Moc11g15020.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g15020.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CACTA en-spm transposon protein
Location	chr11: 11208432 .. 11210476 (-)
Sequence length	819
RNA-Seq Expression	Moc11g15020.1
Synteny	Moc11g15020.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTTGCACCACTCAAAATAGTGGAGTGTGTATTTGGTGGAGATGATAATGAGAGATCCGACTTCTACGGTATTATTAAGGAAGTGATAGAATTGAAGTACATTAAAGACAAACGAGTTCTTCTATTTAGGTGCGATTGGTATGATACAAATCCTAAGAAGAATCATGTTCGTCAAAATAATAACTTTACAAGCATAAACACGCATCACTTATGGTATAAGGATGATCCGTTTATACTTGTTTCTCAAGCACAACAAGTATTTTATGTTGATGATCTCCAATTAGATAATGGATGAAAAGTAGCTCAAAGAATTCAACACAGACATTTATGGGATGTGCCTTAAGTAGAAGAGATTGATTTAGTCGAAGCCAATATCAATCAATGTGCAGTGGATGAAGTGGATCTCGAGACACAAACATTTCATAGACCAGACATAGATCCAAGTATAGTATCTGACAATATTGGTAGAATTGAGATAGTATTAAATTTTGATGAAGTACAAGACGAAATAGAGGATGAGGACGAGGACGAGGACGAAGATGAATATGATGAAACAACATCGTCGGATGAAATGGATGATGACTCTGACATTGATGAGTAATTCAATATGGTATATTATATGTTTTGTCAGTTTATAATTTTTATTTCGGACTAATCCTAACAACTTGTGTTCTGTTTTCTTATTTTCATTATGTAGACAGAATGTCATTAGACAGCGAAGGTGAGGATACCATCGCTGGAATCACACGAGCTCGAGGGGAAACTCGTGGCGAATTCTTGTTACGAGTCGTAAATTCAGTTGGACAAATCAAGCTCGAATGGACGGAGCAACAGGGTAGACCAGTTGGACCTGGGTCAGCTTCGTTTAACAGCGAGATAGGCTATTTGGCACGCAACAATATTGATGTGAAGCGTGCAAAGAAAAAGGAGATAACGGTCCTAGAGACTAATAAAATCATTCAGATGTTACTGGTAAATATTTTTTCTTATGTTGTATTTGTTGACCGCTAATAATTGAATATGTTGTTAACTTGTTTTAATGACTACGTTTTGTAGGAGAAGTTTGTTGTCGATATATCTCAGCCATATGTGCATAGATATATTTTATACGAGATTGGAACTCGATTCAAAGATTATCGAGCGAAACTACATCGCCATTACAAAAAGTCACGTGATCCAGCACGTGCTCGCCAAAAGCCGTATAAAGACATAAAACAAGAAGACTGGAACATATTGTGTGATAGATGAGAATCTCCTGCATGGAAGGTAACTAATATATGATCTTAATTCTTTGTTATCATTTTATAAGTATCGTTTCTTAACTAAACATGTAATTTTGTAGGAAAAATCTGCCAGAAATAAGATGGCACGTAGTAAATTGAGGTTCAATCATCGAGGTGGACCAAAACCATTTCAGTGTCATCGAGAATATTTGGTATGAACCAAATAATTTATTTGAATTGTATTGCTAGTTTAGATTTTAGGTTCTTACTATTTTTACTACAACTTAACAATTTTTTTTAATAGAGAAAAGAATATGAGACATATTTAAGTCCCATTCATATATTCTTCAATATGCATTATTCGGAGGAAAAATGTTGGATTAACGAGGAAGCGAGGAATTCATATGTAAGTATTCATTTAATTTTGTCATACTTAAAGTATTGATGTAAGATATATATATCTTAAAGCTCTTAACGACACATTTATTTTTTTTAGGAAGAAATGATTACCTTAAAGGCGTATCATGCTTCTCAAGGAGACGAAAAAACAGAAGAAGAAATTATGGAGACGGTCCTTGGGAGAAGATCAAACTATATAATACGAATGGGATATGGACCGAAACCCACCAGAAACAAAGGATCATCATCAAAATACTTTGATGAATATGTGGAGTCATTAGAGGCTCGTCTTCAGAAGCATGAGGAAAAATTGGCAACTCAACGAAAAGCGAACGAAGACCAACAAATTGCCACCCAAGAACAAATACAAAAAGCATTGGAGGCTCAAAGCCAGGAGTTTAACAGGAAACTTCTCTAA

mRNA sequence

ATGGTGGTTGCACCACTCAAAATAGTGGAGTGTGTATTTGGTGGAGATGATAATGAGAGATCCGACTTCTACGGTATTATTAAGGAAGTGATAGAATTGAAGTACATTAAAGACAAACGAGTTCTTCTATTTAGAATGTCATTAGACAGCGAAGGTGAGGATACCATCGCTGGAATCACACGAGCTCGAGGGGAAACTCGTGGCGAATTCTTGTTACGAGTCGTAAATTCAGTTGGACAAATCAAGCTCGAATGGACGGAGCAACAGGGTAGACCAGTTGGACCTGGGTCAGCTTCGTTTAACAGCGAGATAGGCTATTTGGCACGCAACAATATTGATGTGAAGCGTGCAAAGAAAAAGGAGATAACGGTCCTAGAGACTAATAAAATCATTCAGATGTTACTGGAAAAATCTGCCAGAAATAAGATGGCACGTAGTAAATTGAGGTTCAATCATCGAGGTGGACCAAAACCATTTCAGTGTCATCGAGAATATTTGGAAGAAATGATTACCTTAAAGGCGTATCATGCTTCTCAAGGAGACGAAAAAACAGAAGAAGAAATTATGGAGACGGTCCTTGGGAGAAGATCAAACTATATAATACGAATGGGATATGGACCGAAACCCACCAGAAACAAAGGATCATCATCAAAATACTTTGATGAATATGTGGAGTCATTAGAGGCTCGTCTTCAGAAGCATGAGGAAAAATTGGCAACTCAACGAAAAGCGAACGAAGACCAACAAATTGCCACCCAAGAACAAATACAAAAAGCATTGGAGGCTCAAAGCCAGGAGTTTAACAGGAAACTTCTCTAA

Coding sequence (CDS)

ATGGTGGTTGCACCACTCAAAATAGTGGAGTGTGTATTTGGTGGAGATGATAATGAGAGATCCGACTTCTACGGTATTATTAAGGAAGTGATAGAATTGAAGTACATTAAAGACAAACGAGTTCTTCTATTTAGAATGTCATTAGACAGCGAAGGTGAGGATACCATCGCTGGAATCACACGAGCTCGAGGGGAAACTCGTGGCGAATTCTTGTTACGAGTCGTAAATTCAGTTGGACAAATCAAGCTCGAATGGACGGAGCAACAGGGTAGACCAGTTGGACCTGGGTCAGCTTCGTTTAACAGCGAGATAGGCTATTTGGCACGCAACAATATTGATGTGAAGCGTGCAAAGAAAAAGGAGATAACGGTCCTAGAGACTAATAAAATCATTCAGATGTTACTGGAAAAATCTGCCAGAAATAAGATGGCACGTAGTAAATTGAGGTTCAATCATCGAGGTGGACCAAAACCATTTCAGTGTCATCGAGAATATTTGGAAGAAATGATTACCTTAAAGGCGTATCATGCTTCTCAAGGAGACGAAAAAACAGAAGAAGAAATTATGGAGACGGTCCTTGGGAGAAGATCAAACTATATAATACGAATGGGATATGGACCGAAACCCACCAGAAACAAAGGATCATCATCAAAATACTTTGATGAATATGTGGAGTCATTAGAGGCTCGTCTTCAGAAGCATGAGGAAAAATTGGCAACTCAACGAAAAGCGAACGAAGACCAACAAATTGCCACCCAAGAACAAATACAAAAAGCATTGGAGGCTCAAAGCCAGGAGTTTAACAGGAAACTTCTCTAA

Protein sequence

MVVAPLKIVECVFGGDDNERSDFYGIIKEVIELKYIKDKRVLLFRMSLDSEGEDTIAGITRARGETRGEFLLRVVNSVGQIKLEWTEQQGRPVGPGSASFNSEIGYLARNNIDVKRAKKKEITVLETNKIIQMLLEKSARNKMARSKLRFNHRGGPKPFQCHREYLEEMITLKAYHASQGDEKTEEEIMETVLGRRSNYIIRMGYGPKPTRNKGSSSKYFDEYVESLEARLQKHEEKLATQRKANEDQQIATQEQIQKALEAQSQEFNRKLL

Homology

[Close]

BLAST of Moc11g15020.1 vs. NCBI nr
Match: XP_022148911.1 (uncharacterized protein LOC111017461 [Momordica charantia])

HSP 1 Score: 218.4 bits (555), Expect = 7.6e-53
Identity = 115/137 (83.94%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 136 EKSARNKMARSKLRFNHRGGPKPFQCHREYLEEMITLKAYHASQGDEKTEEEIMETVLGR 195
           EKSA+NK+ARSKLRFNHRGGPKPFQCHRE  EEMITLKAYHASQGDEKTEEEIMETVLG+
Sbjct: 79  EKSAKNKVARSKLRFNHRGGPKPFQCHREDSEEMITLKAYHASQGDEKTEEEIMETVLGK 138

Query: 196 RSNYIIRMGYGPKPTRNKGSSSKYFDEYVESLEARLQKHEEKLATQRKANEDQQIATQEQ 255
           RSNY+I MGYGPKPTRNKGSSSKY DEYVESLEARLQKHEE++A            TQEQ
Sbjct: 139 RSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEEMAR----------TTQEQ 198

Query: 256 IQKALEAQSQEFNRKLL 273
           IQKALEAQSQEFNRKLL
Sbjct: 199 IQKALEAQSQEFNRKLL 205

[Close]

BLAST of Moc11g15020.1 vs. NCBI nr
Match: XP_022143616.1 (uncharacterized protein LOC111013476 [Momordica charantia])

HSP 1 Score: 218.4 bits (555), Expect = 7.6e-53
Identity = 115/137 (83.94%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 136 EKSARNKMARSKLRFNHRGGPKPFQCHREYLEEMITLKAYHASQGDEKTEEEIMETVLGR 195
           EKSA+NK+ARSKLRFNHRGGPKPFQCHRE  EEMITLKAYHASQGDEKTEEEIMETVLG+
Sbjct: 74  EKSAKNKVARSKLRFNHRGGPKPFQCHREDSEEMITLKAYHASQGDEKTEEEIMETVLGK 133

Query: 196 RSNYIIRMGYGPKPTRNKGSSSKYFDEYVESLEARLQKHEEKLATQRKANEDQQIATQEQ 255
           RSNY+I MGYGPKPTRNKGSSSKY DEYVESLEARLQKHEE++A            TQEQ
Sbjct: 134 RSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEEMAR----------TTQEQ 193

Query: 256 IQKALEAQSQEFNRKLL 273
           IQKALEAQSQEFNRKLL
Sbjct: 194 IQKALEAQSQEFNRKLL 200

[Close]

BLAST of Moc11g15020.1 vs. NCBI nr
Match: XP_022159083.1 (uncharacterized protein LOC111025525 [Momordica charantia])

HSP 1 Score: 186.0 bits (471), Expect = 4.2e-43
Identity = 109/187 (58.29%), Postives = 111/187 (59.36%), Query Frame = 0


Query: 46  MSLDSEGEDTIAGITRARGETRGEFLLRVVNSVGQIKLEWTEQQGRPVGPGSASFNSEIG 105
           MS DSEGEDTIAGITRA+GETRGEFLLRVVN VG+IKLEWTEQQGRPVGPGSASFNSEIG
Sbjct: 1   MSSDSEGEDTIAGITRAQGETRGEFLLRVVNRVGKIKLEWTEQQGRPVGPGSASFNSEIG 60

Query: 106 YLARNNIDVKRAKKKEITVLETNKIIQMLL------------------------------ 163
           YLARN ID KRAKKKEIT LETNKIIQMLL                              
Sbjct: 61  YLARNYIDAKRAKKKEITXLETNKIIQMLLEKFAVDISQPHVHRYILYEIGTRFKDYRAK 120

[Close]

BLAST of Moc11g15020.1 vs. NCBI nr
Match: XP_022153681.1 (uncharacterized protein LOC111021138 [Momordica charantia])

HSP 1 Score: 136.3 bits (342), Expect = 3.8e-28
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 136 EKSARNKMARSKLRFNHRGGPKPFQCHREYLEEMITLKAYHASQGDEKTEEEIMETVLGR 195
           EKSA+NKMA SKLRFNHRG PKPFQCHRE  EEMITLKA HASQGDEKTEEEIMETVLGR
Sbjct: 74  EKSAKNKMASSKLRFNHRGEPKPFQCHREDSEEMITLKANHASQGDEKTEEEIMETVLGR 133

Query: 196 RSNYIIRMGYGPKP 210
           RSNYII MGYGPKP
Sbjct: 134 RSNYIIGMGYGPKP 147

[Close]

BLAST of Moc11g15020.1 vs. NCBI nr
Match: XP_038895319.1 (uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 1.3e-12
Identity = 73/261 (27.97%), Postives = 101/261 (38.70%), Query Frame = 0


Query: 61  RARGETRGEFLLRVVNSVGQIKLEWTEQQGRPVGPGSASFNSEIGYLARNNIDVKRAKKK 120
           R RG +RG  L +   ++G+IK+ WT  QG+P+G  ++ FN EIG L R  I +K  K+K
Sbjct: 136 RVRGASRGVRLNKTTATMGRIKVTWTPTQGKPIGDMASLFNGEIGVLVRKFIPLKYEKQK 195

Query: 121 EITVLETNKIIQMLL--------------------------------------------- 180
           +I     + + + LL                                             
Sbjct: 196 DIPNELYDILTEQLLNQFDVDISQPHIKRYIYYEIGNRFKDYRWTLYKHYQKYADPVEAR 255

Query: 181 -------------------------EKSARNKMARSKLRFNHRGGPKPF----------- 218
                                    EKSARNK++RSK+RFNH GG K F           
Sbjct: 256 RNPYKYTTTDDWNILCDRWESSSWKEKSARNKVSRSKIRFNHCGGSKSFLSRRVDKGKED 315

[Close]

BLAST of Moc11g15020.1 vs. ExPASy TrEMBL
Match: A0A6J1CQT5 (uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013476 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 3.7e-53
Identity = 115/137 (83.94%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 136 EKSARNKMARSKLRFNHRGGPKPFQCHREYLEEMITLKAYHASQGDEKTEEEIMETVLGR 195
           EKSA+NK+ARSKLRFNHRGGPKPFQCHRE  EEMITLKAYHASQGDEKTEEEIMETVLG+
Sbjct: 74  EKSAKNKVARSKLRFNHRGGPKPFQCHREDSEEMITLKAYHASQGDEKTEEEIMETVLGK 133

Query: 196 RSNYIIRMGYGPKPTRNKGSSSKYFDEYVESLEARLQKHEEKLATQRKANEDQQIATQEQ 255
           RSNY+I MGYGPKPTRNKGSSSKY DEYVESLEARLQKHEE++A            TQEQ
Sbjct: 134 RSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEEMAR----------TTQEQ 193

Query: 256 IQKALEAQSQEFNRKLL 273
           IQKALEAQSQEFNRKLL
Sbjct: 194 IQKALEAQSQEFNRKLL 200

[Close]

BLAST of Moc11g15020.1 vs. ExPASy TrEMBL
Match: A0A6J1D6S9 (uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017461 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 3.7e-53
Identity = 115/137 (83.94%), Postives = 121/137 (88.32%), Query Frame = 0


Query: 136 EKSARNKMARSKLRFNHRGGPKPFQCHREYLEEMITLKAYHASQGDEKTEEEIMETVLGR 195
           EKSA+NK+ARSKLRFNHRGGPKPFQCHRE  EEMITLKAYHASQGDEKTEEEIMETVLG+
Sbjct: 79  EKSAKNKVARSKLRFNHRGGPKPFQCHREDSEEMITLKAYHASQGDEKTEEEIMETVLGK 138

Query: 196 RSNYIIRMGYGPKPTRNKGSSSKYFDEYVESLEARLQKHEEKLATQRKANEDQQIATQEQ 255
           RSNY+I MGYGPKPTRNKGSSSKY DEYVESLEARLQKHEE++A            TQEQ
Sbjct: 139 RSNYVIGMGYGPKPTRNKGSSSKYSDEYVESLEARLQKHEEEMAR----------TTQEQ 198

Query: 256 IQKALEAQSQEFNRKLL 273
           IQKALEAQSQEFNRKLL
Sbjct: 199 IQKALEAQSQEFNRKLL 205

[Close]

BLAST of Moc11g15020.1 vs. ExPASy TrEMBL
Match: A0A6J1DXU5 (uncharacterized protein LOC111025525 OS=Momordica charantia OX=3673 GN=LOC111025525 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 2.0e-43
Identity = 109/187 (58.29%), Postives = 111/187 (59.36%), Query Frame = 0


Query: 46  MSLDSEGEDTIAGITRARGETRGEFLLRVVNSVGQIKLEWTEQQGRPVGPGSASFNSEIG 105
           MS DSEGEDTIAGITRA+GETRGEFLLRVVN VG+IKLEWTEQQGRPVGPGSASFNSEIG
Sbjct: 1   MSSDSEGEDTIAGITRAQGETRGEFLLRVVNRVGKIKLEWTEQQGRPVGPGSASFNSEIG 60

Query: 106 YLARNNIDVKRAKKKEITVLETNKIIQMLL------------------------------ 163
           YLARN ID KRAKKKEIT LETNKIIQMLL                              
Sbjct: 61  YLARNYIDAKRAKKKEITXLETNKIIQMLLEKFAVDISQPHVHRYILYEIGTRFKDYRAK 120

[Close]

BLAST of Moc11g15020.1 vs. ExPASy TrEMBL
Match: A0A6J1DLF1 (uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021138 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.8e-28
Identity = 67/74 (90.54%), Postives = 68/74 (91.89%), Query Frame = 0


Query: 136 EKSARNKMARSKLRFNHRGGPKPFQCHREYLEEMITLKAYHASQGDEKTEEEIMETVLGR 195
           EKSA+NKMA SKLRFNHRG PKPFQCHRE  EEMITLKA HASQGDEKTEEEIMETVLGR
Sbjct: 74  EKSAKNKMASSKLRFNHRGEPKPFQCHREDSEEMITLKANHASQGDEKTEEEIMETVLGR 133

Query: 196 RSNYIIRMGYGPKP 210
           RSNYII MGYGPKP
Sbjct: 134 RSNYIIGMGYGPKP 147

[Close]

BLAST of Moc11g15020.1 vs. ExPASy TrEMBL
Match: A0A6J1D6Q8 (uncharacterized protein LOC111017452 OS=Momordica charantia OX=3673 GN=LOC111017452 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 3.0e-10
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 11  CVFGGDDNERSDFYGIIKEVIELKYIKDKRVLLFR 46
           CVFGGDDNERSDFYGIIKEVIELKYIKDKRVLLFR
Sbjct: 86  CVFGGDDNERSDFYGIIKEVIELKYIKDKRVLLFR 120

The following BLAST results are available for this feature:

BLAST of Moc11g15020.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148911.1	7.6e-53	83.94	uncharacterized protein LOC111017461 [Momordica charantia]	[more]
XP_022143616.1	7.6e-53	83.94	uncharacterized protein LOC111013476 [Momordica charantia]	[more]
XP_022159083.1	4.2e-43	58.29	uncharacterized protein LOC111025525 [Momordica charantia]	[more]
XP_022153681.1	3.8e-28	90.54	uncharacterized protein LOC111021138 [Momordica charantia]	[more]
XP_038895319.1	1.3e-12	27.97	uncharacterized protein LOC120083572 isoform X1 [Benincasa hispida]	[more]

BLAST of Moc11g15020.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g15020.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CQT5	3.7e-53	83.94	uncharacterized protein LOC111013476 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1D6S9	3.7e-53	83.94	uncharacterized protein LOC111017461 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A6J1DXU5	2.0e-43	58.29	uncharacterized protein LOC111025525 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DLF1	1.8e-28	90.54	uncharacterized protein LOC111021138 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1D6Q8	3.0e-10	100.00	uncharacterized protein LOC111017452 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]

BLAST of Moc11g15020.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 224..251

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g15020	Moc11g15020	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g15020.1.exon4	Moc11g15020.1.exon4	exon
Moc11g15020.1.exon3	Moc11g15020.1.exon3	exon
Moc11g15020.1.exon2	Moc11g15020.1.exon2	exon
Moc11g15020.1.exon1	Moc11g15020.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g15020.1	cds.Moc11g15020.1_4	CDS
cds.Moc11g15020.1	cds.Moc11g15020.1_3	CDS
cds.Moc11g15020.1	cds.Moc11g15020.1_2	CDS
cds.Moc11g15020.1	cds.Moc11g15020.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g15020.1	Moc11g15020.1-protein	polypeptide