PI0000937.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0000937.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr12: 16756917 .. 16757114 (-)
Sequence length	198
RNA-Seq Expression	PI0000937.1
Synteny	PI0000937.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATGTAACGGGTGAGGCTGCCATGGCAGAGATGGAGAGGAAAATCAATCTCCTGATGAAAGCTGTCGAGGAGCGAGACCACGAAATTGCAGTTTTGAGAGAGCAAATGCAGACTTGTGAAACTGCTGAGTCGAGTCAAACTCCTGTTGTCAAAGTCGATGACAAATGGAAGAATGTGGTGCAAGAAAACTAA

mRNA sequence

ATGGCTGATGTAACGGGTGAGGCTGCCATGGCAGAGATGGAGAGGAAAATCAATCTCCTGATGAAAGCTGTCGAGGAGCGAGACCACGAAATTGCAGTTTTGAGAGAGCAAATGCAGACTTGTGAAACTGCTGAGTCGAGTCAAACTCCTGTTGTCAAAGTCGATGACAAATGGAAGAATGTGGTGCAAGAAAACTAA

Coding sequence (CDS)

ATGGCTGATGTAACGGGTGAGGCTGCCATGGCAGAGATGGAGAGGAAAATCAATCTCCTGATGAAAGCTGTCGAGGAGCGAGACCACGAAATTGCAGTTTTGAGAGAGCAAATGCAGACTTGTGAAACTGCTGAGTCGAGTCAAACTCCTGTTGTCAAAGTCGATGACAAATGGAAGAATGTGGTGCAAGAAAACTAA

Protein sequence

MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKNVVQEN

Homology

[Close]

BLAST of PI0000937.1 vs. ExPASy TrEMBL
Match: A0A5A7V6X2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold258G00040 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 53/65 (81.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           M DVT EA MAEMERKIN LMK VEERDHEIAVL++QM+ CETAESSQTPVVK  DK KN
Sbjct: 57  MIDVTAEATMAEMERKINFLMKVVEERDHEIAVLKDQMKACETAESSQTPVVKATDKEKN 116

Query: 61  VVQEN 66
           VVQEN
Sbjct: 117 VVQEN 121

[Close]

BLAST of PI0000937.1 vs. ExPASy TrEMBL
Match: A0A5A7TYE9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00410 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 54/65 (83.08%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MAD+T EAAMAEMERKIN LMK VEERDHEI  LREQM+T ETAESSQTPVVK  DK KN
Sbjct: 63  MADITAEAAMAEMERKINFLMKVVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 122

Query: 61  VVQEN 66
           VVQEN
Sbjct: 123 VVQEN 127

[Close]

BLAST of PI0000937.1 vs. ExPASy TrEMBL
Match: A0A5A7VDN4 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold381G00050 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MAD+T EAAMAEMERKIN LMKAVEERDHEI  LREQM+T ETAESSQTPVVK  DK KN
Sbjct: 39  MADITAEAAMAEMERKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 98

Query: 61  VVQEN 66
           VVQ+N
Sbjct: 99  VVQKN 103

[Close]

BLAST of PI0000937.1 vs. ExPASy TrEMBL
Match: A0A5D3BY54 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001700 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.7e-18
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MAD+T EAAMAEMERKIN LMKAVEERDHEI  LREQM+T ETAESSQTP+VK  DK KN
Sbjct: 86  MADITPEAAMAEMERKINFLMKAVEERDHEIIALREQMRTRETAESSQTPIVKATDKGKN 145

Query: 61  VVQEN 66
           VVQEN
Sbjct: 146 VVQEN 150

[Close]

BLAST of PI0000937.1 vs. ExPASy TrEMBL
Match: A0A5A7UF60 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22G00260 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 4.6e-18
Identity = 54/65 (83.08%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MAD+T EAAMAEME+KIN LMKAVEERDHEI  LREQM+T ETAESSQTPVVK  DK KN
Sbjct: 86  MADITVEAAMAEMEKKINFLMKAVEERDHEITALREQMRTRETAESSQTPVVKATDKGKN 145

Query: 61  VVQEN 66
           VVQEN
Sbjct: 146 VVQEN 150

[Close]

BLAST of PI0000937.1 vs. NCBI nr
Match: XP_031739134.1 (uncharacterized protein LOC116402863 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MADV  E AMAEMERKINLLMK V+ERDHEIA L+EQMQT ETAESSQTPVVKVDDK KN
Sbjct: 86  MADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKN 145

Query: 61  VVQEN 66
           VVQEN
Sbjct: 146 VVQEN 150

[Close]

BLAST of PI0000937.1 vs. NCBI nr
Match: XP_031742032.1 (uncharacterized protein LOC116404025 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MADV  E AMAEMERKINLLMK V+ERDHEIA L+EQMQT ETAESSQTPVVKVDDK KN
Sbjct: 86  MADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKN 145

Query: 61  VVQEN 66
           VVQEN
Sbjct: 146 VVQEN 150

[Close]

BLAST of PI0000937.1 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MADV  E AMAEMERKINLLMK V+ERDHEIA L+EQMQT ETAESSQTPVVKVDDK KN
Sbjct: 86  MADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKN 145

Query: 61  VVQEN 66
           VVQEN
Sbjct: 146 VVQEN 150

[Close]

BLAST of PI0000937.1 vs. NCBI nr
Match: XP_031735972.1 (uncharacterized protein LOC116401693 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MADV  E AMAEMERKINLLMK V+ERDHEIA L+EQMQT ETAESSQTPVVKVDDK KN
Sbjct: 86  MADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKN 145

Query: 61  VVQEN 66
           VVQEN
Sbjct: 146 VVQEN 150

[Close]

BLAST of PI0000937.1 vs. NCBI nr
Match: XP_031737053.1 (uncharacterized protein LOC116402138 [Cucumis sativus])

HSP 1 Score: 102.8 bits (255), Expect = 1.1e-18
Identity = 56/65 (86.15%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 1   MADVTGEAAMAEMERKINLLMKAVEERDHEIAVLREQMQTCETAESSQTPVVKVDDKWKN 60
           MADV  E AMAEMERKINLLMK V+ERDHEIA L+EQMQT ETAESSQTPVVKVDDK KN
Sbjct: 86  MADVAVETAMAEMERKINLLMKVVDERDHEIAALKEQMQTRETAESSQTPVVKVDDKGKN 145

Query: 61  VVQEN 66
           VVQEN
Sbjct: 146 VVQEN 150

The following BLAST results are available for this feature:

BLAST of PI0000937.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000937.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6X2	2.7e-18	81.54	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TYE9	2.7e-18	83.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7VDN4	2.7e-18	83.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3BY54	2.7e-18	83.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UF60	4.6e-18	83.08	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of PI0000937.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739134.1	1.1e-18	86.15	uncharacterized protein LOC116402863 [Cucumis sativus]	[more]
XP_031742032.1	1.1e-18	86.15	uncharacterized protein LOC116404025 [Cucumis sativus]	[more]
XP_031742199.1	1.1e-18	86.15	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]
XP_031735972.1	1.1e-18	86.15	uncharacterized protein LOC116401693 [Cucumis sativus]	[more]
XP_031737053.1	1.1e-18	86.15	uncharacterized protein LOC116402138 [Cucumis sativus]	[more]

BLAST of PI0000937.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 10..30

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0000937	PI0000937	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000937.1-exon	PI0000937.1-exon-chr12:16756917..16757114	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000937.1-cds	PI0000937.1-cds-chr12:16756917..16757114	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0000937.1	PI0000937.1-protein	polypeptide