PI0006378.1 (mRNA) Melon (PI 482460) v1

Overview
NamePI0006378.1
TypemRNA
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr01: 3683976 .. 3684574 (-)
Sequence length264
RNA-Seq ExpressionPI0006378.1
SyntenyPI0006378.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCAACCATACCTCCTCATCCTTGTCCAATGAAGTCTCTAGGTGCATGAAATATGTGGTAAAAATTCGTGCTTTACAGCCTTCATCTTCGAGCCATCAGTTGTTCAAATAGGGACAAGAACAATGGTGGTTTTGTTGAATGGTTGTTTGGAGCTAAAAGAATTGAATTGCCTAGCAGCAACAAATGCAGGATTCTCGCTGCATTTGCTGTGTTTAAGTTGTAAATAGAATGGGGTTTCAAATGGAAAGGAAGTGTAATTGAAAGAATTCACAGCTATTGTTCTTGCAAACTTAAAGTATGATTTATACGAATGAATTGTTTCAATGCAACATTATATATATATATTGATGTCTCATTGATAGTTTATTCAAGCTGATTTCTCTTGGAGCAAACTCAATCTTCCTTCCTGATATTGCCTTCTTCTAGCAGTTCGACGACCACGCCTAAATCCTCCCTGTTCATCCTCCTGCCTTACTATTTTGTTGTTGGTGCCAGTACTTCTCTTGCTGGATACAGTCCTCAAGCAATTGGATCTTATCAGTGATTTTCCACCTCTAATACTCTCATGTCTTCGTTTGCAATCTAGCTGTACATGA

mRNA sequence

ATGCTCAACCATACCTCCTCATCCTTGTCCAATGAAGTCTCTAGGTGCATGAAATATGTGGTAAAAATTCGTGCTTTACAGCCTTCATCTTCGACAGTTCGACGACCACGCCTAAATCCTCCCTGTTCATCCTCCTGCCTTACTATTTTGTTGTTGGTGCCAGTACTTCTCTTGCTGGATACAGTCCTCAAGCAATTGGATCTTATCAGTGATTTTCCACCTCTAATACTCTCATGTCTTCGTTTGCAATCTAGCTGTACATGA

Coding sequence (CDS)

ATGCTCAACCATACCTCCTCATCCTTGTCCAATGAAGTCTCTAGGTGCATGAAATATGTGGTAAAAATTCGTGCTTTACAGCCTTCATCTTCGACAGTTCGACGACCACGCCTAAATCCTCCCTGTTCATCCTCCTGCCTTACTATTTTGTTGTTGGTGCCAGTACTTCTCTTGCTGGATACAGTCCTCAAGCAATTGGATCTTATCAGTGATTTTCCACCTCTAATACTCTCATGTCTTCGTTTGCAATCTAGCTGTACATGA

Protein sequence

MLNHTSSSLSNEVSRCMKYVVKIRALQPSSSTVRRPRLNPPCSSSCLTILLLVPVLLLLDTVLKQLDLISDFPPLILSCLRLQSSCT
Homology
[Close]
BLAST of PI0006378.1 vs. ExPASy TrEMBL
Match: A0A0A0K3D1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039220 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.1e-19
Identity = 64/97 (65.98%), Postives = 66/97 (68.04%), Query Frame = 0 

Query: 10  SNEVSRCMKYVVKIRALQPSSS--------------------TVRRPRLNPPCSSSCLTI 69
           +NE SRC KY V+I ALQPSSS                     VRRPRLNPPCSSSCL I
Sbjct: 10  NNEFSRCFKYEVEILALQPSSSNEFEASVVQTRTRAMVVLLNAVRRPRLNPPCSSSCLAI 69

Query: 70  LLLVPVLLLLDTVLKQLDLISDFPPLILSCLRLQSSC 87
           LLLVPVL LLDTVLKQ  L S FPPLILSCLRLQSSC
Sbjct: 70  LLLVPVLPLLDTVLKQFVLFSAFPPLILSCLRLQSSC 106

The following BLAST results are available for this feature:
BLAST of PI0006378.1 vs.
Match NameE-valueIdentityDescription
BLAST of PI0006378.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3D11.1e-1965.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G039220 PE=4 SV=1[more]
BLAST of PI0006378.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
BLAST of PI0006378.1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
PI0006378PI0006378gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0006378.1-exonPI0006378.1-exon-chr01:3683976..3684145exon
PI0006378.1-exonPI0006378.1-exon-chr01:3684481..3684574exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
PI0006378.1-cdsPI0006378.1-cds-chr01:3683976..3684145CDS
PI0006378.1-cdsPI0006378.1-cds-chr01:3684481..3684574CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
PI0006378.1PI0006378.1-proteinpolypeptide