PI0006576.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0006576.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr01: 4380990 .. 4381927 (+)
Sequence length	753
RNA-Seq Expression	PI0006576.1
Synteny	PI0006576.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGAGTTTCTTAGTAACTCTTCCGTCGCCGACGATTCTCAGTCCGCCGCTCAAGTTACCGAGCTCTGTTGGGAAAGCATGCTGCTTGCAACTAGGTAGGGCGGTGGGATATCGGAGAGTTACAATGAGAGGGGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCAGTGCAATCGTTGAAGCGAACGAAGAAAGATTTACAACAATTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTTGATATGTTGGCTGTTCTTCGCGAGCTCCTTCGCCAAAACGAGTGTTCTTTGGCTCTCAAGGTGATTCCTCTGCACTCAGCTCTTATGTTTATCTGCATCATCGATTGATTAGCTATCGAAATTATTCAATATTGCATGATCGGTATCCACAGCAATGGCTAGATACAAATTTTTGCTGATTGTGATTCCTTCAATATTTCTCGCTGATATTCTGTATTACTGTACTTTCGATTCATGAGTGTTAGGTTTTCGAAGATGTTAGAAACGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTTCAGTATTGGCTAGCAATGGATTATTCGAACGAATACAAATTATTCTTTCGTACATGAAAGCAGAAACTGATTTAGCACCTGAAATTGACGGGTTTAACGCTCTTTTGAAGGCATTGGTTAGTCATAATTTAGGTGAACTGGCGGTGGAGTCGTATTACTTGATGAAGGAAGTAGGCTGTGAGCCAGATAAGGCTTCTTTCAGGGTTGTCATAAAAGGATTGGAATCAAAGGGAGAGGCAGTTGATTTAAGAACTGTGAAACAGGATGCACAAAAGCTTTATGGTGAATCACTCGAGTTTTTGGAGGAAGAAGAAGAGGGAGCTACAGCCATATTTATACACTGA

mRNA sequence

ATGATGAGTTTCTTAGTAACTCTTCCGTCGCCGACGATTCTCAGTCCGCCGCTCAAGTTACCGAGCTCTGTTGGGAAAGCATGCTGCTTGCAACTAGGTAGGGCGGTGGGATATCGGAGAGTTACAATGAGAGGGGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCAGTGCAATCGTTGAAGCGAACGAAGAAAGATTTACAACAATTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTTGATATGTTGGCTGTTCTTCGCGAGCTCCTTCGCCAAAACGAGTGTTCTTTGGCTCTCAAGGTTTTCGAAGATGTTAGAAACGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTTCAGTATTGGCTAGCAATGGATTATTCGAACGAATACAAATTATTCTTTCGTACATGAAAGCAGAAACTGATTTAGCACCTGAAATTGACGGGTTTAACGCTCTTTTGAAGGCATTGGTTAGTCATAATTTAGGTGAACTGGCGGTGGAGTCGTATTACTTGATGAAGGAAGTAGGCTGTGAGCCAGATAAGGCTTCTTTCAGGGTTGTCATAAAAGGATTGGAATCAAAGGGAGAGGCAGTTGATTTAAGAACTGTGAAACAGGATGCACAAAAGCTTTATGGTGAATCACTCGAGTTTTTGGAGGAAGAAGAAGAGGGAGCTACAGCCATATTTATACACTGA

Coding sequence (CDS)

ATGATGAGTTTCTTAGTAACTCTTCCGTCGCCGACGATTCTCAGTCCGCCGCTCAAGTTACCGAGCTCTGTTGGGAAAGCATGCTGCTTGCAACTAGGTAGGGCGGTGGGATATCGGAGAGTTACAATGAGAGGGGGAAGTGAAAACCGGAAGCCACTGCAGAAGGGGAGGAACCTCAGCATCGAAGCAATTCAAGCAGTGCAATCGTTGAAGCGAACGAAGAAAGATTTACAACAATTGGACCGAGTGTATGATTCCAAAATTAGGCGCTTATTGAAGTTTGATATGTTGGCTGTTCTTCGCGAGCTCCTTCGCCAAAACGAGTGTTCTTTGGCTCTCAAGGTTTTCGAAGATGTTAGAAACGAACACTGGTACAAGCCTCAGGTCTCGCTGTATGCTGATATTATTTCAGTATTGGCTAGCAATGGATTATTCGAACGAATACAAATTATTCTTTCGTACATGAAAGCAGAAACTGATTTAGCACCTGAAATTGACGGGTTTAACGCTCTTTTGAAGGCATTGGTTAGTCATAATTTAGGTGAACTGGCGGTGGAGTCGTATTACTTGATGAAGGAAGTAGGCTGTGAGCCAGATAAGGCTTCTTTCAGGGTTGTCATAAAAGGATTGGAATCAAAGGGAGAGGCAGTTGATTTAAGAACTGTGAAACAGGATGCACAAAAGCTTTATGGTGAATCACTCGAGTTTTTGGAGGAAGAAGAAGAGGGAGCTACAGCCATATTTATACACTGA

Protein sequence

MMSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLGELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEEEGATAIFIH

Homology

[Close]

BLAST of PI0006576.1 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.2e-18
Identity = 64/193 (33.16%), Postives = 106/193 (54.92%), Query Frame = 0


Query: 50  RKPLQKGRNL-SIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNE 109
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DMLAV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 110 CSLALKVFEDVRNEHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGF 169
            +LA+K+FE ++ + WY+P V +Y D+I  LA +   +    +   MK E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 170 NALLKALVSHNLGELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQK 229
             +++  +       A+  Y  M +    P++  FRV++KGL      +    VK+D ++
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 230 LYGESLEFLEEEE 242
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

[Close]

BLAST of PI0006576.1 vs. ExPASy Swiss-Prot
Match: Q9LVW6 (Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.7e-17
Identity = 69/177 (38.98%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 45  GGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELL 104
           G  +NR PL KGR LS EAIQ++QSLKR  +    L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 105 RQNECSLALKVFEDVRNEHWYKP-QVSLYADIISVLASNGLFERIQIILSYMKAETDLAP 164
           RQ+ C+LA+ V   +R E  Y P  + LYADI++ L  N  F+ I  ++  +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 165 EIDGFNALLKALVSHNLGELAVESYYLMKEVG-----CEPDKASFRVVIKGLESKGE 216
           +      L++A+V     E  V  Y LM+E G      E D+    V+ KGL   GE
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of PI0006576.1 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 1.2e-15
Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 59  LSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFED 118
           +S E + A + LKR +    +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 119 VRNEHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSH 178
           VR E WY+P +  Y D++ +LA N   +  + +   +K E  L  +   F  L++  + +
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 179 NLGELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLY 231
            L   A+  Y  M+E    P    FRV++KGL    E  +   VK D  +L+
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELF 169

[Close]

BLAST of PI0006576.1 vs. ExPASy Swiss-Prot
Match: O82178 (Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX=3702 GN=At2g35130 PE=3 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-08
Identity = 34/112 (30.36%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 111 LALKVFEDVRNEHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNA 170
           ++ K++ ++R+ H  KP +  Y  +++  A  GL E+ + I   ++ E  L P++  +NA
Sbjct: 282 MSWKLYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNA 341

Query: 171 LLKALVSHNLGELAVESYYLMKEVGCEPDKASFRVVI-----KGLESKGEAV 218
           L+++         A E + LM+ +GCEPD+AS+ +++      GL S  EAV
Sbjct: 342 LMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391

[Close]

BLAST of PI0006576.1 vs. ExPASy Swiss-Prot
Match: Q9SCP4 (Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX=3702 GN=At3g53170 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 2.1e-07
Identity = 40/149 (26.85%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 61  IEAIQAVQSLKRTKKDLQQLDRVYDS-KIRRLLKFDMLAVLRELLRQNECSLALKVFEDV 120
           ++  + +  + RT   ++ ++R  +S K   L    +L  L E +++N    ALK+F  +
Sbjct: 25  VDPKKELSRILRTDAAVKGIERKANSEKYLTLWPKAVLEALDEAIKENRWQSALKIFNLL 84

Query: 121 RNEHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHN 180
           R +HWY+P+   Y  +  VL +    ++  ++   M +E  L P ID + +L+       
Sbjct: 85  RKQHWYEPRCKTYTKLFKVLGNCKQPDQASLLFEVMLSE-GLKPTIDVYTSLISVYGKSE 144

Query: 181 LGELAVESYYLMKEVG-CEPDKASFRVVI 208
           L + A  +   MK V  C+PD  +F V+I
Sbjct: 145 LLDKAFSTLEYMKSVSDCKPDVFTFTVLI 172

[Close]

BLAST of PI0006576.1 vs. ExPASy TrEMBL
Match: A0A5A7UZI6 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold54G00170 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 4.1e-123
Identity = 234/249 (93.98%), Postives = 241/249 (96.79%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL+TLPSPTILSPPLKLPSSV K CCLQLGRA GY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           EHWYKPQVSLYADII+VLASNGLFER+QIILSYMKAETDLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           +LA+ESYYLMKEVGCEP+KASFR+VIKGLE KGEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 242 EGATAIFIH 251
           EGATAI IH
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of PI0006576.1 vs. ExPASy TrEMBL
Match: A0A1S3BRZ8 (pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=3656 GN=LOC103492562 PE=4 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 4.1e-123
Identity = 234/249 (93.98%), Postives = 241/249 (96.79%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL+TLPSPTILSPPLKLPSSV K CCLQLGRA GY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           EHWYKPQVSLYADII+VLASNGLFER+QIILSYMKAETDLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           +LA+ESYYLMKEVGCEP+KASFR+VIKGLE KGEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 242 EGATAIFIH 251
           EGATAI IH
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of PI0006576.1 vs. ExPASy TrEMBL
Match: A0A5D3CCT4 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00060 PE=4 SV=1)

HSP 1 Score: 449.1 bits (1154), Expect = 1.2e-122
Identity = 233/249 (93.57%), Postives = 240/249 (96.39%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL+TLPSPTILSPPLKLPSSV K CCLQLGRA GY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           EHWYKPQVSLYADII+VLASNGLFER+QIILSYMKAETDLAPEIDGFNALLK LV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKVLVGHNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           +LA+ESYYLMKEVGCEP+KASFR+VIKGLE KGEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 242 EGATAIFIH 251
           EGATAI IH
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of PI0006576.1 vs. ExPASy TrEMBL
Match: A0A0A0K6A9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1)

HSP 1 Score: 438.3 bits (1126), Expect = 2.1e-119
Identity = 229/248 (92.34%), Postives = 235/248 (94.76%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL T  SPTI SP LK PSSVG ACCLQLGRA GY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           EHWYKPQVSLYADII+VLASNGLFER+QIILSYMKAE DLAPEIDGFNALLKALVSHNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           ELA+ESYYLMK+VGCEPDKASFR+VIKGLESKGEAVDLRTVKQDAQ+LYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 242 EGATAIFI 250
           EGATA  I
Sbjct: 241 EGATATSI 248

[Close]

BLAST of PI0006576.1 vs. ExPASy TrEMBL
Match: A0A6J1HX85 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111468293 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 1.1e-107
Identity = 210/249 (84.34%), Postives = 224/249 (89.96%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL T PS TILSPP  L  S GK   L+LGR  GYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKR KKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           E WYKPQVSLYADI+SVLASNGLFE++QII SY+KAETDLAPEI+GFN LLKALVS+NLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYLKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           ELA+ESYYLMKEVGCEPDKASFR+VIKGLES  E+VDLR VK+DAQ+LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKASFRIVIKGLESTRESVDLRPVKKDAQELYGESLEFLEEED 240

Query: 242 EGATAIFIH 251
           E AT I  H
Sbjct: 241 EAATGISTH 249

[Close]

BLAST of PI0006576.1 vs. NCBI nr
Match: XP_008451190.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis melo] >KAA0059596.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 450.7 bits (1158), Expect = 8.4e-123
Identity = 234/249 (93.98%), Postives = 241/249 (96.79%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL+TLPSPTILSPPLKLPSSV K CCLQLGRA GY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           EHWYKPQVSLYADII+VLASNGLFER+QIILSYMKAETDLAPEIDGFNALLKALV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKALVGHNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           +LA+ESYYLMKEVGCEP+KASFR+VIKGLE KGEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 242 EGATAIFIH 251
           EGATAI IH
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of PI0006576.1 vs. NCBI nr
Match: TYK08129.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 449.1 bits (1154), Expect = 2.4e-122
Identity = 233/249 (93.57%), Postives = 240/249 (96.39%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL+TLPSPTILSPPLKLPSSV K CCLQLGRA GY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLLTLPSPTILSPPLKLPSSVRKPCCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           EHWYKPQVSLYADII+VLASNGLFER+QIILSYMKAETDLAPEIDGFNALLK LV HNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAETDLAPEIDGFNALLKVLVGHNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           +LA+ESYYLMKEVGCEP+KASFR+VIKGLE KGEAVDLRTVKQDAQKLYGESLEFLEE E
Sbjct: 181 KLAMESYYLMKEVGCEPNKASFRIVIKGLELKGEAVDLRTVKQDAQKLYGESLEFLEEAE 240

Query: 242 EGATAIFIH 251
           EGATAI IH
Sbjct: 241 EGATAISIH 249

[Close]

BLAST of PI0006576.1 vs. NCBI nr
Match: XP_031744771.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 hypothetical protein Csa_020464 [Cucumis sativus])

HSP 1 Score: 438.3 bits (1126), Expect = 4.3e-119
Identity = 229/248 (92.34%), Postives = 235/248 (94.76%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL T  SPTI SP LK PSSVG ACCLQLGRA GY RVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATPSSPTIFSPLLKFPSSVGTACCLQLGRAEGYPRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRK 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           EHWYKPQVSLYADII+VLASNGLFER+QIILSYMKAE DLAPEIDGFNALLKALVSHNLG
Sbjct: 121 EHWYKPQVSLYADIITVLASNGLFERVQIILSYMKAEADLAPEIDGFNALLKALVSHNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           ELA+ESYYLMK+VGCEPDKASFR+VIKGLESKGEAVDLRTVKQDAQ+LYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKDVGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQRLYGESLEFLEEEE 240

Query: 242 EGATAIFI 250
           EGATA  I
Sbjct: 241 EGATATSI 248

[Close]

BLAST of PI0006576.1 vs. NCBI nr
Match: XP_038888189.1 (protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 430.6 bits (1106), Expect = 9.0e-117
Identity = 225/249 (90.36%), Postives = 234/249 (93.98%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL+  PSPTILSP  KL SS G+A CL LGRA GYR+VTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLIRPPSPTILSPSYKLLSSGGEASCLLLGRAEGYRKVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVRN
Sbjct: 61  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRN 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           EHWYKPQVSLYADII VLASNGLFER+QII SY+KAETDLAPEIDGFNALLKALVSHNLG
Sbjct: 121 EHWYKPQVSLYADIIRVLASNGLFERVQIIHSYLKAETDLAPEIDGFNALLKALVSHNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           ELA+ESYYLMKE+GCEPDKASFR+VIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE
Sbjct: 181 ELAMESYYLMKEIGCEPDKASFRIVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 240

Query: 242 EGATAIFIH 251
           E A AI  H
Sbjct: 241 EAAIAISTH 249

[Close]

BLAST of PI0006576.1 vs. NCBI nr
Match: XP_022952712.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata])

HSP 1 Score: 399.4 bits (1025), Expect = 2.2e-107
Identity = 210/249 (84.34%), Postives = 223/249 (89.56%), Query Frame = 0


Query: 2   MSFLVTLPSPTILSPPLKLPSSVGKACCLQLGRAVGYRRVTMRGGSENRKPLQKGRNLSI 61
           MSFL T PS TILSPP  L  S GK   L+LGR  GYRRVTMRGGSENRKPLQKGRNLSI
Sbjct: 1   MSFLATTPSSTILSPPYTLLGSGGKVSYLRLGRVEGYRRVTMRGGSENRKPLQKGRNLSI 60

Query: 62  EAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRN 121
           EAIQAVQSLKR KKDLQQLDRVYDSKIRRLLKFDM+AVLRELLRQNECSLALKVFEDVR 
Sbjct: 61  EAIQAVQSLKRAKKDLQQLDRVYDSKIRRLLKFDMMAVLRELLRQNECSLALKVFEDVRK 120

Query: 122 EHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLG 181
           E WYKPQVSLYADI+SVLASNGLFE++QII SY KAETDLAPEI+GFN LLKALVS+NLG
Sbjct: 121 EDWYKPQVSLYADIVSVLASNGLFEQVQIIHSYFKAETDLAPEIEGFNNLLKALVSYNLG 180

Query: 182 ELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEE 241
           ELA+ESYYLMKEVGCEPDK SFR+VIKGLES  E+VDLRTVK+DAQ+LYGESLEFLEEE+
Sbjct: 181 ELAMESYYLMKEVGCEPDKTSFRIVIKGLESTRESVDLRTVKKDAQELYGESLEFLEEED 240

Query: 242 EGATAIFIH 251
           E AT I  H
Sbjct: 241 EAATGISTH 249

[Close]

BLAST of PI0006576.1 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 224.9 bits (572), Expect = 7.0e-59
Identity = 122/217 (56.22%), Postives = 152/217 (70.05%), Query Frame = 0


Query: 41  VTMRGGSENRKPLQKGRNLSIEAIQAVQSLKR---------------TKKDLQQLDRVYD 100
           + MR  S+NRKPLQ+GR LSIEAIQAVQ+LKR               T      LDRV  
Sbjct: 487 IKMRDRSKNRKPLQRGRMLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVII 546

Query: 101 SKIRRLLKFDMLAVLRELLRQNECSLALKVFEDVRNEHWYKPQVSLYADIISVLASNGLF 160
           SK RRLLKFDM+AVLRELLRQNECSLALKVFE++R E+WYKPQV +Y D+I+V+A N L 
Sbjct: 547 SKFRRLLKFDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLM 606

Query: 161 ERIQIILSYMKAETDLAPEIDGFNALLKALVSHNLGELAVESYYLMKEVGCEPDKASFRV 220
           E +  + S MK+E  L  EI+ FN LL  L++H L +L ++ Y  M+ +G EPD+ASFRV
Sbjct: 607 EEVNYLYSAMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRV 666

Query: 221 VIKGLESKGEAVDLRTVKQDAQKLYGESLEFLEEEEE 243
           ++ GLES GE      V+QDA + YGESLEF+EE+EE
Sbjct: 667 LVLGLESNGEMGLSAIVRQDAHEYYGESLEFIEEDEE 703

[Close]

BLAST of PI0006576.1 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 95.1 bits (235), Expect = 8.4e-20
Identity = 64/193 (33.16%), Postives = 106/193 (54.92%), Query Frame = 0


Query: 50  RKPLQKGRNL-SIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNE 109
           R PL +G+ L   EA+  +  LKR K+D ++LD+   + + RLLK DMLAV+ EL RQ E
Sbjct: 63  RGPLWRGKKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEE 122

Query: 110 CSLALKVFEDVRNEHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGF 169
            +LA+K+FE ++ + WY+P V +Y D+I  LA +   +    +   MK E +L P+   +
Sbjct: 123 TALAIKMFEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKE-NLFPDSQTY 182

Query: 170 NALLKALVSHNLGELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQK 229
             +++  +       A+  Y  M +    P++  FRV++KGL      +    VK+D ++
Sbjct: 183 TEVIRGFLRDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGL--LPHPLLRNKVKKDFEE 242

Query: 230 LYGESLEFLEEEE 242
           L+ E   +   EE
Sbjct: 243 LFPEKHAYDPPEE 252

[Close]

BLAST of PI0006576.1 vs. TAIR 10
Match: AT3G27750.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-18
Identity = 69/177 (38.98%), Postives = 96/177 (54.24%), Query Frame = 0


Query: 45  GGSENRKPLQKGRNLSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELL 104
           G  +NR PL KGR LS EAIQ++QSLKR  +    L       +RRL+K D+++VLRELL
Sbjct: 34  GPRDNRGPLLKGRILSTEAIQSIQSLKRAHRTGVSLSLTL-RPLRRLIKSDLISVLRELL 93

Query: 105 RQNECSLALKVFEDVRNEHWYKP-QVSLYADIISVLASNGLFERIQIILSYMKAETDLAP 164
           RQ+ C+LA+ V   +R E  Y P  + LYADI++ L  N  F+ I  ++  +    D   
Sbjct: 94  RQDYCTLAVHVLSTLRTE--YPPLDLVLYADIVNALTRNKEFDEIDRLIGEIDG-IDQRS 153

Query: 165 EIDGFNALLKALVSHNLGELAVESYYLMKEVG-----CEPDKASFRVVIKGLESKGE 216
           +      L++A+V     E  V  Y LM+E G      E D+    V+ KGL   GE
Sbjct: 154 DDKALAKLIRAVVGAERRESVVRVYTLMRESGWGSESWEADEYVAEVLSKGLLRLGE 206

[Close]

BLAST of PI0006576.1 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 8.6e-17
Identity = 57/172 (33.14%), Postives = 91/172 (52.91%), Query Frame = 0


Query: 59  LSIEAIQAVQSLKRTKKDLQQLDRVYDSKIRRLLKFDMLAVLRELLRQNECSLALKVFED 118
           +S E + A + LKR +    +LDR   S + RLLK D+++VL E  RQN+  L +K++E 
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 119 VRNEHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNALLKALVSH 178
           VR E WY+P +  Y D++ +LA N   +  + +   +K E  L  +   F  L++  + +
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQ-HTFGDLVRGFLDN 120

Query: 179 NLGELAVESYYLMKEVGCEPDKASFRVVIKGLESKGEAVDLRTVKQDAQKLY 231
            L   A+  Y  M+E    P    FRV++KGL    E  +   VK D  +L+
Sbjct: 121 ELPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELRE--KVKDDFLELF 169

[Close]

BLAST of PI0006576.1 vs. TAIR 10
Match: AT2G35130.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-09
Identity = 34/112 (30.36%), Postives = 63/112 (56.25%), Query Frame = 0


Query: 111 LALKVFEDVRNEHWYKPQVSLYADIISVLASNGLFERIQIILSYMKAETDLAPEIDGFNA 170
           ++ K++ ++R+ H  KP +  Y  +++  A  GL E+ + I   ++ E  L P++  +NA
Sbjct: 282 MSWKLYCEMRS-HQCKPNICTYTALVNAFAREGLCEKAEEIFEQLQ-EDGLEPDVYVYNA 341

Query: 171 LLKALVSHNLGELAVESYYLMKEVGCEPDKASFRVVI-----KGLESKGEAV 218
           L+++         A E + LM+ +GCEPD+AS+ +++      GL S  EAV
Sbjct: 342 LMESYSRAGYPYGAAEIFSLMQHMGCEPDRASYNIMVDAYGRAGLHSDAEAV 391

The following BLAST results are available for this feature:

BLAST of PI0006576.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	1.2e-18	33.16	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q9LVW6	1.7e-17	38.98	Protein THYLAKOID ASSEMBLY 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=T...	[more]
Q1PFH7	1.2e-15	33.14	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
O82178	7.1e-08	30.36	Pentatricopeptide repeat-containing protein At2g35130 OS=Arabidopsis thaliana OX...	[more]
Q9SCP4	2.1e-07	26.85	Pentatricopeptide repeat-containing protein At3g53170 OS=Arabidopsis thaliana OX...	[more]

BLAST of PI0006576.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZI6	4.1e-123	93.98	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3BRZ8	4.1e-123	93.98	pentatricopeptide repeat-containing protein At3g46870-like OS=Cucumis melo OX=36...	[more]
A0A5D3CCT4	1.2e-122	93.57	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0K6A9	2.1e-119	92.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G027870 PE=4 SV=1	[more]
A0A6J1HX85	1.1e-107	84.34	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]

BLAST of PI0006576.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451190.1	8.4e-123	93.98	PREDICTED: pentatricopeptide repeat-containing protein At3g46870-like [Cucumis m...	[more]
TYK08129.1	2.4e-122	93.57	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_031744771.1	4.3e-119	92.34	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucumis sativus] >KGN43371.1 h...	[more]
XP_038888189.1	9.0e-117	90.36	protein THYLAKOID ASSEMBLY 8, chloroplastic-like [Benincasa hispida]	[more]
XP_022952712.1	2.2e-107	84.34	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata]	[more]

BLAST of PI0006576.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G09320.1	7.0e-59	56.22	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT3G46870.1	8.4e-20	33.16	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT3G27750.1	1.2e-18	38.98	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G62350.1	8.6e-17	33.14	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT2G35130.1	5.1e-09	30.36	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 58..229 e-value: 4.1E-44 score: 152.4
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 166..210 e-value: 7.2E-8 score: 32.5
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 168..199 e-value: 0.001 score: 17.1
IPR044190	Protein THYLAKOID ASSEMBLY 8-like	PANTHER	PTHR47594	PPR CONTAINING PLANT-LIKE PROTEIN	coord: 18..244
None	No IPR available	PANTHER	PTHR47594:SF4	THYLAKOID ASSEMBLY8	coord: 18..244

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0006576	PI0006576	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006576.1-exon	PI0006576.1-exon-chr01:4380990..4381331	exon
PI0006576.1-exon	PI0006576.1-exon-chr01:4381517..4381927	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0006576.1-cds	PI0006576.1-cds-chr01:4380990..4381331	CDS
PI0006576.1-cds	PI0006576.1-cds-chr01:4381517..4381927	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0006576.1	PI0006576.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000373	Group II intron splicing
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003723	RNA binding