PI0000166.1 (mRNA) Melon (PI 482460) v1

Overview


Name	PI0000166.1
Type	mRNA
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr06: 7018603 .. 7019772 (-)
Sequence length	720
RNA-Seq Expression	PI0000166.1
Synteny	PI0000166.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTACAGCGAAACAGACGGGTAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGTTAGAATTTCCAGACACCGTCCGCTTCTTGGAAAGTCGGATTGAAGAAGTTTCTGAGAAAGCTGACGCTATTGATGCGGTGACCGGTTGCCTCGACGGTTTACCTATAAAAGAGTTGTTAATAAGAGTTGACACTTTAGAGGCAAAGACTACGAGAATAAACTACGAGCGTGGGAGCAGCTCGTCGAGCCCTGCTGCCCACGTAAAGGAACAGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTCGAGATGATAAACGACATGTCAGAGGATTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTGGAGGAGCTATACAAGTCAATAAGGTGAAAATCCCCGAACCCAAACCCTTTTGTGGGGTGAGGGACGCAAAAGCCTTGGAGAACTTCATATTTGACCTAGAACAGTACTTCTGGGCCACAAACATTGTCGCGAAAGAAGCGAAAGTGACATTAGCAACGATGCACCTAGCTGAGGATGCAAAGTTGTGGTGGAGGTCCCAGTATGTCGAGATCTAAGAGGGACGATGTACGGTAGACACCTGGGACAGTTTAAAGAAGGAACTACGCTCACAGTTCTTCCCCGAGAATGTTGAAATCCTTGCTCGACGGAAGTTGCGTGAACTAAAACACACCGGTAGCGTTCGGGAGTATGTGAAGCAGTTTGCGGGACTGATGTTAGACATACGCGATATGTCCGAGAAAGACAAAATTTTCTATTTTGTCGAAGGTCTTAAACCGTGGGCGAAGACCAAGTTGTATGAACAGGGGGTCCAAGAATTCTCGTCGGCGTACGCAGCGGCGGAGCGACTGTTTGATCTGTCCCCTGACTCTCAAGATGAGAGTCGTCCTCCAAGTCCCTCACCTGAAAGAGACGAGGATGATTGTGTAAGTTCTCCGAAGGCCGAAGGGGAGATAAACGATCTGGTGGTGGTCGTAGGCTCTTCCAATCAAACCCCGGGAGCCCGGGCGAAGACAGAACCACCAGAAACCTCGCAGTCGTCCCCCTGCCTGTTTCATATGTAA

mRNA sequence

ATGTCTACAGCGAAACAGACGGGTAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGTTAGAATTTCCAGACACCGTCCGCTTCTTGGAAAGTCGGATTGAAGAAGTTTCTGAGAAAGCTGACGCTATTGATGCGGTGACCGGTTGCCTCGACGGTTTACCTATAAAAGAGTTGTTAATAAGAGTTGACACTTTAGAGGCAAAGACTACGAGAATAAACTACGAGCGTGGGAGCAGCTCGTCGAGCCCTGCTGCCCACGTAAAGGAACAGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTCGAGATGATAAACGACATGTCAGAGGATTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTGGAGGAGCTATACAAGGGGTCCAAGAATTCTCGTCGGCGTACGCAGCGGCGGAGCGACTGTTTGATCTGTCCCCTGACTCTCAAGATGAGAGTCGTCCTCCAAGTCCCTCACCTGAAAGAGACGAGGATGATTGTGTAAGTTCTCCGAAGGCCGAAGGGGAGATAAACGATCTGGTGGTGGTCGTAGGCTCTTCCAATCAAACCCCGGGAGCCCGGGCGAAGACAGAACCACCAGAAACCTCGCAGTCGTCCCCCTGCCTGTTTCATATGTAA

Coding sequence (CDS)

ATGTCTACAGCGAAACAGACGGGTAAGGCCCACGCAGACCGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTGTTAGAATTTCCAGACACCGTCCGCTTCTTGGAAAGTCGGATTGAAGAAGTTTCTGAGAAAGCTGACGCTATTGATGCGGTGACCGGTTGCCTCGACGGTTTACCTATAAAAGAGTTGTTAATAAGAGTTGACACTTTAGAGGCAAAGACTACGAGAATAAACTACGAGCGTGGGAGCAGCTCGTCGAGCCCTGCTGCCCACGTAAAGGAACAGATTGGCGAGCTAGATAGCTCCCAAAAGTCGATTGTCGAGATGATAAACGACATGTCAGAGGATTTTCGTGCCGCTCTTGATGTCGTCAGGAATGAGATCGCAGACGTGAGCGCGAGGGTGAACCTCACGATGCGAGCCATGGCAAACCAAGCTCCAACTGGAGGAGCTATACAAGGGGTCCAAGAATTCTCGTCGGCGTACGCAGCGGCGGAGCGACTGTTTGATCTGTCCCCTGACTCTCAAGATGAGAGTCGTCCTCCAAGTCCCTCACCTGAAAGAGACGAGGATGATTGTGTAAGTTCTCCGAAGGCCGAAGGGGAGATAAACGATCTGGTGGTGGTCGTAGGCTCTTCCAATCAAACCCCGGGAGCCCGGGCGAAGACAGAACCACCAGAAACCTCGCAGTCGTCCCCCTGCCTGTTTCATATGTAA

Protein sequence

MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLPIKELLIRVDTLEAKTTRINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSEDFRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEGEINDLVVVVGSSNQTPGARAKTEPPETSQSSPCLFHM

Homology

[Close]

BLAST of PI0000166.1 vs. ExPASy TrEMBL
Match: A0A5D3BQN3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001060 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 2.2e-49
Identity = 107/156 (68.59%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR+EE+SEKAD IDAV G ++GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVEEISEKADTIDAVAGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           I+ELL RVD LE  T     INYERG SSS  AAH++E++GELD++QK+++EMIN MSED
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVGELDNAQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI 154
           FR  LDVVRNEIADV+AR++LTMRAMA+QAP GGAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMASQAPAGGAI 156

[Close]

BLAST of PI0000166.1 vs. ExPASy TrEMBL
Match: A0A5D3BQN3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001060 PE=4 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.8e-01
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 154 QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPK 200
           Q VQ+ +SAYAAAERLFDL+ D+QD  R  S SP R+ +   SSPK
Sbjct: 307 QRVQDLTSAYAAAERLFDLTGDTQDVRRHKSSSPGRNRNSRPSSPK 352

HSP 2 Score: 204.9 bits (520), Expect = 3.7e-49
Identity = 107/156 (68.59%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           M ++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEK D IDAV G ++GLP
Sbjct: 1   MLSSNPSGKAQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKTDMIDAVAGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           I+ELL RVD LE  T     +NYERG SSS  AAH+KE++ ELDSSQK+++EMIN MSED
Sbjct: 61  IQELLARVDALEENTNARRTVNYERGDSSSGFAAHMKERVSELDSSQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI 154
           FR  LDVVRNEIADV+AR+NLTMRAMANQAP GGAI
Sbjct: 121 FRVTLDVVRNEIADVNARLNLTMRAMANQAPAGGAI 156

[Close]

BLAST of PI0000166.1 vs. ExPASy TrEMBL
Match: A0A5A7VFV0 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00330 PE=4 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.1e-03
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 154 QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEGE 204
           Q VQ+ +SAYAAAERLFDL+ DSQD  R  S SP R+ +   SSPKA GE
Sbjct: 307 QRVQDLTSAYAAAERLFDLTSDSQDVRRHQSSSPRRNRNSRPSSPKAVGE 356

HSP 2 Score: 204.5 bits (519), Expect = 4.9e-49
Identity = 125/242 (51.65%), Postives = 153/242 (63.22%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           MS+A   GKA  DRL E+EEQMLYL E PD++R+LES  EE+SEKA  IDAV G ++GLP
Sbjct: 1   MSSADSLGKAQRDRLAELEEQMLYLAEVPDSIRYLESHFEEISEKASTIDAVVGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           I+ELL+RVDTLE  T     INYER  SSS  AAH++E + ELDSSQK+++EMINDMSED
Sbjct: 61  IQELLVRVDTLETNTNVRRTINYERVDSSSGFAAHMEEHVSELDSSQKTLLEMINDMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQ----------------------- 180
           FRA LDVVRNEIADV+AR++LT+  +  + P  G  +                       
Sbjct: 121 FRATLDVVRNEIADVNARLSLTICQVVVEVPIHGHTERALHNRYLGRPDERTPLAILLQE 180

Query: 181 --------------GVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKA 203
                          VQ  +SAYAA ERLFDL+ DSQD  R  S SP R+ +  +SSPKA
Sbjct: 181 CGNPCSAKAKFDEHRVQHLTSAYAATERLFDLTSDSQDVRRHQSSSPGRNRNSRLSSPKA 240

[Close]

BLAST of PI0000166.1 vs. ExPASy TrEMBL
Match: A0A5D3CCE2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00740 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 6.3e-49
Identity = 106/156 (67.95%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEKA+ IDAV G ++GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           IKELL RVD LE  T     INYERG SSS   AH++E++GELD++QK+++EMIN MSED
Sbjct: 61  IKELLARVDALEENTNARRTINYERGESSSGFGAHMEERVGELDNAQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI 154
           FR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156

[Close]

BLAST of PI0000166.1 vs. ExPASy TrEMBL
Match: A0A5D3CCE2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold204G00740 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-03
Identity = 31/49 (63.27%), Postives = 35/49 (71.43%), Query Frame = 0


Query: 154 QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEG 203
           Q VQ+ +SAYAAAERLFDL+ DSQD  R  S SP R+ D   SSPKA G
Sbjct: 307 QRVQDLTSAYAAAERLFDLTSDSQDARRNQSSSPRRNRDSRPSSPKAVG 355

HSP 2 Score: 204.1 bits (518), Expect = 6.3e-49
Identity = 106/156 (67.95%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEKA+ IDAV G ++GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           IKELL RVD LE  T     INYERG SSS   AH++E++GELD++QK+++EMIN MSED
Sbjct: 61  IKELLARVDALEENTNARRTINYERGESSSGFGAHMEERVGELDNAQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI 154
           FR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156

[Close]

BLAST of PI0000166.1 vs. NCBI nr
Match: KAA0037518.1 (uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK01993.1 uncharacterized protein E5676_scaffold808G001060 [Cucumis melo var. makuwa])

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-49
Identity = 107/156 (68.59%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR+EE+SEKAD IDAV G ++GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVEEISEKADTIDAVAGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           I+ELL RVD LE  T     INYERG SSS  AAH++E++GELD++QK+++EMIN MSED
Sbjct: 61  IQELLARVDALEENTNARRTINYERGESSSGFAAHMEERVGELDNAQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI 154
           FR  LDVVRNEIADV+AR++LTMRAMA+QAP GGAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMASQAPAGGAI 156

[Close]

BLAST of PI0000166.1 vs. NCBI nr
Match: KAA0037518.1 (uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK01993.1 uncharacterized protein E5676_scaffold808G001060 [Cucumis melo var. makuwa])

HSP 1 Score: 45.4 bits (106), Expect = 7.8e-01
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 0


Query: 154 QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPK 200
           Q VQ+ +SAYAAAERLFDL+ D+QD  R  S SP R+ +   SSPK
Sbjct: 307 QRVQDLTSAYAAAERLFDLTGDTQDVRRHKSSSPGRNRNSRPSSPK 352

HSP 2 Score: 204.9 bits (520), Expect = 7.7e-49
Identity = 107/156 (68.59%), Postives = 129/156 (82.69%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           M ++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEK D IDAV G ++GLP
Sbjct: 1   MLSSNPSGKAQKDRLVEIEEQMLYLVEVPDSIRYLESRLDEISEKTDMIDAVAGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           I+ELL RVD LE  T     +NYERG SSS  AAH+KE++ ELDSSQK+++EMIN MSED
Sbjct: 61  IQELLARVDALEENTNARRTVNYERGDSSSGFAAHMKERVSELDSSQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI 154
           FR  LDVVRNEIADV+AR+NLTMRAMANQAP GGAI
Sbjct: 121 FRVTLDVVRNEIADVNARLNLTMRAMANQAPAGGAI 156

[Close]

BLAST of PI0000166.1 vs. NCBI nr
Match: KAA0067252.1 (uncharacterized protein E6C27_scaffold418G00690 [Cucumis melo var. makuwa] >TYK10861.1 uncharacterized protein E5676_scaffold231G00330 [Cucumis melo var. makuwa])

HSP 1 Score: 52.4 bits (124), Expect = 6.4e-03
Identity = 31/50 (62.00%), Postives = 36/50 (72.00%), Query Frame = 0


Query: 154 QGVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKAEGE 204
           Q VQ+ +SAYAAAERLFDL+ DSQD  R  S SP R+ +   SSPKA GE
Sbjct: 307 QRVQDLTSAYAAAERLFDLTSDSQDVRRHQSSSPRRNRNSRPSSPKAVGE 356

HSP 2 Score: 204.5 bits (519), Expect = 1.0e-48
Identity = 125/242 (51.65%), Postives = 153/242 (63.22%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           MS+A   GKA  DRL E+EEQMLYL E PD++R+LES  EE+SEKA  IDAV G ++GLP
Sbjct: 1   MSSADSLGKAQRDRLAELEEQMLYLAEVPDSIRYLESHFEEISEKASTIDAVVGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           I+ELL+RVDTLE  T     INYER  SSS  AAH++E + ELDSSQK+++EMINDMSED
Sbjct: 61  IQELLVRVDTLETNTNVRRTINYERVDSSSGFAAHMEEHVSELDSSQKTLLEMINDMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAIQ----------------------- 180
           FRA LDVVRNEIADV+AR++LT+  +  + P  G  +                       
Sbjct: 121 FRATLDVVRNEIADVNARLSLTICQVVVEVPIHGHTERALHNRYLGRPDERTPLAILLQE 180

Query: 181 --------------GVQEFSSAYAAAERLFDLSPDSQDESRPPSPSPERDEDDCVSSPKA 203
                          VQ  +SAYAA ERLFDL+ DSQD  R  S SP R+ +  +SSPKA
Sbjct: 181 CGNPCSAKAKFDEHRVQHLTSAYAATERLFDLTSDSQDVRRHQSSSPGRNRNSRLSSPKA 240

[Close]

BLAST of PI0000166.1 vs. NCBI nr
Match: TYK04141.1 (uncharacterized protein E5676_scaffold148G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-48
Identity = 106/156 (67.95%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEKA+ IDAV G ++GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           IKELL RVD LE  T     INYERG SSS   AH++E++GELD++QK+++EMIN MSED
Sbjct: 61  IKELLARVDALEENTNARRTINYERGESSSGFGAHMEERVGELDNAQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI 154
           FR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156

[Close]

BLAST of PI0000166.1 vs. NCBI nr
Match: TYK01453.1 (uncharacterized protein E5676_scaffold772G00460 [Cucumis melo var. makuwa] >TYK04803.1 uncharacterized protein E5676_scaffold68G001270 [Cucumis melo var. makuwa] >TYK06318.1 uncharacterized protein E5676_scaffold594G00280 [Cucumis melo var. makuwa] >TYK07978.1 uncharacterized protein E5676_scaffold265G001100 [Cucumis melo var. makuwa] >TYK09491.1 uncharacterized protein E5676_scaffold499G00910 [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-48
Identity = 106/156 (67.95%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MSTAKQTGKAHADRLVEIEEQMLYLLEFPDTVRFLESRIEEVSEKADAIDAVTGCLDGLP 60
           MS++  +GKA  DRLVEIEEQMLYL+E PD++R+LESR++E+SEKA+ IDAV G ++GLP
Sbjct: 1   MSSSNPSGKAQRDRLVEIEEQMLYLVEVPDSIRYLESRVDEISEKANMIDAVAGRVEGLP 60

Query: 61  IKELLIRVDTLEAKTT---RINYERGSSSSSPAAHVKEQIGELDSSQKSIVEMINDMSED 120
           IKELL RVD LE  T     INYERG SSS   AH++E++GELD++QK+++EMIN MSED
Sbjct: 61  IKELLARVDALEENTNARRTINYERGESSSGFGAHMEERVGELDNAQKTLLEMINGMSED 120

Query: 121 FRAALDVVRNEIADVSARVNLTMRAMANQAPTGGAI 154
           FR  LDVVRNEIADV+AR++LTMRAMANQAP GGAI
Sbjct: 121 FRVTLDVVRNEIADVNARLSLTMRAMANQAPAGGAI 156

The following BLAST results are available for this feature:

BLAST of PI0000166.1 vs.


Match Name	E-value	Identity	Description

BLAST of PI0000166.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BQN3	2.2e-49	68.59	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3BQN3	3.8e-01	58.70	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VFV0	3.1e-03	62.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CCE2	6.3e-49	67.95	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CCE2	2.4e-03	63.27	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

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BLAST of PI0000166.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0037518.1	4.5e-49	68.59	uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0037518.1	7.8e-01	58.70	uncharacterized protein E6C27_scaffold277G001300 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0067252.1	6.4e-03	62.00	uncharacterized protein E6C27_scaffold418G00690 [Cucumis melo var. makuwa] >TYK1...	[more]
TYK04141.1	1.3e-48	67.95	uncharacterized protein E5676_scaffold148G00020 [Cucumis melo var. makuwa]	[more]
TYK01453.1	1.3e-48	67.95	uncharacterized protein E5676_scaffold772G00460 [Cucumis melo var. makuwa] >TYK0...	[more]

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BLAST of PI0000166.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 171..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 209..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 182..199

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
PI0000166	PI0000166	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000166.1-exon	PI0000166.1-exon-chr06:7018603..7018860	exon
PI0000166.1-exon	PI0000166.1-exon-chr06:7019311..7019772	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
PI0000166.1-cds	PI0000166.1-cds-chr06:7018603..7018860	CDS
PI0000166.1-cds	PI0000166.1-cds-chr06:7019311..7019772	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
PI0000166.1	PI0000166.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding