PI0008429.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0008429.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr09: 13555478 .. 13556065 (+)
Sequence length	417
RNA-Seq Expression	PI0008429.1
Synteny	PI0008429.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTAACCACTATTTTAAGCTGGATGAGCTTTCACGATCATCCCTGACTATGCAAGTCAAGGCAACAAACCATGTGTATCATCAACTTTATGGCATATCCAGGGTTCCACCAGCAAAGACAGGCATGTAGTGAATTGCTTCAGAGTTGCAAACACGCACACGGTAGTGAACCCAGAGGATGGTTCTCAAAATTTATGTCCTGAATGCCACTAAAGAAGTCTATCTTCTACAACTATACTACTTCACAACCACCGGTATTCAAGCAAGTAGCTACCAATTTGGCTACAAGCTGGAACGCATTCTGAAGGGAATTCATCTTATCTTTATGTGCAAAATCAATATACCCTGATTCTCATACGGGAGTGAGATATCAGAGAATGAAAAACAGAGGAAATATCAGGGATAAAATGAAGCTGTTCAATTAAAAAGAATGTTAAAACTTAAAAGGAAAGGCCTCACTATCGTCTCCCGGCCTCCGTGTTCGATTAACTGTAGATTCGGCCAGCAAAACACGCTCGGAAAACCCTCATCTTTGAGGGAATCGGTTGAGATGCAGAAAGATAAAGAAGGTATACCTCAAGAATAA

mRNA sequence

ATGCCTAACCACTATTTTAAGCTGGATGAGCTTTCACGATCATCCCTGACTATGCAAGTCAAGGCAACAAACCATGTGTATCATCAACTTTATGGCATATCCAGGGTTCCACCAGCAAAGACAGGCATGATGGTTCTCAAAATTTATGTCCTGAATGCCACTAAAGAAGTCTATCTTCTACAACTATACTACTTCACAACCACCGGTATTCAAGCAAGTAGCTACCAATTTGGCTACAAGCTGGAACGCATTCTGAAGGGAATTCATCTTATCTTTATGAAAGGCCTCACTATCGTCTCCCGGCCTCCGTGTTCGATTAACTGTAGATTCGGCCAGCAAAACACGCTCGGAAAACCCTCATCTTTGAGGGAATCGGTTGAGATGCAGAAAGATAAAGAAGGTATACCTCAAGAATAA

Coding sequence (CDS)

ATGCCTAACCACTATTTTAAGCTGGATGAGCTTTCACGATCATCCCTGACTATGCAAGTCAAGGCAACAAACCATGTGTATCATCAACTTTATGGCATATCCAGGGTTCCACCAGCAAAGACAGGCATGATGGTTCTCAAAATTTATGTCCTGAATGCCACTAAAGAAGTCTATCTTCTACAACTATACTACTTCACAACCACCGGTATTCAAGCAAGTAGCTACCAATTTGGCTACAAGCTGGAACGCATTCTGAAGGGAATTCATCTTATCTTTATGAAAGGCCTCACTATCGTCTCCCGGCCTCCGTGTTCGATTAACTGTAGATTCGGCCAGCAAAACACGCTCGGAAAACCCTCATCTTTGAGGGAATCGGTTGAGATGCAGAAAGATAAAGAAGGTATACCTCAAGAATAA

Protein sequence

MPNHYFKLDELSRSSLTMQVKATNHVYHQLYGISRVPPAKTGMMVLKIYVLNATKEVYLLQLYYFTTTGIQASSYQFGYKLERILKGIHLIFMKGLTIVSRPPCSINCRFGQQNTLGKPSSLRESVEMQKDKEGIPQE

Homology

[Close]

BLAST of PI0008429.1 vs. ExPASy TrEMBL
Match: A0A0A0KRK5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387440 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.6e-44
Identity = 104/159 (65.41%), Postives = 115/159 (72.33%), Query Frame = 0


Query: 1   MPNHYFKLDELSRSSLT------------MQVKATNHVYHQLYGISRVPPAKTGMMVLKI 60
           MPNHYFKL+ELSRSSLT              ++ +   Y +     RV  + T  MVLKI
Sbjct: 1   MPNHYFKLNELSRSSLTSHGTKAYVSSDLWHIQGSTSKYRRAVNYFRVANSYTQRMVLKI 60

Query: 61  YVLNATKEVYLLQLYYFTTTGIQASSYQFGYKLERILKGIHLIFM---------KGLTIV 120
           YVLN T+EVYLLQL YFTTTGIQASSYQFGYKLERILKGI+LI            GLT+V
Sbjct: 61  YVLNTTEEVYLLQLSYFTTTGIQASSYQFGYKLERILKGIYLILCAKSIYPNSHTGLTVV 120

Query: 121 SRPPCSINCRFGQQNTLGKPSSLRESVEMQKDKEGIPQE 139
            RPPCSINCRFGQQNTLGKPSS+RESVEM+KDKEGIPQE
Sbjct: 121 LRPPCSINCRFGQQNTLGKPSSMRESVEMRKDKEGIPQE 159

[Close]

BLAST of PI0008429.1 vs. NCBI nr
Match: KGN50992.1 (hypothetical protein Csa_009144 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 3.3e-44
Identity = 104/159 (65.41%), Postives = 115/159 (72.33%), Query Frame = 0


Query: 1   MPNHYFKLDELSRSSLT------------MQVKATNHVYHQLYGISRVPPAKTGMMVLKI 60
           MPNHYFKL+ELSRSSLT              ++ +   Y +     RV  + T  MVLKI
Sbjct: 1   MPNHYFKLNELSRSSLTSHGTKAYVSSDLWHIQGSTSKYRRAVNYFRVANSYTQRMVLKI 60

Query: 61  YVLNATKEVYLLQLYYFTTTGIQASSYQFGYKLERILKGIHLIFM---------KGLTIV 120
           YVLN T+EVYLLQL YFTTTGIQASSYQFGYKLERILKGI+LI            GLT+V
Sbjct: 61  YVLNTTEEVYLLQLSYFTTTGIQASSYQFGYKLERILKGIYLILCAKSIYPNSHTGLTVV 120

Query: 121 SRPPCSINCRFGQQNTLGKPSSLRESVEMQKDKEGIPQE 139
            RPPCSINCRFGQQNTLGKPSS+RESVEM+KDKEGIPQE
Sbjct: 121 LRPPCSINCRFGQQNTLGKPSSMRESVEMRKDKEGIPQE 159

The following BLAST results are available for this feature:

BLAST of PI0008429.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0008429.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KRK5	1.6e-44	65.41	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G387440 PE=4 SV=1	[more]

BLAST of PI0008429.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN50992.1	3.3e-44	65.41	hypothetical protein Csa_009144 [Cucumis sativus]	[more]

BLAST of PI0008429.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..138

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0008429	PI0008429	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008429.1-exon	PI0008429.1-exon-chr09:13555478..13555605	exon
PI0008429.1-exon	PI0008429.1-exon-chr09:13555657..13555806	exon
PI0008429.1-exon	PI0008429.1-exon-chr09:13555927..13556065	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0008429.1-cds	PI0008429.1-cds-chr09:13555478..13555605	CDS
PI0008429.1-cds	PI0008429.1-cds-chr09:13555657..13555806	CDS
PI0008429.1-cds	PI0008429.1-cds-chr09:13555927..13556065	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0008429.1	PI0008429.1-protein	polypeptide