PI0004777.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0004777.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Replication protein A subunit
Location	chr02: 19309591 .. 19310229 (+)
Sequence length	378
RNA-Seq Expression	PI0004777.1
Synteny	PI0004777.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGAGGTAATCATTTAAATTTAATTGTTTATCACTTCCTTCTTAATTCTAATCTAATTGTTAATAATATTATTTATTAAGATTTAAATATAGTTTATTTTTTAAGCTCCTCACATTTATTATTTAAAATTATAATTATATAACAATTTACTTAATATACAAAATGTACTATTTTTTCTTTTTCAGGTAACAATTCAAATTAGTCTATACAATGACTTGATCAAAAAGTTCAATGATGTTATAGAGAAAGGAAAATATTATATCATTCGTAATGGAAAAATCAGTACTGTGAATCGTAGATATCTAAATGTTCATGATGAGATTGAAATTGCATTCACAACTAGTAGTAAAATTGAAGAGATCGATGATATGCATTTTTGTAATAAAGAGATTAATCATATTGATTTTTCATCCATCAAAAGCAATTTTGAACCTCAAGTTTTTGGTAAGTTTTTCTCTATATTATAAATATAAATAATTTAATTTCATTATAGTATTTCATTTGTCTAACTTATTATTTAAATAGATATTGTTGGAGTTGTAATAAGTGTAAAACTCATCACTCTTATCAAATCTCGAAATTCGAAAGAACGGTTTACTAAGAAACGTGATATATTCATTCTTGATAAAAGGTAA

mRNA sequence

ATGGATGAGGTAACAATTCAAATTAGTCTATACAATGACTTGATCAAAAAGTTCAATGATGTTATAGAGAAAGGAAAATATTATATCATTCGTAATGGAAAAATCAGTACTGTGAATCGTAGATATCTAAATGTTCATGATGAGATTGAAATTGCATTCACAACTAGTAGTAAAATTGAAGAGATCGATGATATGCATTTTTGTAATAAAGAGATTAATCATATTGATTTTTCATCCATCAAAAGCAATTTTGAACCTCAAGTTTTTGATATTGTTGGAGTTGTAATAAGTGTAAAACTCATCACTCTTATCAAATCTCGAAATTCGAAAGAACGGTTTACTAAGAAACGTGATATATTCATTCTTGATAAAAGGTAA

Coding sequence (CDS)

ATGGATGAGGTAACAATTCAAATTAGTCTATACAATGACTTGATCAAAAAGTTCAATGATGTTATAGAGAAAGGAAAATATTATATCATTCGTAATGGAAAAATCAGTACTGTGAATCGTAGATATCTAAATGTTCATGATGAGATTGAAATTGCATTCACAACTAGTAGTAAAATTGAAGAGATCGATGATATGCATTTTTGTAATAAAGAGATTAATCATATTGATTTTTCATCCATCAAAAGCAATTTTGAACCTCAAGTTTTTGATATTGTTGGAGTTGTAATAAGTGTAAAACTCATCACTCTTATCAAATCTCGAAATTCGAAAGAACGGTTTACTAAGAAACGTGATATATTCATTCTTGATAAAAGGTAA

Protein sequence

MDEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILDKR

Homology

[Close]

BLAST of PI0004777.1 vs. ExPASy Swiss-Prot
Match: Q6YZ49 (Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 35/121 (28.93%), Postives = 63/121 (52.07%), Query Frame = 0


Query: 6   IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDM 65
           I+++ +N L+ +F +V+E GK Y++  G +    + Y ++++E EI     S ++   D 
Sbjct: 261 IRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHLNNEWEILLENGSTVDLCPDE 320

Query: 66  HFCNKEINHIDFSSIKSNFEPQ---VFDIVGVVISVKLITLIKSRNSKERFTKKRDIFIL 124
           +  +      DF  I    + Q   + DI+GVV SV   T I+ +N  E  T+KR + + 
Sbjct: 321 N-SSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQRKNGME--TQKRTMNLK 378

[Close]

BLAST of PI0004777.1 vs. ExPASy Swiss-Prot
Match: Q10Q08 (Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japonica OX=39947 GN=RPA1B PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.5e-06
Identity = 38/129 (29.46%), Postives = 63/129 (48.84%), Query Frame = 0


Query: 1   MDEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE 60
           +D   IQ +++N+  KKF  + E GK Y I  G +   N+++  VH++ E+    ++ +E
Sbjct: 231 VDGTQIQATMFNEAAKKFYPMFELGKVYYISKGSLRVANKQFKTVHNDYEMTLNENAVVE 290

Query: 61  EIDDMHFCNKEINHIDFSSIK-SNFEP-----QVFDIVGVVISVKLITLIKSRNSKERFT 120
           E +   F    I  I ++ +K     P     ++ D++GVV SV   TL   R       
Sbjct: 291 EAEGETF----IPQIQYNFVKIDQLGPYVGGRELVDVIGVVQSVS-PTLSVRRKIDNETI 350

Query: 121 KKRDIFILD 124
            KRDI + D
Sbjct: 351 PKRDIVVAD 354

[Close]

BLAST of PI0004777.1 vs. ExPASy Swiss-Prot
Match: Q23696 (Replication factor A 51 kDa subunit OS=Crithidia fasciculata OX=5656 GN=RPA1 PE=1 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 4.8e-05
Identity = 25/119 (21.01%), Postives = 58/119 (48.74%), Query Frame = 0


Query: 2   DEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKI-- 61
           +   I+ +++ND +  F  ++  G+ Y    G++   NRR+ NV+++ E+ F  +S++  
Sbjct: 55  ESAAIRATVFNDAVDTFEPLVVNGQVYYFSGGQVKNANRRFSNVNNDYELTFDRASEVIL 114

Query: 62  --EEIDDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKK 117
             ++        +  N +    +K      + D++GVV+ V  I+ I  +++     K+
Sbjct: 115 ARQDSSAAALPMQRYNFVPIELLKQREVGSLVDVLGVVLKVDEISSITQKSTGRELIKR 173

[Close]

BLAST of PI0004777.1 vs. ExPASy Swiss-Prot
Match: Q9SKI4 (Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA1A PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 1.4e-04
Identity = 32/121 (26.45%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 6   IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EID 65
           I+++ +N L+ +F DV E GK Y+I  G +    + + ++ +E EI   ++S +E    +
Sbjct: 247 IRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDE 306

Query: 66  DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILD 125
           D     ++ +    S I++     + D++GVV SV     I  +N  E  T +R + + D
Sbjct: 307 DGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGME--THRRILNLKD 365

[Close]

BLAST of PI0004777.1 vs. ExPASy Swiss-Prot
Match: P22336 (Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RFA1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.8e-04
Identity = 29/119 (24.37%), Postives = 59/119 (49.58%), Query Frame = 0


Query: 6   IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEE-IDD 65
           I+ + +ND   KFN+++++GK Y +   K+     ++ N+    E+     + IEE  D+
Sbjct: 233 IRATAFNDFATKFNEILQEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECFDE 292

Query: 66  MHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILD 124
            +      N I   +I++       D++G++ ++     + SR  K+    +RDI I+D
Sbjct: 293 SNVPKTHFNFIKLDAIQNQEVNSNVDVLGIIQTINPHFELTSRAGKK--FDRRDITIVD 349

[Close]

BLAST of PI0004777.1 vs. ExPASy TrEMBL
Match: A0A6J1DNS8 (replication protein A 70 kDa DNA-binding subunit E-like OS=Momordica charantia OX=3673 GN=LOC111022373 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 8.2e-16
Identity = 48/123 (39.02%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 4   VTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEID 63
           V IQ++L+NDLI+KF D++EKGK Y I +G I  ++ RY+NVH +IEI+ + +SK++EI+
Sbjct: 51  VCIQVNLFNDLIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVHSKIEISLSQNSKVKEIE 110

Query: 64  -DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFIL 123
            +  F  K+    DF + +S  + Q  D++G V+ +K I   K+R+    ++KKR++ ++
Sbjct: 111 GETFFLTKQ----DFCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDG--NYSKKREVLLM 167

Query: 124 DKR 126
           D +
Sbjct: 171 DNK 167

[Close]

BLAST of PI0004777.1 vs. ExPASy TrEMBL
Match: D5GBQ9 (Replication protein A subunit OS=Tuber melanosporum (strain Mel28) OX=656061 GN=GSTUM_00005528001 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 33/116 (28.45%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 11  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FC 70
           +ND +  F +V+++G+ Y I N K++   +++ N++++ E+AF  +++IE+ +D+     
Sbjct: 238 FNDQVDSFYEVLQEGQVYYISNCKVNFAKKQFSNINNDYELAFERNTEIEKCNDVDDGIP 297

Query: 71  NKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILDK 125
               N + FS ++S     + D++GV+  V  +  I+S+N+++ +T KRD+ ++DK
Sbjct: 298 MARFNFVQFSELESIQNDGIIDVIGVIKEVGEVASIQSKNTQKSYT-KRDVTLVDK 352

[Close]

BLAST of PI0004777.1 vs. ExPASy TrEMBL
Match: A0A292PY57 (Replication protein A subunit OS=Tuber aestivum OX=59557 GN=GSTUAT00004262001 PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 3.1e-07
Identity = 35/125 (28.00%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 6   IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEI--- 65
           I+ + +ND +  F +++++G+ Y I N K++   ++Y N+++E E+AF   ++IE++   
Sbjct: 307 IRATGFNDQVDSFYEMLQEGQIYYISNCKVNLAKKQYSNINNEYELAFERITEIEKVASD 366

Query: 66  ---DDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDI 125
               D        N I FS ++      + DI+GV+  V  +  + S+N+++ +T KRD+
Sbjct: 367 CNDADDGLPRARFNFIQFSELEGIQNDGIIDIIGVIKEVDDVATLLSKNTQKSYT-KRDV 426

[Close]

BLAST of PI0004777.1 vs. ExPASy TrEMBL
Match: A0A317SQL3 (Replication protein A subunit OS=Tuber magnatum OX=42249 GN=C7212DRAFT_321612 PE=3 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.6e-06
Identity = 31/121 (25.62%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 6   IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDM 65
           I+ + +ND +  F +V+ +G+ Y I N K++   +++ N++++ E+AF  +++IE+ +D 
Sbjct: 233 IRATGFNDQVDSFYEVLHEGQIYYISNCKVNFAKKQFSNINNDYELAFERNTEIEKCNDS 292

Query: 66  H--FCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILD 125
                    N + FS ++      + D++GV+  V  +  ++S+++ + +T KRD+ ++D
Sbjct: 293 DDGLPKARFNFVQFSELEGIQNDGIIDVIGVIKEVGEVAGLQSKSTNKSYT-KRDVTLVD 352

[Close]

BLAST of PI0004777.1 vs. ExPASy TrEMBL
Match: A0A132AJ24 (Replication protein A subunit OS=Sarcoptes scabiei OX=52283 GN=QR98_0093820 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 36/125 (28.80%), Postives = 71/125 (56.80%), Query Frame = 0


Query: 2   DEVTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEE 61
           D   I+++ +ND + +F D+I+K K + +  G + T N+++ +++++ EI    SS I+ 
Sbjct: 218 DSGEIRVTCFNDEVDRFYDLIQKDKVFFVGKGSVKTANKKFSSINNDYEITLNQSSFIKL 277

Query: 62  IDDMHFCNKEINH--IDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDI 121
            +D      ++ +  I+ S+I +  +  V D++GV+ S   I  I S+ S +    KR+I
Sbjct: 278 CNDAQIEAPKLKYKFINLSNIMNMAQGTVIDVIGVIRSASEIESIISKKSAKEL-HKREI 337

Query: 122 FILDK 125
            I+DK
Sbjct: 338 VIVDK 341

[Close]

BLAST of PI0004777.1 vs. NCBI nr
Match: XP_022155232.1 (replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia])

HSP 1 Score: 93.2 bits (230), Expect = 1.7e-15
Identity = 48/123 (39.02%), Postives = 83/123 (67.48%), Query Frame = 0


Query: 4   VTIQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEID 63
           V IQ++L+NDLI+KF D++EKGK Y I +G I  ++ RY+NVH +IEI+ + +SK++EI+
Sbjct: 51  VCIQVNLFNDLIEKFGDMLEKGKTYAINDGNIKPIDVRYMNVHSKIEISLSQNSKVKEIE 110

Query: 64  -DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFIL 123
            +  F  K+    DF + +S  + Q  D++G V+ +K I   K+R+    ++KKR++ ++
Sbjct: 111 GETFFLTKQ----DFCNFESVLDYQSIDVIGGVVQIKPIIFRKTRDG--NYSKKREVLLM 167

Query: 124 DKR 126
           D +
Sbjct: 171 DNK 167

[Close]

BLAST of PI0004777.1 vs. NCBI nr
Match: CAA2985982.1 (Hypothetical predicted protein [Olea europaea subsp. europaea])

HSP 1 Score: 89.4 bits (220), Expect = 2.5e-14
Identity = 53/117 (45.30%), Postives = 76/117 (64.96%), Query Frame = 0


Query: 10  LYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMHFCN 69
           L+ND I+KF+ +IEKGK YIIRNG    VN +Y NV+DEIE++FTT+ ++EEI +   C 
Sbjct: 2   LFNDAIQKFDAIIEKGKSYIIRNGSARPVNGKYRNVNDEIELSFTTTMEVEEIKE-RICY 61

Query: 70  KEIN-HIDFSSIKSNFE--PQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILD 124
           K  N  + F+ +  NF     V DI+G+V+ VK   +I  +   ER  KKR++ +LD
Sbjct: 62  KISNSFLQFNEV-PNFANGDIVIDIIGLVVKVKPAFIINVKRPSERTMKKREVTLLD 116

[Close]

BLAST of PI0004777.1 vs. NCBI nr
Match: KAG0129521.1 (hypothetical protein HOY82DRAFT_505689 [Tuber indicum])

HSP 1 Score: 70.9 bits (172), Expect = 9.1e-09
Identity = 35/116 (30.17%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 11  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FC 70
           +ND +  F +V+++G+ Y I N K++   ++Y N++++ E+AF  S++IE+ +D+     
Sbjct: 238 FNDQVDSFYEVLQEGQVYYISNCKVNFAKKQYSNINNDYELAFERSTEIEKCNDVDDGLP 297

Query: 71  NKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILDK 125
               N + FS ++S     + D++GV+  V  +  I+S+N+++ +T KRD+ ++DK
Sbjct: 298 MARFNFVQFSELESIQNDGIIDVIGVIKEVGEVASIQSKNTQKSYT-KRDVTLVDK 352

[Close]

BLAST of PI0004777.1 vs. NCBI nr
Match: XP_002837718.1 (hypothetical protein [Tuber melanosporum Mel28] >CAZ81909.1 unnamed protein product [Tuber melanosporum])

HSP 1 Score: 68.2 bits (165), Expect = 5.9e-08
Identity = 33/116 (28.45%), Postives = 73/116 (62.93%), Query Frame = 0


Query: 11  YNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEIDDMH--FC 70
           +ND +  F +V+++G+ Y I N K++   +++ N++++ E+AF  +++IE+ +D+     
Sbjct: 238 FNDQVDSFYEVLQEGQVYYISNCKVNFAKKQFSNINNDYELAFERNTEIEKCNDVDDGIP 297

Query: 71  NKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILDK 125
               N + FS ++S     + D++GV+  V  +  I+S+N+++ +T KRD+ ++DK
Sbjct: 298 MARFNFVQFSELESIQNDGIIDVIGVIKEVGEVASIQSKNTQKSYT-KRDVTLVDK 352

[Close]

BLAST of PI0004777.1 vs. NCBI nr
Match: CUS11635.1 (unnamed protein product [Tuber aestivum])

HSP 1 Score: 64.7 bits (156), Expect = 6.5e-07
Identity = 35/125 (28.00%), Postives = 72/125 (57.60%), Query Frame = 0


Query: 6   IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIEEI--- 65
           I+ + +ND +  F +++++G+ Y I N K++   ++Y N+++E E+AF   ++IE++   
Sbjct: 307 IRATGFNDQVDSFYEMLQEGQIYYISNCKVNLAKKQYSNINNEYELAFERITEIEKVASD 366

Query: 66  ---DDMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDI 125
               D        N I FS ++      + DI+GV+  V  +  + S+N+++ +T KRD+
Sbjct: 367 CNDADDGLPRARFNFIQFSELEGIQNDGIIDIIGVIKEVDDVATLLSKNTQKSYT-KRDV 426

[Close]

BLAST of PI0004777.1 vs. TAIR 10
Match: AT2G06510.2 (replication protein A 1A )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 32/121 (26.45%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 6   IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EID 65
           I+++ +N L+ +F DV E GK Y+I  G +    + + ++ +E EI   ++S +E    +
Sbjct: 224 IRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDE 283

Query: 66  DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILD 125
           D     ++ +    S I++     + D++GVV SV     I  +N  E  T +R + + D
Sbjct: 284 DGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGME--THRRILNLKD 342

[Close]

BLAST of PI0004777.1 vs. TAIR 10
Match: AT2G06510.1 (replication protein A 1A )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 32/121 (26.45%), Postives = 62/121 (51.24%), Query Frame = 0


Query: 6   IQISLYNDLIKKFNDVIEKGKYYIIRNGKISTVNRRYLNVHDEIEIAFTTSSKIE--EID 65
           I+++ +N L+ +F DV E GK Y+I  G +    + + ++ +E EI   ++S +E    +
Sbjct: 247 IRVTCFNALVDRFYDVTEVGKVYLISKGSLKPAQKNFNHLKNEWEIFLESTSTVELCPDE 306

Query: 66  DMHFCNKEINHIDFSSIKSNFEPQVFDIVGVVISVKLITLIKSRNSKERFTKKRDIFILD 125
           D     ++ +    S I++     + D++GVV SV     I  +N  E  T +R + + D
Sbjct: 307 DGSIPKQQFSFRPISDIENAENNTILDVIGVVTSVNPSVPILRKNGME--THRRILNLKD 365

The following BLAST results are available for this feature:

BLAST of PI0004777.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6YZ49	1.5e-06	28.93	Replication protein A 70 kDa DNA-binding subunit A OS=Oryza sativa subsp. japoni...	[more]
Q10Q08	1.5e-06	29.46	Replication protein A 70 kDa DNA-binding subunit B OS=Oryza sativa subsp. japoni...	[more]
Q23696	4.8e-05	21.01	Replication factor A 51 kDa subunit OS=Crithidia fasciculata OX=5656 GN=RPA1 PE=...	[more]
Q9SKI4	1.4e-04	26.45	Replication protein A 70 kDa DNA-binding subunit A OS=Arabidopsis thaliana OX=37...	[more]
P22336	1.8e-04	24.37	Replication factor A protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /...	[more]

BLAST of PI0004777.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNS8	8.2e-16	39.02	replication protein A 70 kDa DNA-binding subunit E-like OS=Momordica charantia O...	[more]
D5GBQ9	2.8e-08	28.45	Replication protein A subunit OS=Tuber melanosporum (strain Mel28) OX=656061 GN=...	[more]
A0A292PY57	3.1e-07	28.00	Replication protein A subunit OS=Tuber aestivum OX=59557 GN=GSTUAT00004262001 PE...	[more]
A0A317SQL3	1.6e-06	25.62	Replication protein A subunit OS=Tuber magnatum OX=42249 GN=C7212DRAFT_321612 PE...	[more]
A0A132AJ24	2.0e-06	28.80	Replication protein A subunit OS=Sarcoptes scabiei OX=52283 GN=QR98_0093820 PE=3...	[more]

BLAST of PI0004777.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155232.1	1.7e-15	39.02	replication protein A 70 kDa DNA-binding subunit E-like [Momordica charantia]	[more]
CAA2985982.1	2.5e-14	45.30	Hypothetical predicted protein [Olea europaea subsp. europaea]	[more]
KAG0129521.1	9.1e-09	30.17	hypothetical protein HOY82DRAFT_505689 [Tuber indicum]	[more]
XP_002837718.1	5.9e-08	28.45	hypothetical protein [Tuber melanosporum Mel28] >CAZ81909.1 unnamed protein prod...	[more]
CUS11635.1	6.5e-07	28.00	unnamed protein product [Tuber aestivum]	[more]

BLAST of PI0004777.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G06510.2	1.0e-05	26.45	replication protein A 1A	[more]
AT2G06510.1	1.0e-05	26.45	replication protein A 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.140		coord: 2..65 e-value: 2.2E-13 score: 52.3
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 5..123
None	No IPR available	PANTHER	PTHR23273:SF47	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A	coord: 5..123
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 5..66

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0004777	PI0004777	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0004777.1-exon	PI0004777.1-exon-chr02:19309591..19309599	exon
PI0004777.1-exon	PI0004777.1-exon-chr02:19309780..19310038	exon
PI0004777.1-exon	PI0004777.1-exon-chr02:19310120..19310229	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0004777.1-cds	PI0004777.1-cds-chr02:19309591..19309599	CDS
PI0004777.1-cds	PI0004777.1-cds-chr02:19309780..19310038	CDS
PI0004777.1-cds	PI0004777.1-cds-chr02:19310120..19310229	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0004777.1	PI0004777.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005694	chromosome
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0003677	DNA binding