Moc11g14390.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g14390.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	chr11: 10671419 .. 10673325 (+)
Sequence length	894
RNA-Seq Expression	Moc11g14390.1
Synteny	Moc11g14390.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAAGAACTTCATCAAGCCGAAGAACTTCACAAGCGCAAAGCCGAAGACTTCAAAGATTCAATAAGCTCAAAGCCGAAAACTTCAAAAAGTCTTCATCAAGCTATAAGCCAAAAGAACTTCGTCAACAAGTTGAAGTCTTTAACAAGCACAAAGCCGATGTTGAGTTATGAGTTTTTTTCTTGTAACACAAATTTAATTTTCAGTTTTTTATTTCTTTAAGTTTCTTTCTTTTAATTTTCAGTTTTTTATCTTTAAGTTTCATTTTTATGAATGGTAAGTTTCTCCATTTTAATGTTGGTAAGTTATGTGTTTTGTACACCTATATAAGAGTGAACTTCTACGAGAAGTTTGTATCACCAACATTTGTACTATTTCATTTGTTTATTCACATTTTTTAATCACTTCAATTTGAAGTTGATTTCTCATCTACTGCTTTTACTCTCTCACATTTCATTTCATATTTCCTCATTGTTCATCAAACATTGATAATTTTACTATTGCTTCTGCATTATTTTTATCACTTTCATTTTCTCAATAGTGGTATCATTTTTCTCAACAGTGGTATTAGAGCCTTAGATTTAAAGGGCTATGATTTTATTTGAGAGAGAGAAATTCAAATTTCTTATTTGATAATGTCTTCTAATTTTGGTGTTACCTCTCCTCTACATTTTAGTGGTGAAAACTACCAATTTTGGGTTGTTAATATGCAATCTTATCTCAAAGCACTTGGCCTTTGGGAATCAGTTTCAACAGATGCCGATCCTGAGACATTGGGAGAAAATATGACATTGAATCGTATCAAATTATATGAAGAGGAGAAGTTAAAGAAGCCTAAAGCTTTATCTGTAATTCATGATTCTTTATCTCATCCTATATTTGCTAGAATTATTGATTGTAAAACAGCAAAAGAAGCTTGGGATAAATTACAGGAGGAATTTGAAGGAAGTGCAAGGGTAAAAGCTGTCAAATTATTAACTCTCAAAAGAGAGTTTGAGATGCTCAAGATGAAAGATTCAGATTCTATAAGGGACAACACAACTAAAGTGATAACCATTGTGAACCAGATCAGACTGGCTGGTGAATATTTTCCAGATCAAAGAGTTGTGGACAAAATAATGGTTAGTGTTCCTAGCAAATTTGAATCAAAGATCTCAGCAATAGAGGAGTCTTCTGATCTTACTACTCTGTTTATTGCTGAGTTAATTAGCAAGTTACAAGACCAGAATAGAGGGATACAATTCGTAACGATAAGCATGTTGAAGGTGCCTTTAATGTCAAGTTCAAAGGCAAGAAACATGCTGCACAAGATGATAAAAAATCAACCAAAGATCGGGGGAGCAAGGGAAAAGAAGGAGTGTCAAAGAATGGTAAATTTCCTCCTTGTCATTTTTGTAAAAAGACCAACCATACTGAGAAAGATTATTGGTACAAAAACAAACAAGTCTTCCATTGTGACTATTGTAACAAGGATGGTCATACATAGAAGTTTTGTTATGCCAAACAAAACCAAGCCCAAAATCCCCAGCAACAAGCAAATTATGCAGACAACAATCAAGAAACAAATTTGTTGTTTATGGCTTCTCATACAAGTAACAACGAGTCAACCTTATGGCTAATTGACAGCAAATGCACTACCCATATGGCTAAAGATATCAATTTTTTTAGCCAAATTGACAGATCTATACGGTCTAAGGTGGTTCTTGGACATGGTGAAATGGTACTAGCTGAAGGTAAAGGAACTGTTGTCATGCAAACTAAGCAAGGTGAAAAGATAATATCAAATGTTTTATATGTTCAAAGATTATCTCAAAACTTGCTTAGTATTGCTCAATTGTTGCATAACAATATTTCTGTGGTTTTTAAAGATCAAGATTGCGCTATTTATGACCATCATGGAGTAG

mRNA sequence

ATGACTGAAGAACTTCATCAAGCCGAAGAACTTCACAAGCGCAAAGCCGAAGACTTCAAAGATTCAATAAGCTCAAAGCCGAAAACTTCAAAAAGTCTTCATCAAGCTATAAGCCAAAAGAACTTCGTCAACAAGTTGAAGTCTTTAACAAGCACAAAGCCGATTGGTGAAAACTACCAATTTTGGGTTGTTAATATGCAATCTTATCTCAAAGCACTTGGCCTTTGGGAATCAGTTTCAACAGATGCCGATCCTGAGACATTGGGAGAAAATATGACATTGAATCGTATCAAATTATATGAAGAGGAGAAGTTAAAGAAGCCTAAAGCTTTATCTGTAATTCATGATTCTTTATCTCATCCTATATTTGCTAGAATTATTGATTGTAAAACAGCAAAAGAAGCTTGGGATAAATTACAGGAGGAATTTGAAGGAAGTGCAAGGGTAAAAGCTGTCAAATTATTAACTCTCAAAAGAGAGTTTGAGATGCTCAAGATGAAAGATTCAGATTCTATAAGGGACAACACAACTAAAGTGATAACCATTGTGAACCAGATCAGACTGGCTGGTGAATATTTTCCAGATCAAAGAGTTGTGGACAAAATAATGGTTAGTGTTCCTAGCAAATTTGAATCAAAGATCTCAGCAATAGAGGAGTCTTCTGATCTTACTACTCTGTTTATTGCTGAGTTAATTAGCAAGTTACAAGACCAGAATAGAGGGATACAATTCGTAACGATAAGCATGTTGAAGGTGCCTTTAATGTCAAGTTCAAAGGCAAGAAACATGCTGCACAAGATGATAAAAAATCAACCAAAGATCGGGGGAGCAAGGGAAAAGAAGGAGTGTCAAAGAATGATCAAGATTGCGCTATTTATGACCATCATGGAGTAG

Coding sequence (CDS)

ATGACTGAAGAACTTCATCAAGCCGAAGAACTTCACAAGCGCAAAGCCGAAGACTTCAAAGATTCAATAAGCTCAAAGCCGAAAACTTCAAAAAGTCTTCATCAAGCTATAAGCCAAAAGAACTTCGTCAACAAGTTGAAGTCTTTAACAAGCACAAAGCCGATTGGTGAAAACTACCAATTTTGGGTTGTTAATATGCAATCTTATCTCAAAGCACTTGGCCTTTGGGAATCAGTTTCAACAGATGCCGATCCTGAGACATTGGGAGAAAATATGACATTGAATCGTATCAAATTATATGAAGAGGAGAAGTTAAAGAAGCCTAAAGCTTTATCTGTAATTCATGATTCTTTATCTCATCCTATATTTGCTAGAATTATTGATTGTAAAACAGCAAAAGAAGCTTGGGATAAATTACAGGAGGAATTTGAAGGAAGTGCAAGGGTAAAAGCTGTCAAATTATTAACTCTCAAAAGAGAGTTTGAGATGCTCAAGATGAAAGATTCAGATTCTATAAGGGACAACACAACTAAAGTGATAACCATTGTGAACCAGATCAGACTGGCTGGTGAATATTTTCCAGATCAAAGAGTTGTGGACAAAATAATGGTTAGTGTTCCTAGCAAATTTGAATCAAAGATCTCAGCAATAGAGGAGTCTTCTGATCTTACTACTCTGTTTATTGCTGAGTTAATTAGCAAGTTACAAGACCAGAATAGAGGGATACAATTCGTAACGATAAGCATGTTGAAGGTGCCTTTAATGTCAAGTTCAAAGGCAAGAAACATGCTGCACAAGATGATAAAAAATCAACCAAAGATCGGGGGAGCAAGGGAAAAGAAGGAGTGTCAAAGAATGATCAAGATTGCGCTATTTATGACCATCATGGAGTAG

Protein sequence

MTEELHQAEELHKRKAEDFKDSISSKPKTSKSLHQAISQKNFVNKLKSLTSTKPIGENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIHDSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDNTTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKLQDQNRGIQFVTISMLKVPLMSSSKARNMLHKMIKNQPKIGGAREKKECQRMIKIALFMTIME

Homology

[Close]

BLAST of Moc11g14390.1 vs. NCBI nr
Match: XP_022156661.1 (uncharacterized protein LOC111023510 [Momordica charantia])

HSP 1 Score: 253.4 bits (646), Expect = 2.3e-63
Identity = 139/180 (77.22%), Postives = 149/180 (82.78%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENYQFW V MQSYLKALGLWE VSTD D E LGEN+TLNRI L+EE+KL KPK LS+IH
Sbjct: 15  GENYQFWGVKMQSYLKALGLWELVSTDVDLEPLGENLTLNRIGLHEEKKL-KPKGLSIIH 74

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            SLS+PIFA+IIDCKTAKEA DKLQEEFEGS             EFEMLKMKDSDS+ D 
Sbjct: 75  ASLSNPIFAKIIDCKTAKEALDKLQEEFEGSG------------EFEMLKMKDSDSVMDY 134

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
           TTKV+TIVNQIRL GE F DQRVV+KIMVSVPSKFESKIS IEESS+LTTL IAELISKL
Sbjct: 135 TTKVMTIVNQIRLGGENFQDQRVVEKIMVSVPSKFESKISDIEESSNLTTLSIAELISKL 181

[Close]

BLAST of Moc11g14390.1 vs. NCBI nr
Match: XP_015167177.1 (PREDICTED: uncharacterized protein LOC107061811 [Solanum tuberosum])

HSP 1 Score: 230.3 bits (586), Expect = 2.1e-56
Identity = 110/185 (59.46%), Postives = 147/185 (79.46%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENY  WV+ M++YLKAL LWE++ T+ DP  LG N T+ ++K+YE+ K +KPKAL  +H
Sbjct: 16  GENYHIWVIKMKAYLKALSLWETIETEDDPLPLGPNPTVAQMKIYEDAKSRKPKALRCLH 75

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            +LS  IF RI+ C+T KE W+KL+EEF+GS RVK VKLLTLKREFEML+M + D+++  
Sbjct: 76  SALSDVIFTRIMACETPKEVWEKLKEEFDGSDRVKTVKLLTLKREFEMLRMNEGDTVKKY 135

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
           + K++ IVN++RL GE FPD RVV+K+M+S+P++FESKISAIEES DL TL +AELISKL
Sbjct: 136 SAKLVEIVNKVRLFGETFPDSRVVEKMMISLPARFESKISAIEESCDLKTLSVAELISKL 195

Query: 236 QDQNR 241
           Q Q +
Sbjct: 196 QAQEQ 200

[Close]

BLAST of Moc11g14390.1 vs. NCBI nr
Match: XP_015169132.1 (PREDICTED: uncharacterized protein LOC107062702 [Solanum tuberosum])

HSP 1 Score: 221.5 bits (563), Expect = 9.9e-54
Identity = 104/185 (56.22%), Postives = 147/185 (79.46%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENY  WV+ M++YLK L LWE++ ++ DP  L  N T+ ++K+YE+ K +KPKAL+ ++
Sbjct: 16  GENYHIWVIKMKAYLKVLSLWETIESEDDPLPLEPNPTVAQMKIYEDAKSRKPKALTCLY 75

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            +LS  IF +I+ C+T KE W+KL+EEF+GS RVK VKLLTLKREFEML+MK+ D++++ 
Sbjct: 76  SALSDVIFTKIMACETPKEVWEKLKEEFDGSDRVKTVKLLTLKREFEMLRMKEGDTVKEY 135

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
           + K++ IVN++R  GE FPD RVV+K+M+S+P++FESKISAIEE  DL TL++AELISKL
Sbjct: 136 SAKLVEIVNKVRPFGEAFPDSRVVEKMMISLPARFESKISAIEEYCDLKTLYVAELISKL 195

Query: 236 QDQNR 241
           Q Q +
Sbjct: 196 QAQEQ 200

[Close]

BLAST of Moc11g14390.1 vs. NCBI nr
Match: XP_015165534.1 (PREDICTED: uncharacterized protein LOC107061209 [Solanum tuberosum])

HSP 1 Score: 221.5 bits (563), Expect = 9.9e-54
Identity = 118/244 (48.36%), Postives = 167/244 (68.44%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENY  WV+ M++YLKAL LWE + ++ DP  LG N T+ ++K+YE+ K +KPKAL+ +H
Sbjct: 16  GENYHIWVIKMKAYLKALSLWEIIESEDDPLPLGPNPTVAQMKIYEDAKSRKPKALTCLH 75

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            +LS  IF RI+ C+T KE W+KL++EF+GS RVK +KLLTLKREFE+L+MK+ D +++ 
Sbjct: 76  STLSDVIFTRIMACETPKEVWEKLKKEFDGSDRVKTIKLLTLKREFEILRMKEGDIVKEY 135

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
           + K++ IVN++RL GE F D +VV+K+M+S+P++FESKISAIEES DL TL +AELISKL
Sbjct: 136 SAKLVEIVNKVRLFGETFLDSKVVEKMMISLPARFESKISAIEESCDLKTLSVAELISKL 195

Query: 236 QDQNRGIQFVTISMLKVPLMSSSKARNMLHKMIKNQPKIGGAREK--KECQRMIKIALFM 295
           Q Q +        + +V   +  K R  + K  +      GARE   +  QR     L  
Sbjct: 196 QAQEQRSSIRDEEVEEVAFQAQHKGRQPM-KDNRRMEGDKGARENHGRNLQRKGSFHLAA 255

Query: 296 TIME 298
           T+ E
Sbjct: 256 TVKE 258

[Close]

BLAST of Moc11g14390.1 vs. NCBI nr
Match: KAA8526936.1 (hypothetical protein F0562_008835 [Nyssa sinensis])

HSP 1 Score: 220.3 bits (560), Expect = 2.2e-53
Identity = 105/185 (56.76%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENYQ WV+ M++YLKAL LWE+V  D DP  LG++ T+ ++K YEE+K KKP+AL+ +H
Sbjct: 16  GENYQVWVIKMKAYLKALNLWEAVENDTDPAPLGDDPTIAQLKNYEEQKAKKPRALTCLH 75

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            +LS  IF  +I C+T KE W+KL+EE+EGS RVK VKLLTLKREFEM KMK+ +++++ 
Sbjct: 76  SALSKTIFLSVIACETPKEIWEKLREEYEGSQRVKNVKLLTLKREFEMHKMKEGETVKEY 135

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
             K++ IVN+I+L GE FPD  +V+K+++S+P+ FE KISAIEES DLT L + ELISKL
Sbjct: 136 ARKLMEIVNKIKLFGESFPDSEIVEKMLISLPATFEPKISAIEESCDLTRLTVTELISKL 195

Query: 236 QDQNR 241
             Q +
Sbjct: 196 HAQEQ 200

[Close]

BLAST of Moc11g14390.1 vs. ExPASy TrEMBL
Match: A0A6J1DVL9 (uncharacterized protein LOC111023510 OS=Momordica charantia OX=3673 GN=LOC111023510 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.1e-63
Identity = 139/180 (77.22%), Postives = 149/180 (82.78%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENYQFW V MQSYLKALGLWE VSTD D E LGEN+TLNRI L+EE+KL KPK LS+IH
Sbjct: 15  GENYQFWGVKMQSYLKALGLWELVSTDVDLEPLGENLTLNRIGLHEEKKL-KPKGLSIIH 74

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            SLS+PIFA+IIDCKTAKEA DKLQEEFEGS             EFEMLKMKDSDS+ D 
Sbjct: 75  ASLSNPIFAKIIDCKTAKEALDKLQEEFEGSG------------EFEMLKMKDSDSVMDY 134

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
           TTKV+TIVNQIRL GE F DQRVV+KIMVSVPSKFESKIS IEESS+LTTL IAELISKL
Sbjct: 135 TTKVMTIVNQIRLGGENFQDQRVVEKIMVSVPSKFESKISDIEESSNLTTLSIAELISKL 181

[Close]

BLAST of Moc11g14390.1 vs. ExPASy TrEMBL
Match: A0A5J5AB20 (DUF4219 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_008835 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 105/185 (56.76%), Postives = 143/185 (77.30%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENYQ WV+ M++YLKAL LWE+V  D DP  LG++ T+ ++K YEE+K KKP+AL+ +H
Sbjct: 16  GENYQVWVIKMKAYLKALNLWEAVENDTDPAPLGDDPTIAQLKNYEEQKAKKPRALTCLH 75

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            +LS  IF  +I C+T KE W+KL+EE+EGS RVK VKLLTLKREFEM KMK+ +++++ 
Sbjct: 76  SALSKTIFLSVIACETPKEIWEKLREEYEGSQRVKNVKLLTLKREFEMHKMKEGETVKEY 135

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
             K++ IVN+I+L GE FPD  +V+K+++S+P+ FE KISAIEES DLT L + ELISKL
Sbjct: 136 ARKLMEIVNKIKLFGESFPDSEIVEKMLISLPATFEPKISAIEESCDLTRLTVTELISKL 195

Query: 236 QDQNR 241
             Q +
Sbjct: 196 HAQEQ 200

[Close]

BLAST of Moc11g14390.1 vs. ExPASy TrEMBL
Match: A0A5J5BDI3 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_024332 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.1e-53
Identity = 103/185 (55.68%), Postives = 145/185 (78.38%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENYQ WV+ M++YLKAL LWE V  D +P  LG++ T+ ++K YEE++ KKP+AL+ +H
Sbjct: 16  GENYQVWVIKMKTYLKALNLWEVVENDTNPSPLGDDPTIAQLKNYEEQRAKKPRALTCLH 75

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            +LS  IF  ++ C+T KE W+KL+EE+EGS RVK VKLLTLKREFEM KMK+ +++++ 
Sbjct: 76  SALSETIFLSVMACETPKEIWEKLREEYEGSQRVKNVKLLTLKREFEMHKMKERETVKEY 135

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
             K++ IVN+I+L GE FPD ++V+K+++S+P++FE KISAIEES DLT L +AELISKL
Sbjct: 136 AGKLVEIVNKIKLFGEPFPDSKIVEKMLISLPARFEPKISAIEESCDLTKLTVAELISKL 195

Query: 236 QDQNR 241
             Q +
Sbjct: 196 HAQEQ 200

[Close]

BLAST of Moc11g14390.1 vs. ExPASy TrEMBL
Match: A0A5J5C5Q6 (Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_001970 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.1e-53
Identity = 103/185 (55.68%), Postives = 145/185 (78.38%), Query Frame = 0


Query: 56  GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
           GENYQ WV+ M++YLKAL LWE+V  D DP  LG++ T+ ++K YEE+K KKP+AL+ +H
Sbjct: 16  GENYQVWVIKMKTYLKALNLWEAVENDTDPAPLGDDPTIAQLKNYEEQKAKKPRALTCLH 75

Query: 116 DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
            ++S  IF  ++ C+T KE W+KL+EE+EGS RVK VKLLT KREFEM KMK+ +++++ 
Sbjct: 76  SAISETIFLSVMACETPKEIWEKLREEYEGSQRVKNVKLLTRKREFEMHKMKERETVKEY 135

Query: 176 TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
             K++ IVN+I+L GE FPD ++V+K+++S+P++FE KISAIEES DLT L +AELISKL
Sbjct: 136 AGKLMEIVNKIKLFGEPFPDSKIVEKMLISLPARFEPKISAIEESCDLTKLTVAELISKL 195

Query: 236 QDQNR 241
             Q +
Sbjct: 196 HAQEQ 200

[Close]

BLAST of Moc11g14390.1 vs. ExPASy TrEMBL
Match: A0A2G3BNR5 (NB-ARC domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_24604 PE=3 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 3.1e-53
Identity = 113/227 (49.78%), Postives = 162/227 (71.37%), Query Frame = 0


Query: 56   GENYQFWVVNMQSYLKALGLWESVSTDADPETLGENMTLNRIKLYEEEKLKKPKALSVIH 115
            GEN   WV+ M++YLKAL LWE+V ++ D   LG N T+ ++K YE+ K KKPKAL+ +H
Sbjct: 829  GENSHIWVIKMKAYLKALSLWEAVESENDLPPLGPNPTVAQMKNYEDAKSKKPKALTCLH 888

Query: 116  DSLSHPIFARIIDCKTAKEAWDKLQEEFEGSARVKAVKLLTLKREFEMLKMKDSDSIRDN 175
             +LS  IF RI+ C+T KE W+KL EEF+GS RVK++KLLTLKREFEML+MK+ D++++ 
Sbjct: 889  SALSDMIFTRIMACETPKEVWEKLNEEFDGSDRVKSIKLLTLKREFEMLRMKEGDTVKEY 948

Query: 176  TTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAELISKL 235
            +TK++ I+N+IRL GE F D +VV+K+M+S+PS+FESKISAIEES DL TL +AELISK 
Sbjct: 949  STKLLKIINKIRLFGETFLDSKVVEKMMISLPSRFESKISAIEESCDLKTLSVAELISKS 1008

Query: 236  QDQNRGIQFVTISMLKVPLMSSSKARNMLHKMIKNQPKIGGAREKKE 283
            Q Q +        + ++   S  K +    + +K+  ++ G +  K+
Sbjct: 1009 QAQEQRTSIRDEKVEEMAFQSKHKGK----QPVKDNRRMEGDKTAKK 1051

[Close]

BLAST of Moc11g14390.1 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-09
Identity = 43/182 (23.63%), Postives = 83/182 (45.60%), Query Frame = 0


Query: 58  NYQFWVVNMQSYLKALGLWESV--STDADPE---TLGENMTLNRIKLYEEEKLKKPKALS 117
           +Y+ W    +S L   GLW+ V      DP     L   +    +  + +  +K  KAL 
Sbjct: 16  DYEIWAPITKSTLIEQGLWDVVVNGVPQDPSKNPELAATIQPEELSKWRDFVVKDAKALQ 75

Query: 118 VIHDSLSHPIFARIIDCKTAKEAWDKLQEEFEGSA--RVKAVKLLTLKREFEMLKMKDSD 177
           ++  SL+  +F + +   +AK+ WD L++  E +   R++ V +  L+++ E LKM D +
Sbjct: 76  ILQSSLTDSVFRKTLSASSAKDVWDLLRKGNEQATIRRLEQVTIRRLEKQLEDLKMVDKE 135

Query: 178 SIRDNTTKVITIVNQIRLAGEYFPDQRVVDKIMVSVPSKFESKISAIEESSDLTTLFIAE 233
           S      K + I+ ++  A     D  +   +  ++   F+   S +EE  D+  +    
Sbjct: 136 SGSSYLDKALEILERLGRAKLEKSDYEICKNVFTTLSGSFDGLDSMLEELIDVHKMTSKS 195

The following BLAST results are available for this feature:

BLAST of Moc11g14390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156661.1	2.3e-63	77.22	uncharacterized protein LOC111023510 [Momordica charantia]	[more]
XP_015167177.1	2.1e-56	59.46	PREDICTED: uncharacterized protein LOC107061811 [Solanum tuberosum]	[more]
XP_015169132.1	9.9e-54	56.22	PREDICTED: uncharacterized protein LOC107062702 [Solanum tuberosum]	[more]
XP_015165534.1	9.9e-54	48.36	PREDICTED: uncharacterized protein LOC107061209 [Solanum tuberosum]	[more]
KAA8526936.1	2.2e-53	56.76	hypothetical protein F0562_008835 [Nyssa sinensis]	[more]

BLAST of Moc11g14390.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g14390.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVL9	1.1e-63	77.22	uncharacterized protein LOC111023510 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A5J5AB20	1.1e-53	56.76	DUF4219 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_008835 PE...	[more]
A0A5J5BDI3	3.1e-53	55.68	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_024332 PE=4 SV=1	[more]
A0A5J5C5Q6	3.1e-53	55.68	Uncharacterized protein OS=Nyssa sinensis OX=561372 GN=F0562_001970 PE=4 SV=1	[more]
A0A2G3BNR5	3.1e-53	49.78	NB-ARC domain-containing protein OS=Capsicum chinense OX=80379 GN=BC332_24604 PE...	[more]

BLAST of Moc11g14390.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21000.1	2.7e-09	23.63	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 106..238 e-value: 7.3E-27 score: 93.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 56..240
None	No IPR available	PANTHER	PTHR35317:SF11	SUBFAMILY NOT NAMED	coord: 56..240

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g14390	Moc11g14390	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g14390.1.exon1	Moc11g14390.1.exon1	exon
Moc11g14390.1.exon2	Moc11g14390.1.exon2	exon
Moc11g14390.1.exon3	Moc11g14390.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g14390.1	cds.Moc11g14390.1	CDS
cds.Moc11g14390.1	cds.Moc11g14390.1_2	CDS
cds.Moc11g14390.1	cds.Moc11g14390.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g14390.1	Moc11g14390.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding