Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAAATCCCACCAATTTCAGGCATCAAAATACCAACTCTTTTCTTTCAATGCATTCTACAAGTTTACGTAAAACATCCCAATTACCACTTCCCTAATTTCCTCATATTCTCAAATAATTAAGAATAAAAACAACCTTCCTACGTCCAAGCTTTTGATTTTCTCTTTATTACATTGTTATTTATAATCATCAATGGCCACCACCAAGGCGGTTGGTTTGGTGATCTTGGTTTTGTTAATGCTGGATTTGGCTCTTGCTGCTAGGTTCTTCAGGGGTTATGGAGGTGGTGGCGGAGGTGGTAGTGGTGGCGGTGGAGGTGGAGGAGAAGGTTCAGGGCCTTGGTCGGGTTCGGGATATGGTTCAGGATATGGCTCGGGTTACGGTTCGGGATACGGCGGTGAAGAAGGCTATTCTAGATATGGAGATGAAGGCTACGGACCATATGGACCTTATAGTGGTGGTGGAGGTGGTGGTGGAGGGGGTGGTGGCGGTGGAGGTGGTGGCGGCACAAATGGAGCCGAGTATGGTCGTGGATTTGGGGCGGGAAGTGGGTCGGGGTACGGGTCTGGTGGTGGAGTAGGACGTGGTGGAGGAGGTGGCGGTGGCAGCGGGGGAGGAGGAGGTGGAGGTTCGGGAATTGGAAGTGGGTCGGGATATGGCTCAGGATATGGAAGTGGAGGAGGCTATGGAAGTGGTGGAGGTAGGGGTGGAGGAGGCGGCGGTGGAGGAGGTGGTGGTGGAGGCGGCGGTGGAGGAGGGATGGGCGGAGGGTCTGGGTATGGTTCAGGATATGGGTCAGGGTACGGAGGAGGTGGTGATGAAGAATCACCATGAACGTAATTCGATGATACCTACAAATGAATTTATCTTTCAAACCATTTGAAATAAAAGTGCAATGGAAACTTCTACTTAGAAAGATGATATTAGGATTTGATGGGTTGCGATGGTCCAAAATATAAATTCCAAGTATTACCAAATCCTCTTTCATCTAAATAAATAAATTGCTAGCGACCTGTTTTTCATTGAAGTGCAATTTAATGAATTCTATTCTCTTATTAAATATTCATAGTGATTTATCAAAAAATATATATATATATTTTTTTTTTTT
mRNA sequence
CTTAAATCCCACCAATTTCAGGCATCAAAATACCAACTCTTTTCTTTCAATGCATTCTACAAGTTTACGTAAAACATCCCAATTACCACTTCCCTAATTTCCTCATATTCTCAAATAATTAAGAATAAAAACAACCTTCCTACGTCCAAGCTTTTGATTTTCTCTTTATTACATTGTTATTTATAATCATCAATGGCCACCACCAAGGCGGTTGGTTTGGTGATCTTGGTTTTGTTAATGCTGGATTTGGCTCTTGCTGCTAGGTTCTTCAGGGGTTATGGAGGTGGTGGCGGAGGTGGTAGTGGTGGCGGTGGAGGTGGAGGAGAAGGTTCAGGGCCTTGGTCGGGTTCGGGATATGGTTCAGGATATGGCTCGGGTTACGGTTCGGGATACGGCGGTGAAGAAGGCTATTCTAGATATGGAGATGAAGGCTACGGACCATATGGACCTTATAGTGGTGGTGGAGGTGGTGGTGGAGGGGGTGGTGGCGGTGGAGGTGGTGGCGGCACAAATGGAGCCGAGTATGGTCGTGGATTTGGGGCGGGAAGTGGGTCGGGGTACGGGTCTGGTGGTGGAGTAGGACGTGGTGGAGGAGGTGGCGGTGGCAGCGGGGGAGGAGGAGGTGGAGGTTCGGGAATTGGAAGTGGGTCGGGATATGGCTCAGGATATGGAAGTGGAGGAGGCTATGGAAGTGGTGGAGGTAGGGGTGGAGGAGGCGGCGGTGGAGGAGGTGGTGGTGGAGGCGGCGGTGGAGGAGGGATGGGCGGAGGGTCTGGGTATGGTTCAGGATATGGGTCAGGGTACGGAGGAGGTGGTGATGAAGAATCACCATGAACGTAATTCGATGATACCTACAAATGAATTTATCTTTCAAACCATTTGAAATAAAAGTGCAATGGAAACTTCTACTTAGAAAGATGATATTAGGATTTGATGGGTTGCGATGGTCCAAAATATAAATTCCAAGTATTACCAAATCCTCTTTCATCTAAATAAATAAATTGCTAGCGACCTGTTTTTCATTGAAGTGCAATTTAATGAATTCTATTCTCTTATTAAATATTCATAGTGATTTATCAAAAAATATATATATATATTTTTTTTTTTT
Coding sequence (CDS)
ATGGCCACCACCAAGGCGGTTGGTTTGGTGATCTTGGTTTTGTTAATGCTGGATTTGGCTCTTGCTGCTAGGTTCTTCAGGGGTTATGGAGGTGGTGGCGGAGGTGGTAGTGGTGGCGGTGGAGGTGGAGGAGAAGGTTCAGGGCCTTGGTCGGGTTCGGGATATGGTTCAGGATATGGCTCGGGTTACGGTTCGGGATACGGCGGTGAAGAAGGCTATTCTAGATATGGAGATGAAGGCTACGGACCATATGGACCTTATAGTGGTGGTGGAGGTGGTGGTGGAGGGGGTGGTGGCGGTGGAGGTGGTGGCGGCACAAATGGAGCCGAGTATGGTCGTGGATTTGGGGCGGGAAGTGGGTCGGGGTACGGGTCTGGTGGTGGAGTAGGACGTGGTGGAGGAGGTGGCGGTGGCAGCGGGGGAGGAGGAGGTGGAGGTTCGGGAATTGGAAGTGGGTCGGGATATGGCTCAGGATATGGAAGTGGAGGAGGCTATGGAAGTGGTGGAGGTAGGGGTGGAGGAGGCGGCGGTGGAGGAGGTGGTGGTGGAGGCGGCGGTGGAGGAGGGATGGGCGGAGGGTCTGGGTATGGTTCAGGATATGGGTCAGGGTACGGAGGAGGTGGTGATGAAGAATCACCATGA
Protein sequence
MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYGSGYGSGYGGEEGYSRYGDEGYGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGSGSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGGGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP
Homology
BLAST of PI0008220.1 vs. ExPASy TrEMBL
Match:
A0A1S3BGF1 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103489565 PE=4 SV=1)
HSP 1 Score: 222.2 bits (565), Expect = 2.0e-54
Identity = 202/215 (93.95%), Postives = 204/215 (94.88%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGS-GPWSGSGYGSGY 60
MATTKAVG V+LVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGS GPW GSGYGSGY
Sbjct: 1 MATTKAVGFVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGYGSGY 60
Query: 61 GSGYGSGYGGEEGYSRYGDEGYGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGS 120
GSGYGSGYGGEEGYSRYGDEGYGPYG YSGGGGGGGGGGGGGGG GAEYGRGFG G
Sbjct: 61 GSGYGSGYGGEEGYSRYGDEGYGPYGRYSGGGGGGGGGGGGGGGSAI-GAEYGRGFGMGG 120
Query: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGG-GG 180
GSGYGSGGGVGRGGGGGGGSGGGGGGGSG+GSGSGYGSGYGSGGGYGSGGGRGGGGG GG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGGGGVGG 180
Query: 181 GGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214
GGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP
Sbjct: 181 GGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214
BLAST of PI0008220.1 vs. ExPASy TrEMBL
Match:
A0A0A0KUV7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1)
HSP 1 Score: 214.9 bits (546), Expect = 3.2e-52
Identity = 196/214 (91.59%), Postives = 196/214 (91.59%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MATTKA GLVILVLLMLDLALAARFFRGY GGGSGGGGGGGEGSGPWSGSGYGSGYG
Sbjct: 1 MATTKAAGLVILVLLMLDLALAARFFRGY----GGGSGGGGGGGEGSGPWSGSGYGSGYG 60
Query: 61 SGYGSGYGGEEGYSRYGDEG-YGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGS 120
SGYGSGYGGEEGYSRYGDEG YGPYGPYSGGGGGGGGGGGGGGG GAEYGRGFGAGS
Sbjct: 61 SGYGSGYGGEEGYSRYGDEGRYGPYGPYSGGGGGGGGGGGGGGGSAI-GAEYGRGFGAGS 120
Query: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180
GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180
Query: 181 GGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214
GGG GGGSGYGSGYGSGYGGGGDEESP
Sbjct: 181 GGG--------GGGSGYGSGYGSGYGGGGDEESP 201
BLAST of PI0008220.1 vs. ExPASy TrEMBL
Match:
A0A6J1JQB8 (putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111487374 PE=4 SV=1)
HSP 1 Score: 186.0 bits (471), Expect = 1.6e-43
Identity = 187/212 (88.21%), Postives = 192/212 (90.57%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MAT A+GLV+LVLLM DL LAARF RGYGGGGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1 MATNGAIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
Query: 61 SGYGSGYGGEEGYSRYGDEGYGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGSG 120
SGYGSGY G+ GY RYGDEGYGPYG GGGGGGGGGGGGGGG NGA YG+GFG+GSG
Sbjct: 61 SGYGSGY-GDGGYPRYGDEGYGPYG---SGGGGGGGGGGGGGGGSANGAGYGQGFGSGSG 120
Query: 121 SGYGSGGGVGRGGGGGGGS--GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG 180
SGYGSGGGVGRGGGGGGG GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG
Sbjct: 121 SGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG 180
Query: 181 GGGGGGGGGG-GMGGGSGYGSGYGSGYGGGGD 210
GGGGGGGGGG GMGGGSGYGSGYGSGYGGGGD
Sbjct: 181 GGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 208
BLAST of PI0008220.1 vs. ExPASy TrEMBL
Match:
A0A1R3IXG4 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09162 PE=4 SV=1)
HSP 1 Score: 93.6 bits (231), Expect = 1.1e-15
Identity = 149/219 (68.04%), Postives = 165/219 (75.34%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
M +++ +G LVLL +DLA AAR F+G G GGGGG GGG GGG G G G G GSGYG
Sbjct: 4 MRSSRVIGAAFLVLLFVDLAFAARSFKGVGKGGGGGGGGGSGGGGGGGGAIGLGSGSGYG 63
Query: 61 SGYGSGYGGEEGYSRYGDEGYGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGSG 120
SGYGSG G GYG G SGGGGGGGGGGGGGGGGG++G+ G G+G+GSG
Sbjct: 64 SGYGSGSG----------SGYGSGG--SGGGGGGGGGGGGGGGGGSSGS--GSGYGSGSG 123
Query: 121 SGYGSGGGVGRGGGGGGGSGGGGGGGSGIGS--GSGYGSGYGSGGGYGSGGGRGGGGGGG 180
SGYGSGGG+G GGGGGGG GGGGGGG G GS GSGYGSGYGSG GYGSGGG+GGGGGGG
Sbjct: 124 SGYGSGGGIGGGGGGGGGRGGGGGGGGGNGSGGGSGYGSGYGSGSGYGSGGGKGGGGGGG 183
Query: 181 GGGGGGGGGGGMGGGSGY------GSGYGSGYGGGGDEE 212
GGGGGGGGGGG G GSG+ GSGYGSGYG GGD++
Sbjct: 184 GGGGGGGGGGGGGNGSGHGSGYGSGSGYGSGYGSGGDDD 208
BLAST of PI0008220.1 vs. ExPASy TrEMBL
Match:
A0A2P5FLB9 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_055020 PE=4 SV=1)
HSP 1 Score: 92.8 bits (229), Expect = 1.8e-15
Identity = 152/226 (67.26%), Postives = 162/226 (71.68%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLML-DLALAARFF-----RGYGGGGGGGSGGGGGGGEGSGPWSGSG 60
MA+TK +G L++L+L DL+LAAR RG GGGGGGGSGGGGG GSG SGSG
Sbjct: 1 MASTKVIGATFLIILLLVDLSLAARTLKATIGRGGGGGGGGGSGGGGGSAIGSGLGSGSG 60
Query: 61 YGSGYGSGYGSGYGGEEGYSRYGDEGYGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRG 120
YGSG GSGYGSG G GGGGGGGGGGGGG GGG+ G+ G G
Sbjct: 61 YGSGSGSGYGSGGG-------------------KGGGGGGGGGGGGGSGGGSGGSGSGYG 120
Query: 121 FGAGSGSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGG 180
G GSGSGYGSGGG G GGGGGGG GGGGGGGSGIG GSGYGSGYGSG GYGSGGG+GGG
Sbjct: 121 SGYGSGSGYGSGGGNGGGGGGGGGRGGGGGGGSGIGGGSGYGSGYGSGSGYGSGGGKGGG 180
Query: 181 GGGGGGGGGGGGGGGM------GGGSGYGSGYGSGYGGG-GDEESP 214
GGGGGGGGGGGGGGG G GSGYG GYGSGYGGG D+ SP
Sbjct: 181 GGGGGGGGGGGGGGGSGNGSGNGSGSGYGEGYGSGYGGGDADDFSP 207
BLAST of PI0008220.1 vs. NCBI nr
Match:
XP_008447018.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])
HSP 1 Score: 222.2 bits (565), Expect = 4.1e-54
Identity = 202/215 (93.95%), Postives = 204/215 (94.88%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGS-GPWSGSGYGSGY 60
MATTKAVG V+LVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGS GPW GSGYGSGY
Sbjct: 1 MATTKAVGFVVLVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGGPWPGSGYGSGY 60
Query: 61 GSGYGSGYGGEEGYSRYGDEGYGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGS 120
GSGYGSGYGGEEGYSRYGDEGYGPYG YSGGGGGGGGGGGGGGG GAEYGRGFG G
Sbjct: 61 GSGYGSGYGGEEGYSRYGDEGYGPYGRYSGGGGGGGGGGGGGGGSAI-GAEYGRGFGMGG 120
Query: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGG-GG 180
GSGYGSGGGVGRGGGGGGGSGGGGGGGSG+GSGSGYGSGYGSGGGYGSGGGRGGGGG GG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGVGSGSGYGSGYGSGGGYGSGGGRGGGGGVGG 180
Query: 181 GGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214
GGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP
Sbjct: 181 GGGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214
BLAST of PI0008220.1 vs. NCBI nr
Match:
XP_031741764.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus])
HSP 1 Score: 216.1 bits (549), Expect = 3.0e-52
Identity = 198/214 (92.52%), Postives = 198/214 (92.52%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MATTKA GLVILVLLMLDLALAARFFRGY GGGSGGGGGGGEGSGPWSGSGYGSGYG
Sbjct: 1 MATTKAAGLVILVLLMLDLALAARFFRGY----GGGSGGGGGGGEGSGPWSGSGYGSGYG 60
Query: 61 SGYGSGYGGEEGYSRYGDEG-YGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGS 120
SGYGSGYGGEEGYSRYGDEG YGPYGPYSGGGGGGGGGGGGGGG GAEYGRGFGAGS
Sbjct: 61 SGYGSGYGGEEGYSRYGDEGRYGPYGPYSGGGGGGGGGGGGGGGSAI-GAEYGRGFGAGS 120
Query: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180
GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG
Sbjct: 121 GSGYGSGGGVGRGGGGGGGSGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGGG 180
Query: 181 GGGGGGGGGGMGGGSGYGSGYGSGYGGGGDEESP 214
GGGGG GGGSGYGSGYGSGYGGGGDEESP
Sbjct: 181 GGGGG------GGGSGYGSGYGSGYGGGGDEESP 203
BLAST of PI0008220.1 vs. NCBI nr
Match:
KAG6601193.1 (hypothetical protein SDJN03_06426, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 194.9 bits (494), Expect = 7.1e-46
Identity = 188/212 (88.68%), Postives = 193/212 (91.04%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MATT +GLV+LVLLM DL LAARF RGYGGGGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1 MATTGTIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
Query: 61 SGYGSGYGGEEGYSRYGDEGYGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGSG 120
SGYGSGY G+ GY RYGDE YGPYGPY GGGGGGGGGGGGGGGG NGA YG GFG+GSG
Sbjct: 61 SGYGSGY-GDGGYPRYGDEEYGPYGPYGSGGGGGGGGGGGGGGGGANGAGYGHGFGSGSG 120
Query: 121 SGYGSGGGVGRGGGGGGGS--GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG 180
SGYGSGGGVGRGGGGGGG GGGGGGGSGIGSGSGYGSGYGSGGGYG+GGGRGGGGGGG
Sbjct: 121 SGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGNGGGRGGGGGGG 180
Query: 181 GGGGGGGGGG-GMGGGSGYGSGYGSGYGGGGD 210
GGGGGGGGGG GMGGGSGYGSGYGSGYGGGGD
Sbjct: 181 GGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 211
BLAST of PI0008220.1 vs. NCBI nr
Match:
XP_023550088.1 (glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 186.8 bits (473), Expect = 1.9e-43
Identity = 188/216 (87.04%), Postives = 193/216 (89.35%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MATT A+GLV+LVLLM DL LAARF RGY GGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1 MATTGAIGLVLLVLLMADLTLAARFLRGY----GGGSGGGGGGGEGSRPWSGSGYGSGYG 60
Query: 61 SGYGSGYGGEEGYSRYGDEGYGPYGPY----SGGGGGGGGGGGGGGGGGTNGAEYGRGFG 120
SGYGSGY G+ GY RYGDEGYGPYGPY SGGGGGGGGGGGGGGGGG NGA YG GFG
Sbjct: 61 SGYGSGY-GDGGYPRYGDEGYGPYGPYGPYGSGGGGGGGGGGGGGGGGGANGAGYGHGFG 120
Query: 121 AGSGSGYGSGGGVGRGGGGGGGS--GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGG 180
+GSGSGYGSGGGVGRGGGGGGG GGGGGGGSGIGSGSGYGSGYGSGGGYG+GGGRGGG
Sbjct: 121 SGSGSGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGNGGGRGGG 180
Query: 181 GGGGGGGGGGGGGG-GMGGGSGYGSGYGSGYGGGGD 210
GGGGGGGGGGGGGG GMGGGSGYGSGYGSGYGGGGD
Sbjct: 181 GGGGGGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 211
BLAST of PI0008220.1 vs. NCBI nr
Match:
XP_022990525.1 (putative glycine-rich cell wall structural protein 1 [Cucurbita maxima])
HSP 1 Score: 186.0 bits (471), Expect = 3.3e-43
Identity = 187/212 (88.21%), Postives = 192/212 (90.57%), Query Frame = 0
Query: 1 MATTKAVGLVILVLLMLDLALAARFFRGYGGGGGGGSGGGGGGGEGSGPWSGSGYGSGYG 60
MAT A+GLV+LVLLM DL LAARF RGYGGGGGGGSGGGGGGGEGS PWSGSGYGSGYG
Sbjct: 1 MATNGAIGLVLLVLLMADLTLAARFLRGYGGGGGGGSGGGGGGGEGSRPWSGSGYGSGYG 60
Query: 61 SGYGSGYGGEEGYSRYGDEGYGPYGPYSGGGGGGGGGGGGGGGGGTNGAEYGRGFGAGSG 120
SGYGSGY G+ GY RYGDEGYGPYG GGGGGGGGGGGGGGG NGA YG+GFG+GSG
Sbjct: 61 SGYGSGY-GDGGYPRYGDEGYGPYG---SGGGGGGGGGGGGGGGSANGAGYGQGFGSGSG 120
Query: 121 SGYGSGGGVGRGGGGGGGS--GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG 180
SGYGSGGGVGRGGGGGGG GGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG
Sbjct: 121 SGYGSGGGVGRGGGGGGGGGRGGGGGGGSGIGSGSGYGSGYGSGGGYGSGGGRGGGGGGG 180
Query: 181 GGGGGGGGGG-GMGGGSGYGSGYGSGYGGGGD 210
GGGGGGGGGG GMGGGSGYGSGYGSGYGGGGD
Sbjct: 181 GGGGGGGGGGEGMGGGSGYGSGYGSGYGGGGD 208
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3BGF1 | 2.0e-54 | 93.95 | glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... | [more] |
| A0A0A0KUV7 | 3.2e-52 | 91.59 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G622440 PE=4 SV=1 | [more] |
| A0A6J1JQB8 | 1.6e-43 | 88.21 | putative glycine-rich cell wall structural protein 1 OS=Cucurbita maxima OX=3661... | [more] |
| A0A1R3IXG4 | 1.1e-15 | 68.04 | Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_09162 PE=4 ... | [more] |
| A0A2P5FLB9 | 1.8e-15 | 67.26 | Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_055020 PE=4 SV... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| XP_008447018.1 | 4.1e-54 | 93.95 | PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo] | [more] |
| XP_031741764.1 | 3.0e-52 | 92.52 | glycine-rich cell wall structural protein 2 [Cucumis sativus] | [more] |
| KAG6601193.1 | 7.1e-46 | 88.68 | hypothetical protein SDJN03_06426, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| XP_023550088.1 | 1.9e-43 | 87.04 | glycine-rich cell wall structural protein 2-like [Cucurbita pepo subsp. pepo] | [more] |
| XP_022990525.1 | 3.3e-43 | 88.21 | putative glycine-rich cell wall structural protein 1 [Cucurbita maxima] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| PI0008220 | PI0008220 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0008220.1-exon | PI0008220.1-exon-chr10:21378438..21379545 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0008220.1-three_prime_utr | PI0008220.1-three_prime_utr-chr10:21378438..21378711 | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0008220.1-cds | PI0008220.1-cds-chr10:21378712..21379353 | CDS |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0008220.1-five_prime_utr | PI0008220.1-five_prime_utr-chr10:21379354..21379545 | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0008220.1 | PI0008220.1-protein | polypeptide |
