PI0007386.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0007386.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr09: 11798696 .. 11799522 (+)
Sequence length	786
RNA-Seq Expression	PI0007386.1
Synteny	PI0007386.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGAAAATTCACAGAATTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTAACCAAGGAAGTAAATGAACTTAAATCTCAGATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAATGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGTCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATACCGGTTGGTGAGACAACTCTAATCTAAGGTGGGGAAACGACAACCAAAGACCTTCACAAGCAACCTCCTCTTCAAACAATCAAGGAACAAATTTGGAAGATTTAGTTAAAGCTTTTGCTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTGACTAAATCAATTAGCAAGCTAGAAGGTAAAGTCAAACTTCCGGCTCAACCTGATCATGCAAACGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGCTAACTTCTACCCCTATCCTTCTAGAAAACAAGGATGAGAAAAATGAAGAAAAATTAGAAACTAGTACTTTGCCATCTAGTTCTAAAGGTAAATCCCATGTTCTATAGTTGAGAAGAGAGTTATCGTACCCAAGGGAGCAAACCGCAACTTCAAATTGATGTTAGGTTTAAATGATAAGAGAAATAAAGCTTCAAGGCACAAAAGAGTATTAGTAGTAGGGGGTTTGTTGTTGCGAGAAAATAAAAGGAAAATAAAAGGGAGTAAAGAAATGGAGTAG

mRNA sequence

ATGGCTGAAAATTCACAGAATTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTAACCAAGGAAGTAAATGAACTTAAATCTCAGATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAATGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGTCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATACCGGTTGGTGGGGAAACGACAACCAAAGACCTTCACAAGCAACCTCCTCTTCAAACAATCAAGGAACAAATTTGGAAGATTTAGTTAAAGCTTTTGCTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTGACTAAATCAATTAGCAAGCTAGAAGGTAAAGTCAAACTTCCGGCTCAACCTGATCATGCAAACGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGCTAACTTCTACCCCTATCCTTCTAGAAAACAAGGATGAGAAAAATGAAGAAAAATTAGAAACTAGTACTTTGCCATCTAGTTCTAAAGTTGAGAAGAGAGTTATCGTACCCAAGGGAGCAAACCGCAACTTCAAATTGATGTTAGGTTTAAATGATAAGAGAAATAAAGCTTCAAGGCACAAAAGAGTATTAGTAGTAGGGGGTTTGTTGTTGCGAGAAAATAAAAGGAAAATAAAAGGGAGTAAAGAAATGGAGTAG

Coding sequence (CDS)

ATGGCTGAAAATTCACAGAATTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTAACCAAGGAAGTAAATGAACTTAAATCTCAGATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAATGTGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGTCCTGACTTAGTGGAAGAAGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATACCGGTTGGTGGGGAAACGACAACCAAAGACCTTCACAAGCAACCTCCTCTTCAAACAATCAAGGAACAAATTTGGAAGATTTAGTTAAAGCTTTTGCTACTAATACCATCTCTTTTCAAAATGAAATGAAGCAACAAATGTCTCATCTGACTAAATCAATTAGCAAGCTAGAAGGTAAAGTCAAACTTCCGGCTCAACCTGATCATGCAAACGTAAGTGCCATCTCACTTAGAAGCGGTAAAATTCTGGAAACCCCTTCAAGTGAAGAAAAGCTAACTTCTACCCCTATCCTTCTAGAAAACAAGGATGAGAAAAATGAAGAAAAATTAGAAACTAGTACTTTGCCATCTAGTTCTAAAGTTGAGAAGAGAGTTATCGTACCCAAGGGAGCAAACCGCAACTTCAAATTGATGTTAGGTTTAAATGATAAGAGAAATAAAGCTTCAAGGCACAAAAGAGTATTAGTAGTAGGGGGTTTGTTGTTGCGAGAAAATAAAAGGAAAATAAAAGGGAGTAAAGAAATGGAGTAG

Protein sequence

MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHPNDKCPDLVEEANVIRKYDPHSNTYNTGWWGNDNQRPSQATSSSNNQGTNLEDLVKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSSEEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEKRVIVPKGANRNFKLMLGLNDKRNKASRHKRVLVVGGLLLRENKRKIKGSKEME

Homology

[Close]

BLAST of PI0007386.1 vs. ExPASy TrEMBL
Match: A0A5D3CB46 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold544G00170 PE=4 SV=1)

HSP 1 Score: 289.3 bits (739), Expect = 1.6e-74
Identity = 147/205 (71.71%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHP 60
           MAENS++FGNRASELDNSLTKEV+ELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHP
Sbjct: 74  MAENSESFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHP 133

Query: 61  NDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLEDL 120
           NDKCP ++E+ N++R+YDPHSNTYN+GW       WGNDNQ+ +QA S+S+NQGTNLED+
Sbjct: 134 NDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGNDNQKYTQAPSTSSNQGTNLEDI 193

Query: 121 VKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSS 180
           +KA ATNT+SFQ +MKQQM+ LT +ISK++GK KLPAQPDHANVSAISLRSGKIL+TP++
Sbjct: 194 IKALATNTLSFQQKMKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTT 253

Query: 181 -EEKLTSTPILLENKDEKNEEKLET 198
            E+KLTS P+ L +K+E  EEK+++
Sbjct: 254 KEKKLTSKPLPLNSKNESKEEKVDS 278

[Close]

BLAST of PI0007386.1 vs. ExPASy TrEMBL
Match: E5GBZ4 (Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.8e-73
Identity = 148/216 (68.52%), Postives = 182/216 (84.26%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHP 60
           M ENSQNFGNRA ELDN LTKEV+ELKSQMLNMTTLLTSFVQG  +KV KCGVC LVGHP
Sbjct: 25  MTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCRLVGHP 84

Query: 61  NDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLEDL 120
           NDKCP+++E+ N++RKYDP+ NTYN+GW       WGNDNQ+ +QA  +S+NQGTNLED+
Sbjct: 85  NDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWGNDNQKHTQAPPTSSNQGTNLEDI 144

Query: 121 VKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSS 180
           +KA ATNT+SFQ EMKQQM+ LT +ISK++GK KLPAQPD+ANVSAISLRSGKIL+TP++
Sbjct: 145 IKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANVSAISLRSGKILDTPTT 204

Query: 181 -EEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEK 209
            E+K+TS  + L +K+E  EEK+ET+  PS+SK +K
Sbjct: 205 KEKKVTSKLLPLNSKNESKEEKVETNLSPSNSKNDK 240

[Close]

BLAST of PI0007386.1 vs. ExPASy TrEMBL
Match: A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.4e-73
Identity = 148/216 (68.52%), Postives = 182/216 (84.26%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHP 60
           MAENSQ+F NRASELDNSLTKEV+ELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHP
Sbjct: 110 MAENSQSFENRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHP 169

Query: 61  NDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLEDL 120
           NDKCP+++E+ N++RKYDPH NTYN+GW       WGNDNQ+ +QA S+S+NQGTNLED+
Sbjct: 170 NDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDI 229

Query: 121 VKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSS 180
           +KA ATNT+SFQ EMKQQM+ LT +ISK++GK KL AQ ++ANVSA+SLRSGKIL+TP++
Sbjct: 230 IKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLSAQSNYANVSAVSLRSGKILDTPTT 289

Query: 181 -EEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEK 209
            E+K TS P+ L  K+E  EEK+ET+  P +SK +K
Sbjct: 290 KEKKATSKPLPLNTKNECKEEKIETNPSPYNSKNDK 325

[Close]

BLAST of PI0007386.1 vs. ExPASy TrEMBL
Match: A0A5A7VQ60 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1704G00030 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 4.0e-73
Identity = 149/217 (68.66%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGH 60
           MA+N Q+FGNRASE DNSLTKEV+ELKSQMLNM TTLLTSFVQG  +KV KCGVCGLVGH
Sbjct: 175 MAKNFQSFGNRASEFDNSLTKEVSELKSQMLNMTTTLLTSFVQGTPLKVTKCGVCGLVGH 234

Query: 61  PNDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLED 120
            N+KCP+++E+ N++R+YDPHSNTYN+GW       WGNDNQ+ +QA S+S+NQGTNLED
Sbjct: 235 LNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLED 294

Query: 121 LVKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPS 180
           ++KA ATNT+SFQ EMKQQM+ LT +ISK++GK KLPAQ DHANVSAISLRSGKIL+TP+
Sbjct: 295 IIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQLDHANVSAISLRSGKILDTPT 354

Query: 181 S-EEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEK 209
           + E+K+TS P+ L +K+E  EEK+ET+  PS+SK +K
Sbjct: 355 TKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSKNDK 391

[Close]

BLAST of PI0007386.1 vs. ExPASy TrEMBL
Match: A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 5.3e-73
Identity = 147/216 (68.06%), Postives = 183/216 (84.72%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHP 60
           MA+NSQ FGNRASEL+NSLTKEV+ELKSQMLNMTTLLTSFVQG  +KV KC VCGLVGHP
Sbjct: 264 MAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCRVCGLVGHP 323

Query: 61  NDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLEDL 120
           NDKCP+++EE N+++KYDP+SNTYNTGW       WGNDNQ+ +QA ++S+NQ TNL+D+
Sbjct: 324 NDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWGNDNQKHTQAPTTSSNQSTNLKDI 383

Query: 121 VKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSS 180
           +KA ATNT+SFQ EMKQQM+ LT +ISK++GK KLPAQP+HANVS ISLRSGKIL+TPS+
Sbjct: 384 IKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPAQPNHANVSVISLRSGKILDTPST 443

Query: 181 -EEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEK 209
            E+K+TS P+ L +K+E  EEK+ET+   S+ K +K
Sbjct: 444 KEKKVTSIPLPLNSKNESKEEKVETNPSLSNPKNDK 479

[Close]

BLAST of PI0007386.1 vs. NCBI nr
Match: TYK07549.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 289.3 bits (739), Expect = 3.4e-74
Identity = 147/205 (71.71%), Postives = 179/205 (87.32%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHP 60
           MAENS++FGNRASELDNSLTKEV+ELKSQMLNMTTLLTSFVQG   KV KCGVCGLVGHP
Sbjct: 74  MAENSESFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPPKVTKCGVCGLVGHP 133

Query: 61  NDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLEDL 120
           NDKCP ++E+ N++R+YDPHSNTYN+GW       WGNDNQ+ +QA S+S+NQGTNLED+
Sbjct: 134 NDKCPKVIEDVNIVRRYDPHSNTYNSGWRDNLNLRWGNDNQKYTQAPSTSSNQGTNLEDI 193

Query: 121 VKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSS 180
           +KA ATNT+SFQ +MKQQM+ LT +ISK++GK KLPAQPDHANVSAISLRSGKIL+TP++
Sbjct: 194 IKALATNTLSFQQKMKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTT 253

Query: 181 -EEKLTSTPILLENKDEKNEEKLET 198
            E+KLTS P+ L +K+E  EEK+++
Sbjct: 254 KEKKLTSKPLPLNSKNESKEEKVDS 278

[Close]

BLAST of PI0007386.1 vs. NCBI nr
Match: ADN33993.1 (retrotransposon gag protein [Cucumis melo subsp. melo])

HSP 1 Score: 285.8 bits (730), Expect = 3.7e-73
Identity = 148/216 (68.52%), Postives = 182/216 (84.26%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHP 60
           M ENSQNFGNRA ELDN LTKEV+ELKSQMLNMTTLLTSFVQG  +KV KCGVC LVGHP
Sbjct: 25  MTENSQNFGNRALELDNFLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCRLVGHP 84

Query: 61  NDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLEDL 120
           NDKCP+++E+ N++RKYDP+ NTYN+GW       WGNDNQ+ +QA  +S+NQGTNLED+
Sbjct: 85  NDKCPEVIEDVNIVRKYDPYGNTYNSGWRDNPNLRWGNDNQKHTQAPPTSSNQGTNLEDI 144

Query: 121 VKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSS 180
           +KA ATNT+SFQ EMKQQM+ LT +ISK++GK KLPAQPD+ANVSAISLRSGKIL+TP++
Sbjct: 145 IKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYANVSAISLRSGKILDTPTT 204

Query: 181 -EEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEK 209
            E+K+TS  + L +K+E  EEK+ET+  PS+SK +K
Sbjct: 205 KEKKVTSKLLPLNSKNESKEEKVETNLSPSNSKNDK 240

[Close]

BLAST of PI0007386.1 vs. NCBI nr
Match: KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.4 bits (729), Expect = 4.9e-73
Identity = 148/216 (68.52%), Postives = 182/216 (84.26%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHP 60
           MAENSQ+F NRASELDNSLTKEV+ELKSQMLNMTTLLTSFVQG  +KV KCGVCGLVGHP
Sbjct: 110 MAENSQSFENRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHP 169

Query: 61  NDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLEDL 120
           NDKCP+++E+ N++RKYDPH NTYN+GW       WGNDNQ+ +QA S+S+NQGTNLED+
Sbjct: 170 NDKCPEVIEDVNIVRKYDPHGNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLEDI 229

Query: 121 VKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSS 180
           +KA ATNT+SFQ EMKQQM+ LT +ISK++GK KL AQ ++ANVSA+SLRSGKIL+TP++
Sbjct: 230 IKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLSAQSNYANVSAVSLRSGKILDTPTT 289

Query: 181 -EEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEK 209
            E+K TS P+ L  K+E  EEK+ET+  P +SK +K
Sbjct: 290 KEKKATSKPLPLNTKNECKEEKIETNPSPYNSKNDK 325

[Close]

BLAST of PI0007386.1 vs. NCBI nr
Match: KAA0067359.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.6 bits (727), Expect = 8.3e-73
Identity = 149/217 (68.66%), Postives = 185/217 (85.25%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNM-TTLLTSFVQGGSVKVAKCGVCGLVGH 60
           MA+N Q+FGNRASE DNSLTKEV+ELKSQMLNM TTLLTSFVQG  +KV KCGVCGLVGH
Sbjct: 175 MAKNFQSFGNRASEFDNSLTKEVSELKSQMLNMTTTLLTSFVQGTPLKVTKCGVCGLVGH 234

Query: 61  PNDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLED 120
            N+KCP+++E+ N++R+YDPHSNTYN+GW       WGNDNQ+ +QA S+S+NQGTNLED
Sbjct: 235 LNEKCPEVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHTQAPSTSSNQGTNLED 294

Query: 121 LVKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPS 180
           ++KA ATNT+SFQ EMKQQM+ LT +ISK++GK KLPAQ DHANVSAISLRSGKIL+TP+
Sbjct: 295 IIKALATNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQLDHANVSAISLRSGKILDTPT 354

Query: 181 S-EEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEK 209
           + E+K+TS P+ L +K+E  EEK+ET+  PS+SK +K
Sbjct: 355 TKEKKVTSKPLPLNSKNESKEEKVETNPSPSNSKNDK 391

[Close]

BLAST of PI0007386.1 vs. NCBI nr
Match: KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 284.3 bits (726), Expect = 1.1e-72
Identity = 147/216 (68.06%), Postives = 183/216 (84.72%), Query Frame = 0


Query: 1   MAENSQNFGNRASELDNSLTKEVNELKSQMLNMTTLLTSFVQGGSVKVAKCGVCGLVGHP 60
           MA+NSQ FGNRASEL+NSLTKEV+ELKSQMLNMTTLLTSFVQG  +KV KC VCGLVGHP
Sbjct: 264 MAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLLTSFVQGTPLKVTKCRVCGLVGHP 323

Query: 61  NDKCPDLVEEANVIRKYDPHSNTYNTGW-------WGNDNQRPSQATSSSNNQGTNLEDL 120
           NDKCP+++EE N+++KYDP+SNTYNTGW       WGNDNQ+ +QA ++S+NQ TNL+D+
Sbjct: 324 NDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWGNDNQKHTQAPTTSSNQSTNLKDI 383

Query: 121 VKAFATNTISFQNEMKQQMSHLTKSISKLEGKVKLPAQPDHANVSAISLRSGKILETPSS 180
           +KA ATNT+SFQ EMKQQM+ LT +ISK++GK KLPAQP+HANVS ISLRSGKIL+TPS+
Sbjct: 384 IKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPAQPNHANVSVISLRSGKILDTPST 443

Query: 181 -EEKLTSTPILLENKDEKNEEKLETSTLPSSSKVEK 209
            E+K+TS P+ L +K+E  EEK+ET+   S+ K +K
Sbjct: 444 KEKKVTSIPLPLNSKNESKEEKVETNPSLSNPKNDK 479

The following BLAST results are available for this feature:

BLAST of PI0007386.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0007386.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CB46	1.6e-74	71.71	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
E5GBZ4	1.8e-73	68.52	Retrotransposon gag protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]
A0A5D3CRR8	2.4e-73	68.52	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7VQ60	4.0e-73	68.66	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SRF5	5.3e-73	68.06	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0007386.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07549.1	3.4e-74	71.71	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
ADN33993.1	3.7e-73	68.52	retrotransposon gag protein [Cucumis melo subsp. melo]	[more]
KAA0047407.1	4.9e-73	68.52	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos...	[more]
KAA0067359.1	8.3e-73	68.66	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30663.1 retrotranspos...	[more]
KAA0031967.1	1.1e-72	68.06	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos...	[more]

BLAST of PI0007386.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 125..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..107

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0007386	PI0007386	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0007386.1-exon	PI0007386.1-exon-chr09:11798696..11798958	exon
PI0007386.1-exon	PI0007386.1-exon-chr09:11798980..11799332	exon
PI0007386.1-exon	PI0007386.1-exon-chr09:11799353..11799522	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0007386.1-cds	PI0007386.1-cds-chr09:11798696..11798958	CDS
PI0007386.1-cds	PI0007386.1-cds-chr09:11798980..11799332	CDS
PI0007386.1-cds	PI0007386.1-cds-chr09:11799353..11799522	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0007386.1	PI0007386.1-protein	polypeptide