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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCCGATTACGAGTTTGTGGATGGGAACGAAGAATTTCTCGGAAAAATATCGGAAAATTTCGCTGAAATTTTGTTTCACGTGATATATTATGTGCAAAGGTACGCTTTTCCACGAGGAGATATATCATTGGTTAGACTGGAGGTTTAGTCATGCACATGGATTCTATTGGTCGCTGATTGCCTACCTAACTCCAATGGGTGTGAGTTGAAGCATGGGATTATTCCTCGTTCATACATTGAATTGCTAAAACAAAAACGTGGAAGTAAGAACGAAATTACCTTGGCTTTATCATGA mRNA sequence ATGGCCGATTACGAGTTTGTGGATGGGAACGAAGAATTTCTCGGAAAAATATCGGAAAATTTCGCTGAAATTTTGTTTCACTCATGCACATGGATTCTATTGGTCGCTGATTGCCTACCTAACTCCAATGGGTGTGAGTTGAAGCATGGGATTATTCCTCGTTCATACATTGAATTGCTAAAACAAAAACGTGGAAGTAAGAACGAAATTACCTTGGCTTTATCATGA Coding sequence (CDS) ATGGCCGATTACGAGTTTGTGGATGGGAACGAAGAATTTCTCGGAAAAATATCGGAAAATTTCGCTGAAATTTTGTTTCACTCATGCACATGGATTCTATTGGTCGCTGATTGCCTACCTAACTCCAATGGGTGTGAGTTGAAGCATGGGATTATTCCTCGTTCATACATTGAATTGCTAAAACAAAAACGTGGAAGTAAGAACGAAATTACCTTGGCTTTATCATGA Protein sequence MADYEFVDGNEEFLGKISENFAEILFHSCTWILLVADCLPNSNGCELKHGIIPRSYIELLKQKRGSKNEITLALS
Homology
BLAST of PI0005518.1 vs. ExPASy TrEMBL
Match: A0A0A0LF11 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G003620 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 3.8e-24 Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 0
Query: 1 MADYEFVDGNEEFLGKISENFAEILFHSCTWILLVADCLPNSNGCELKHGIIPRSYIELL 60
MA+ +FVDGNEEFLGKISE FAEILFH ILLVADCLPNSNGCELKHGIIPRSY++LL
Sbjct: 1 MAECKFVDGNEEFLGKISEIFAEILFH----ILLVADCLPNSNGCELKHGIIPRSYVQLL 60
Query: 61 KQKRGSKNEITLALS 76
QKRGS NEI A +
Sbjct: 61 NQKRGSDNEIVFAFA 71
BLAST of PI0005518.1 vs. NCBI nr
Match: KGN60610.1 (hypothetical protein Csa_019470 [Cucumis sativus]) HSP 1 Score: 120.2 bits (300), Expect = 7.8e-24 Identity = 59/75 (78.67%), Postives = 64/75 (85.33%), Query Frame = 0
Query: 1 MADYEFVDGNEEFLGKISENFAEILFHSCTWILLVADCLPNSNGCELKHGIIPRSYIELL 60
MA+ +FVDGNEEFLGKISE FAEILFH ILLVADCLPNSNGCELKHGIIPRSY++LL
Sbjct: 1 MAECKFVDGNEEFLGKISEIFAEILFH----ILLVADCLPNSNGCELKHGIIPRSYVQLL 60
Query: 61 KQKRGSKNEITLALS 76
QKRGS NEI A +
Sbjct: 61 NQKRGSDNEIVFAFA 71
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0LF11 | 3.8e-24 | 78.67 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G003620 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN60610.1 | 7.8e-24 | 78.67 | hypothetical protein Csa_019470 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
This mRNA is a part of the following gene feature(s):
| Feature Name | Unique Name | Type |
|---|
| PI0005518 | PI0005518 | gene |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0005518.1-exon | PI0005518.1-exon-chr05:743612..743692 | exon |
| PI0005518.1-exon | PI0005518.1-exon-chr05:743762..743908 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0005518.1-cds | PI0005518.1-cds-chr05:743612..743692 | CDS |
| PI0005518.1-cds | PI0005518.1-cds-chr05:743762..743908 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| PI0005518.1 | PI0005518.1-protein | polypeptide |
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