNAA06G40680D PROTEIN	coord: 1..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0010174	PI0010174	gene

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010174.2-five_prime_utr	PI0010174.2-five_prime_utr-chr01:6331272..6331337	five_prime_UTR

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010174.2-exon	PI0010174.2-exon-chr01:6331272..6331474	exon
PI0010174.2-exon	PI0010174.2-exon-chr01:6331621..6333090	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010174.2-cds	PI0010174.2-cds-chr01:6331338..6331474	CDS
PI0010174.2-cds	PI0010174.2-cds-chr01:6331621..6331831	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0010174.2-three_prime_utr	PI0010174.2-three_prime_utr-chr01:6331832..6333090	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0010174.2	PI0010174.2-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane