Moc11g14320.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g14320.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	SWIM-type domain-containing protein
Location	chr11: 10633685 .. 10636279 (-)
Sequence length	705
RNA-Seq Expression	Moc11g14320.1
Synteny	Moc11g14320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTACGTACCAAATTAAGACAACCAATAAGCATGCAACGGCTAGTTGGCTTGCTGAGCAGTTTTGACAGATTTAAGACTCAACTGGATGTGGATTGGAGAGCAATTGTAGATCTTGTGAGGAAGGACTTTAATATTAACATCTCAAGGCATCAAGCATATAGAGCAAGGAAGATTGCAATGCGTAAGCTTGAAGGTAGAATTGAGATGCAATATGCCAAGATATGGGATTACAGTGAGGAATTGAGGAGATATAGTTCTGGTAGTTCTTGTTTACTAAGTATAGATATACCTCAAATTCATATGCAACCTATCTTTAGAAGCATGTAAATTTGTCTCACAACATTTAAAAATGAGTTTTTACAAGGCTATAGACCAATAATTGGGTTAGATGGGTGTCATTTGAAGATTACAACTCATGGGTAATTGTTGACTATTGTGAGAATAGATGGGAATGAAGAGATTTTTCCATTAGCTTTGGCTGCGGTAGATGTAGAGTCGAAGGAAAAATTGATGGGTGTTTATGACTGATCAACAAAATGTAAGATTTATTTATATTAAATGTGATTTTATTGTTGATTTTTTTTGCTAATGTATGGTAATATTTTTAATCTTTTCTATTTTAGGGTTTAATTTCCGTCATTGAGAAAGTGGCTCCTAACGCTGAACATAGGATTTGTGTACGCCATTTGTATGGTAATTTCAAGAAACATTTCAAAGGTAAGTAATTTATATAAATACATTTCAATCTGTTTAATTTATATTTAATGGTTGGAGCTTCTACATATATTGTTGTGGGCAGTGTGATATAGCTCAATAATTTTTAAGAATGACCTTTATACATGAGGAGATATGTATAGACAATTTGTGCACCTTGTGATCTTATTTTGATTGTTATTAGGGTTGTAAAAGAGTTTATTCAGCCAAAATTCATGAGACTACTTGTTTAAGAAAAACTTAAAAGTTAAACTAATGTTTAAACCAACCTTTTGGTGAACTACCTCACTCATAGTGGTCAAAACTAATTGGATCAATATCAAGTCACGTTTATTGGTCAAATCGATTGAGTCAACTTTGTAATTTGTTTTGAGGTGAGATAGACTTTTAACCATGCTTATTTCCAACCAATTTATTTATTTATAGTCTAGCTAGCTGATACTAGCAGATGATTGAATGAATGTGTTATTTTCTACTCGATGGAACTTGGAAATTAAAATTTTAATATTGATTTGTTGAGGAAATGCAAGATCACTGAGCATGGGAGTTGAATATGATAGAATTGTTGTATATAATAGAATCACCTTTATTAATAAATTGTTGTATATTGATCTCATAATTAACGCAGTTCCTACGAAACTTTGGACAAGACGTGCATTTAAATCACACTCAAAATATGACATGCTGCTTAATTACATAAGTGAGTCATTTAATTCCTACATAATTAGAGGCTAGGAGCAAGCAAATTCTTACTATGTTCGAAGTGATTAGGAAAACCTTATGTCTCAGGTTCATAAAAAGCTAGAGGTCTTAGAAAAATGAGAGGGAAAGCTTACACCAAAAATTCAAGCTAAGTTAGAAAGGGCCAAACAACTTTCTAACAATGGGTCTCCTAAGCTTTCAGGTGGTGAAAGATTTGAGGTAGAAGATGAGAGGAAACAGTTCATAGTAGACTTTATTCAATATGCACACATGTACTTGCTATACATAGGATTTGACGGGAATACCGTACCCTCCCTCCATTAAATTTATTTGGTTCATGAGGAAAGACCCCGAAGATTATGTGTATAGGTATTTTCATAAACAAACTTTTGATATTACCTACTCTCACTATATTCAATCAATTAATGGAGTAGATCTTTGGCATAATACTTGTTATGGAGAACGAAAATGACCCGAAACGAGACAAGGAGTTGAAGTCTGATTGGGGAAGACCGGCCCGGGACATAACGGGCCGGCCAAAAGAGTGACCTAACGCTGGGGCAGAGAATGAGGAAAGCGACCAGAGGGAAGCCCACTGAGCCACGAAGGGCTCGGCCCCGACCTGGTGCTCGGCCCCGACCCGGTGCTCGGCCCCGACCCGGTGCTCGACCCCGACCCGGTGCTCGGCGTCGACCCGGTGCTCGGCCCCGACCCGGGGCTTGGTCCCGAGCCGTGCTCGGCCCACGGCCCAGCCAGTGATCCCCCGTCTTCGATCGACGATGTCGCCCAGGCCCTGCAACGGTGCATTAGGGTTAGCTACGGAAGATTCTGGAACAACTTCACGCTATAAGTATTGATCCAGCCTTAGAGGTATAGGGGGAAGAGAGTTGACTACATTTACGTTATTCTCTTGCTAACTTAAGCATCGGAGCCCGTGTGACTAGAGTCGCATCGGTTTAGCTCGATTTGATTTTGCAGGTACTAGTCCCGGATCAACAAGTTTGGTGGATGCGAGGTAGTGAACCGGAGGACCGAAATCCACGCATCAACAATTGGCGCCGTCTGTGGGGACGATACAGCAAAACGAGTTTCGTCGAAGCAAAATCCCGATCTGAGGTGAAATTTCGATCCAAGGCGTGTAGGGTGCAGTGGCCGACCATTCAGGCGTGGTAG

mRNA sequence

ATGAATGTACGTACCAAATTAAGACAACCAATAAGCATGCAACGGCTAGTTGGCTTGCTGAGCAGTTTTGACAGATTTAAGACTCAACTGGATGTGGATTGGAGAGCAATTGTAGATCTTGTGAGGAAGGACTTTAATATTAACATCTCAAGGCATCAAGCATATAGAGCAAGGAAGATTGCAATGCGTAAGCTTGAAGGTAGAATTGAGATGCAATATGCCAAGATATGGGATTACAGTGAGGAATTGAGGAGATATAGTTCTGGTAGTTCTTGTTTACTAAAGGGAAGCCCACTGAGCCACGAAGGGCTCGGCCCCGACCTGGTGCTCGGCCCCGACCCGGTGCTCGGCCCCGACCCGGTGCTCGACCCCGACCCGGTGCTCGGCGTCGACCCGGTGCTCGGCCCCGACCCGGGGCTTGGTCCCGAGCCGTGCTCGGCCCACGGCCCAGCCAGTGATCCCCCGTCTTCGATCGACGATGTCGCCCAGGCCCTGCAACGGTGCATTAGGGTACTAGTCCCGGATCAACAAGTTTGGTGGATGCGAGGTAGTGAACCGGAGGACCGAAATCCACGCATCAACAATTGGCGCCGTCTGTGGGGACGATACAGCAAAACGAGTTTCGTCGAAGCAAAATCCCGATCTGAGGTGAAATTTCGATCCAAGGCGTGTAGGGTGCAGTGGCCGACCATTCAGGCGTGGTAG

Coding sequence (CDS)

ATGAATGTACGTACCAAATTAAGACAACCAATAAGCATGCAACGGCTAGTTGGCTTGCTGAGCAGTTTTGACAGATTTAAGACTCAACTGGATGTGGATTGGAGAGCAATTGTAGATCTTGTGAGGAAGGACTTTAATATTAACATCTCAAGGCATCAAGCATATAGAGCAAGGAAGATTGCAATGCGTAAGCTTGAAGGTAGAATTGAGATGCAATATGCCAAGATATGGGATTACAGTGAGGAATTGAGGAGATATAGTTCTGGTAGTTCTTGTTTACTAAAGGGAAGCCCACTGAGCCACGAAGGGCTCGGCCCCGACCTGGTGCTCGGCCCCGACCCGGTGCTCGGCCCCGACCCGGTGCTCGACCCCGACCCGGTGCTCGGCGTCGACCCGGTGCTCGGCCCCGACCCGGGGCTTGGTCCCGAGCCGTGCTCGGCCCACGGCCCAGCCAGTGATCCCCCGTCTTCGATCGACGATGTCGCCCAGGCCCTGCAACGGTGCATTAGGGTACTAGTCCCGGATCAACAAGTTTGGTGGATGCGAGGTAGTGAACCGGAGGACCGAAATCCACGCATCAACAATTGGCGCCGTCTGTGGGGACGATACAGCAAAACGAGTTTCGTCGAAGCAAAATCCCGATCTGAGGTGAAATTTCGATCCAAGGCGTGTAGGGTGCAGTGGCCGACCATTCAGGCGTGGTAG

Protein sequence

MNVRTKLRQPISMQRLVGLLSSFDRFKTQLDVDWRAIVDLVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIWDYSEELRRYSSGSSCLLKGSPLSHEGLGPDLVLGPDPVLGPDPVLDPDPVLGVDPVLGPDPGLGPEPCSAHGPASDPPSSIDDVAQALQRCIRVLVPDQQVWWMRGSEPEDRNPRINNWRRLWGRYSKTSFVEAKSRSEVKFRSKACRVQWPTIQAW

Homology

[Close]

BLAST of Moc11g14320.1 vs. NCBI nr
Match: XP_022156713.1 (uncharacterized protein LOC111023558 [Momordica charantia])

HSP 1 Score: 83.6 bits (205), Expect = 2.5e-12
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 40  LVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIWDYSEELRRYSSGSSCLL 95
           LVRKDFNINISRHQAYRARKIAM KLEG +EMQYAK+ DY EEL R +  SS LL
Sbjct: 224 LVRKDFNINISRHQAYRARKIAMHKLEGTVEMQYAKLRDYCEELWRSNPDSSYLL 278

[Close]

BLAST of Moc11g14320.1 vs. NCBI nr
Match: KAG5522743.1 (hypothetical protein RHGRI_034780 [Rhododendron griersonianum])

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-08
Identity = 38/111 (34.23%), Postives = 59/111 (53.15%), Query Frame = 0


Query: 23  FDRFKTQLDVDWRAIVDLVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIWDYSEE 82
           FD  +   ++  + +V+ VR+DF  N+SR Q Y AR+  +RK+EGR+E QYAK+WDY  E
Sbjct: 348 FDDIRISPNIKTKELVEKVRQDFTCNVSRSQCYMARRKVLRKIEGRVEDQYAKLWDYCHE 407

Query: 83  LRRYSSGSSCLLKGSP--------------LSHEGLGPDLVLGPDPVLGPD 120
           ++R +  +S  +   P              +  E L    V G  P++G D
Sbjct: 408 IKRTNPDTSVYIHLKPDQDGIATNVFQRFYICWEALKKGFVEGCRPIVGVD 458

[Close]

BLAST of Moc11g14320.1 vs. NCBI nr
Match: GBP14842.1 (hypothetical protein EVAR_75430_1 [Eumeta japonica])

HSP 1 Score: 70.1 bits (170), Expect = 2.9e-08
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 104 LGPDLVLGPDPVLGPDPVLDPDPVLGVDPVLGPDPGLGPEPCSAHGPASDPPS 157
           LGPDLVLGPDPVLGPDP LDPDP L  DP LGPDP L  +P     PA   P+
Sbjct: 48  LGPDLVLGPDPVLGPDPALDPDPALDSDPALGPDPALDSDPALGPDPAGPDPA 100

[Close]

BLAST of Moc11g14320.1 vs. NCBI nr
Match: ONI01883.1 (hypothetical protein PRUPE_6G164700 [Prunus persica])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-07
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 19  LLSSFDR-FKTQLDVDWRAIVDLVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIW 78
           L   FD   +T  ++     + LVRK ++IN++R Q Y+A+ +A   ++G IE QY+K+W
Sbjct: 158 LAKRFDEDLRTNPNMSVAEFMTLVRKHYSINVTRDQCYKAKNLAKESIQGSIEEQYSKLW 217

Query: 79  DYSEELRRYSSGSSCLLKGS 98
           DY E+L+R + GS+ L+K S
Sbjct: 218 DYCEKLKRQNPGSTVLVKTS 237

[Close]

BLAST of Moc11g14320.1 vs. NCBI nr
Match: KAF7143828.1 (hypothetical protein RHSIM_Rhsim05G0156600 [Rhododendron simsii])

HSP 1 Score: 67.8 bits (164), Expect = 1.4e-07
Identity = 30/76 (39.47%), Postives = 47/76 (61.84%), Query Frame = 0


Query: 23  FDRFKTQLDVDWRAIVDLVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIWDYSEE 82
           FD  +    +  + +V  V++DF  N+SR Q Y AR+  +RK+EG +E QYAK+WDY  E
Sbjct: 397 FDDIRISPSIKTKELVQKVQEDFTCNVSRSQCYTARQKVLRKIEGGVEDQYAKLWDYCHE 456

Query: 83  LRRYSSGSSCLLKGSP 99
           ++R + G+S  +   P
Sbjct: 457 IKRTNPGTSVYIHLKP 472

[Close]

BLAST of Moc11g14320.1 vs. ExPASy TrEMBL
Match: A0A6J1DRD2 (uncharacterized protein LOC111023558 OS=Momordica charantia OX=3673 GN=LOC111023558 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.2e-12
Identity = 43/55 (78.18%), Postives = 46/55 (83.64%), Query Frame = 0


Query: 40  LVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIWDYSEELRRYSSGSSCLL 95
           LVRKDFNINISRHQAYRARKIAM KLEG +EMQYAK+ DY EEL R +  SS LL
Sbjct: 224 LVRKDFNINISRHQAYRARKIAMHKLEGTVEMQYAKLRDYCEELWRSNPDSSYLL 278

[Close]

BLAST of Moc11g14320.1 vs. ExPASy TrEMBL
Match: A0A4C1TJZ3 (Uncharacterized protein OS=Eumeta variegata OX=151549 GN=EVAR_75430_1 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.4e-08
Identity = 35/53 (66.04%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 104 LGPDLVLGPDPVLGPDPVLDPDPVLGVDPVLGPDPGLGPEPCSAHGPASDPPS 157
           LGPDLVLGPDPVLGPDP LDPDP L  DP LGPDP L  +P     PA   P+
Sbjct: 48  LGPDLVLGPDPVLGPDPALDPDPALDSDPALGPDPALDSDPALGPDPAGPDPA 100

[Close]

BLAST of Moc11g14320.1 vs. ExPASy TrEMBL
Match: A0A251NRG0 (SWIM-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G164700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.9e-08
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 19  LLSSFDR-FKTQLDVDWRAIVDLVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIW 78
           L   FD   +T  ++     + LVRK ++IN++R Q Y+A+ +A   ++G IE QY+K+W
Sbjct: 158 LAKRFDEDLRTNPNMSVAEFMTLVRKHYSINVTRDQCYKAKNLAKESIQGSIEEQYSKLW 217

Query: 79  DYSEELRRYSSGSSCLLKGS 98
           DY E+L+R + GS+ L+K S
Sbjct: 218 DYCEKLKRQNPGSTVLVKTS 237

[Close]

BLAST of Moc11g14320.1 vs. ExPASy TrEMBL
Match: M5XAA0 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa026245mg PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 6.9e-08
Identity = 32/80 (40.00%), Postives = 52/80 (65.00%), Query Frame = 0


Query: 19  LLSSFDR-FKTQLDVDWRAIVDLVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIW 78
           L   FD   +T  ++     + LVRK ++IN++R Q Y+A+ +A   ++G IE QY+K+W
Sbjct: 186 LAKRFDEDLRTNPNMSVAEFMTLVRKHYSINVTRDQCYKAKNLAKESIQGSIEEQYSKLW 245

Query: 79  DYSEELRRYSSGSSCLLKGS 98
           DY E+L+R + GS+ L+K S
Sbjct: 246 DYCEKLKRQNPGSTVLVKTS 265

[Close]

BLAST of Moc11g14320.1 vs. ExPASy TrEMBL
Match: A0A2N9HUS0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43291 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.6e-07
Identity = 35/72 (48.61%), Postives = 47/72 (65.28%), Query Frame = 0


Query: 24  DRFKTQLDVDWRAIVDLVRKDFNINISRHQAYRARKIAMRKLEGRIEMQYAKIWDYSEEL 83
           +R   Q D+    I + V K F +NISR +AYRA+KIA+ K+EG  + QY++I DY  EL
Sbjct: 379 NRISEQPDMPCSTIQEKVHKKFVVNISRSKAYRAKKIALEKIEGSHKEQYSRIRDYCTEL 438

Query: 84  RRYSSGSSCLLK 96
            R + GSS LLK
Sbjct: 439 LRTNGGSSVLLK 450

The following BLAST results are available for this feature:

BLAST of Moc11g14320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156713.1	2.5e-12	78.18	uncharacterized protein LOC111023558 [Momordica charantia]	[more]
KAG5522743.1	2.9e-08	34.23	hypothetical protein RHGRI_034780 [Rhododendron griersonianum]	[more]
GBP14842.1	2.9e-08	66.04	hypothetical protein EVAR_75430_1 [Eumeta japonica]	[more]
ONI01883.1	1.4e-07	40.00	hypothetical protein PRUPE_6G164700 [Prunus persica]	[more]
KAF7143828.1	1.4e-07	39.47	hypothetical protein RHSIM_Rhsim05G0156600 [Rhododendron simsii]	[more]

BLAST of Moc11g14320.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g14320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRD2	1.2e-12	78.18	uncharacterized protein LOC111023558 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A4C1TJZ3	1.4e-08	66.04	Uncharacterized protein OS=Eumeta variegata OX=151549 GN=EVAR_75430_1 PE=4 SV=1	[more]
A0A251NRG0	6.9e-08	40.00	SWIM-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_6G164700 ...	[more]
M5XAA0	6.9e-08	40.00	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa026245mg PE=4 SV=1	[more]
A0A2N9HUS0	2.6e-07	48.61	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43291 PE=4 SV=1	[more]

BLAST of Moc11g14320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 133..157

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g14320	Moc11g14320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g14320.1.exon3	Moc11g14320.1.exon3	exon
Moc11g14320.1.exon2	Moc11g14320.1.exon2	exon
Moc11g14320.1.exon1	Moc11g14320.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g14320.1	cds.Moc11g14320.1_3	CDS
cds.Moc11g14320.1	cds.Moc11g14320.1_2	CDS
cds.Moc11g14320.1	cds.Moc11g14320.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g14320.1	Moc11g14320.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006310	DNA recombination
biological_process	GO:0032196	transposition
molecular_function	GO:0003676	nucleic acid binding