PI0008505.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0008505.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PHD finger protein MALE STERILITY 1
Location	chr10: 9675098 .. 9675472 (+)
Sequence length	375
RNA-Seq Expression	PI0008505.1
Synteny	PI0008505.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGTGGCGGAGGGGGAGAGAGGGTGTTTAGATTCAAAAGCTTTGGGGAGAATGGACATCCGGCAGAGCTTGTGGGGAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGTCGTGGCGAGGGGTTTCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCACCTTTCCATGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCATCGTGGGGGCGAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCAAAAGCAAATATGAATCTTTTATTGGGTTTGTCTTGGGAGAAAGGTATTTCTTAA

mRNA sequence

ATGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGTGGCGGAGGGGGAGAGAGGGTGTTTAGATTCAAAAGCTTTGGGGAGAATGGACATCCGGCAGAGCTTGTGGGGAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGTCGTGGCGAGGGGTTTCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCACCTTTCCATGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCATCGTGGGGGCGAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCAAAAGCAAATATGAATCTTTTATTGGGTTTGTCTTGGGAGAAAGGTATTTCTTAA

Coding sequence (CDS)

ATGACGGACGTGATTGGGAAGAAGAGGAGGAGGGGTGGCGGAGGGGGAGAGAGGGTGTTTAGATTCAAAAGCTTTGGGGAGAATGGACATCCGGCAGAGCTTGTGGGGAGATTCCGAGAGAATGTAGAGGCACTGCTAGGGTTTGGGAAGTGGGAGAGCGGAGAGTGTCGTGGCGAGGGGTTTCGGTGTTGGTCGTTTCGGCTGCAGGTTCAGCGGCAGCCACCTTTCCATGTCGTGCTGTTTGTGGTGGAGGAGGCGGTGGAGGCAGCCATCGTGGGGGCGAGGCAGTGTAAACAATGTCAGTATGTTGGTAAGGTTTCAAAAGCAAATATGAATCTTTTATTGGGTTTGTCTTGGGAGAAAGGTATTTCTTAA

Protein sequence

MTDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVGKVSKANMNLLLGLSWEKGIS

Homology

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BLAST of PI0008505.1 vs. ExPASy Swiss-Prot
Match: Q9FMS5 (PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 4.2e-17
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 5   IGKKRRRGGGGGERVFRFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECRGEGFRC 64
           I KKR+R   G  RVFR K+FGE+GHPAE+    FR+N+  LL FG +ES    G     
Sbjct: 13  IPKKRKR---GESRVFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFESSGLMGS---- 72

Query: 65  WSFRLQVQRQP-PFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           WSF+L++QR P P +V+LFVVEE +EA++    +C  CQYVG
Sbjct: 73  WSFQLEIQRNPNPLYVLLFVVEEPIEASL--NLRCNHCQYVG 105

[Close]

BLAST of PI0008505.1 vs. ExPASy Swiss-Prot
Match: Q67V61 (PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PTC1 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 3.3e-14
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 5   IGKKRRRGGGGGERVFRFKSFGENGHPAELVGR--FRENVEALLGFGKWESGECRGEGFR 64
           +G  RRR    GE +FRF++F + G+PA   G   FR+NV  LLGF   E+G   GE  +
Sbjct: 9   LGSSRRR--KRGEMLFRFEAFCQPGYPANFAGAGGFRDNVRTLLGFAHLEAG-VHGE-TK 68

Query: 65  CWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           CWSF+L++ R PP  V LFVVEE V A+    RQC  C+++G
Sbjct: 69  CWSFQLELHRHPPTVVRLFVVEEEVAAS--PHRQCHLCRHIG 104

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BLAST of PI0008505.1 vs. ExPASy TrEMBL
Match: A0A5D3CR48 (PHD finger protein MALE STERILITY 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold186G00700 PE=4 SV=1)

HSP 1 Score: 214.9 bits (546), Expect = 1.9e-52
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 2   TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGF 61
           TDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGEC GEGF
Sbjct: 3   TDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGF 62

Query: 62  RCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVGKVSKAN-MNLL 115
           RCWSFRLQVQRQPP HVVLFV+EEAVE+  V +RQCKQCQYVGKVSKAN MNLL
Sbjct: 63  RCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL 116

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BLAST of PI0008505.1 vs. ExPASy TrEMBL
Match: A0A0A0KPP3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G291670 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 2.4e-52
Identity = 101/110 (91.82%), Postives = 104/110 (94.55%), Query Frame = 0


Query: 2   TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGF 61
           TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGEC  EGF
Sbjct: 3   TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSCEGF 62

Query: 62  RCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVGKVSKANM 112
           RCWSFRLQVQRQPPFHVVLFV+EEAVE   V ARQCKQCQYVGK+SKAN+
Sbjct: 63  RCWSFRLQVQRQPPFHVVLFVLEEAVETVTVAARQCKQCQYVGKISKANI 112

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BLAST of PI0008505.1 vs. ExPASy TrEMBL
Match: A0A1S3C4G3 (PHD finger protein MALE STERILITY 1 OS=Cucumis melo OX=3656 GN=LOC103496772 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 2.1e-48
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 2   TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGF 61
           TDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGEC GEGF
Sbjct: 3   TDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGF 62

Query: 62  RCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           RCWSFRLQVQRQPP HVVLFV+EEAVE+  V +RQCKQCQYVG
Sbjct: 63  RCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105

[Close]

BLAST of PI0008505.1 vs. ExPASy TrEMBL
Match: A0A6J1DTQ4 (PHD finger protein MALE STERILITY 1 OS=Momordica charantia OX=3673 GN=LOC111023034 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 3.8e-37
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MTDVIGKKRRRG-GGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGE 60
           M + IG+KRRRG GGGGE+VFRFKSFGENG+P E VGRFRENV ALLGFG+WESG+C G 
Sbjct: 1   MAEAIGRKRRRGAGGGGEKVFRFKSFGENGYPVEFVGRFRENVVALLGFGRWESGDCAG- 60

Query: 61  GFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           G + WSF+LQVQRQPPFH+V+FVVEE VEAA    R CK CQYVG
Sbjct: 61  GLQSWSFQLQVQRQPPFHIVMFVVEEPVEAAPPAGRHCKDCQYVG 104

[Close]

BLAST of PI0008505.1 vs. ExPASy TrEMBL
Match: A0A6J1KWF9 (PHD finger protein MALE STERILITY 1 OS=Cucurbita maxima OX=3661 GN=LOC111498812 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.9e-33
Identity = 76/114 (66.67%), Postives = 82/114 (71.93%), Query Frame = 0


Query: 1   MTDVIGKKRRRGG----------GGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGK 60
           M D+I  KRRRG             G+RVFRFKSFG+NGHP + +G F ENVEALLGFG 
Sbjct: 1   MADLIAGKRRRGAAASSTSTSSTSSGDRVFRFKSFGKNGHPTQFLGCFWENVEALLGFGH 60

Query: 61  WESGECRGEGFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           WE+GEC    FRCWSFRLQVQR PPFHVVLFVVEE  EAA   AR CKQCQYVG
Sbjct: 61  WETGECSNR-FRCWSFRLQVQRHPPFHVVLFVVEEPAEAATAVARHCKQCQYVG 113

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BLAST of PI0008505.1 vs. NCBI nr
Match: KAA0032172.1 (PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa] >TYK14417.1 PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa])

HSP 1 Score: 214.9 bits (546), Expect = 3.9e-52
Identity = 104/114 (91.23%), Postives = 107/114 (93.86%), Query Frame = 0


Query: 2   TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGF 61
           TDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGEC GEGF
Sbjct: 3   TDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGF 62

Query: 62  RCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVGKVSKAN-MNLL 115
           RCWSFRLQVQRQPP HVVLFV+EEAVE+  V +RQCKQCQYVGKVSKAN MNLL
Sbjct: 63  RCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVGKVSKANIMNLL 116

[Close]

BLAST of PI0008505.1 vs. NCBI nr
Match: XP_004140423.1 (PHD finger protein MALE STERILITY 1 [Cucumis sativus] >KAE8648106.1 hypothetical protein Csa_004730 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 6.8e-49
Identity = 96/103 (93.20%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 2   TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGF 61
           TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGEC  EGF
Sbjct: 4   TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSCEGF 63

Query: 62  RCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           RCWSFRLQVQRQPPFHVVLFV+EEAVE   V ARQCKQCQYVG
Sbjct: 64  RCWSFRLQVQRQPPFHVVLFVLEEAVETVTVAARQCKQCQYVG 106

[Close]

BLAST of PI0008505.1 vs. NCBI nr
Match: XP_008456986.1 (PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo])

HSP 1 Score: 201.4 bits (511), Expect = 4.4e-48
Identity = 94/103 (91.26%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 2   TDVIGKKRRRGGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGEGF 61
           TDVIGKKRRRGGGGGERVF FKSFGENGHPAELVGRFRENVEALLGFGKWESGEC GEGF
Sbjct: 3   TDVIGKKRRRGGGGGERVFGFKSFGENGHPAELVGRFRENVEALLGFGKWESGECSGEGF 62

Query: 62  RCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           RCWSFRLQVQRQPP HVVLFV+EEAVE+  V +RQCKQCQYVG
Sbjct: 63  RCWSFRLQVQRQPPVHVVLFVLEEAVESCTVASRQCKQCQYVG 105

[Close]

BLAST of PI0008505.1 vs. NCBI nr
Match: XP_038891568.1 (PHD finger protein MALE STERILITY 1 [Benincasa hispida])

HSP 1 Score: 192.6 bits (488), Expect = 2.0e-45
Identity = 94/105 (89.52%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MTDVIGKKRRR-GGGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGE 60
           MT+V GKKRRR GGGGGERVFRFKSFGENGHPAELVG FRENVEALLGFG+ E GEC GE
Sbjct: 1   MTEVNGKKRRRGGGGGGERVFRFKSFGENGHPAELVGLFRENVEALLGFGRCEGGECGGE 60

Query: 61  GFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           GFRCWSFRLQVQRQPPFHVVLFVVEEA EAA V ARQCKQCQYVG
Sbjct: 61  GFRCWSFRLQVQRQPPFHVVLFVVEEAAEAATVAARQCKQCQYVG 105

[Close]

BLAST of PI0008505.1 vs. NCBI nr
Match: XP_022156066.1 (PHD finger protein MALE STERILITY 1 [Momordica charantia])

HSP 1 Score: 164.1 bits (414), Expect = 7.8e-37
Identity = 78/105 (74.29%), Postives = 88/105 (83.81%), Query Frame = 0


Query: 1   MTDVIGKKRRRG-GGGGERVFRFKSFGENGHPAELVGRFRENVEALLGFGKWESGECRGE 60
           M + IG+KRRRG GGGGE+VFRFKSFGENG+P E VGRFRENV ALLGFG+WESG+C G 
Sbjct: 1   MAEAIGRKRRRGAGGGGEKVFRFKSFGENGYPVEFVGRFRENVVALLGFGRWESGDCAG- 60

Query: 61  GFRCWSFRLQVQRQPPFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           G + WSF+LQVQRQPPFH+V+FVVEE VEAA    R CK CQYVG
Sbjct: 61  GLQSWSFQLQVQRQPPFHIVMFVVEEPVEAAPPAGRHCKDCQYVG 104

[Close]

BLAST of PI0008505.1 vs. TAIR 10
Match: AT5G22260.1 (RING/FYVE/PHD zinc finger superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 3.0e-18
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 0


Query: 5   IGKKRRRGGGGGERVFRFKSFGENGHPAELVG-RFRENVEALLGFGKWESGECRGEGFRC 64
           I KKR+R   G  RVFR K+FGE+GHPAE+    FR+N+  LL FG +ES    G     
Sbjct: 13  IPKKRKR---GESRVFRLKTFGESGHPAEMNELSFRDNLAKLLEFGHFESSGLMGS---- 72

Query: 65  WSFRLQVQRQP-PFHVVLFVVEEAVEAAIVGARQCKQCQYVG 105
           WSF+L++QR P P +V+LFVVEE +EA++    +C  CQYVG
Sbjct: 73  WSFQLEIQRNPNPLYVLLFVVEEPIEASL--NLRCNHCQYVG 105

The following BLAST results are available for this feature:

BLAST of PI0008505.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMS5	4.2e-17	50.98	PHD finger protein MALE STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=MS1 PE=1 ...	[more]
Q67V61	3.3e-14	47.06	PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=...	[more]

BLAST of PI0008505.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CR48	1.9e-52	91.23	PHD finger protein MALE STERILITY 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0KPP3	2.4e-52	91.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G291670 PE=4 SV=1	[more]
A0A1S3C4G3	2.1e-48	91.26	PHD finger protein MALE STERILITY 1 OS=Cucumis melo OX=3656 GN=LOC103496772 PE=4...	[more]
A0A6J1DTQ4	3.8e-37	74.29	PHD finger protein MALE STERILITY 1 OS=Momordica charantia OX=3673 GN=LOC1110230...	[more]
A0A6J1KWF9	1.9e-33	66.67	PHD finger protein MALE STERILITY 1 OS=Cucurbita maxima OX=3661 GN=LOC111498812 ...	[more]

BLAST of PI0008505.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032172.1	3.9e-52	91.23	PHD finger protein MALE STERILITY 1 [Cucumis melo var. makuwa] >TYK14417.1 PHD f...	[more]
XP_004140423.1	6.8e-49	93.20	PHD finger protein MALE STERILITY 1 [Cucumis sativus] >KAE8648106.1 hypothetical...	[more]
XP_008456986.1	4.4e-48	91.26	PREDICTED: PHD finger protein MALE STERILITY 1 [Cucumis melo]	[more]
XP_038891568.1	2.0e-45	89.52	PHD finger protein MALE STERILITY 1 [Benincasa hispida]	[more]
XP_022156066.1	7.8e-37	74.29	PHD finger protein MALE STERILITY 1 [Momordica charantia]	[more]

BLAST of PI0008505.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G22260.1	3.0e-18	50.98	RING/FYVE/PHD zinc finger superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46201:SF1	PHD FINGER PROTEIN MALE STERILITY 1	coord: 6..105
None	No IPR available	PANTHER	PTHR46201	PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED	coord: 6..105

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0008505	PI0008505	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008505.1-exon	PI0008505.1-exon-chr10:9675098..9675472	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008505.1-cds	PI0008505.1-cds-chr10:9675098..9675472	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0008505.1	PI0008505.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048655	anther wall tapetum morphogenesis
biological_process	GO:0071367	cellular response to brassinosteroid stimulus
biological_process	GO:0055046	microgametogenesis
biological_process	GO:0009846	pollen germination
biological_process	GO:0010208	pollen wall assembly
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046872	metal ion binding