Moc11g13220.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g13220.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	CCHC-type domain-containing protein
Location	chr11: 9789263 .. 9790786 (+)
Sequence length	720
RNA-Seq Expression	Moc11g13220.1
Synteny	Moc11g13220.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTAGCAGAGAAGTCAGGTTTTGAAGGAATCATGAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGTAGGGATGAAAGATGAAGATTGGTAGAGACGAATTAACAGCCAGTTGCCTTTATCAGATTGTGTTTATCGATGAATGTGGCAAGTCACGTAGCAAACGAAACGACAGCAGTAGATCTTATGAAAGCAAGAATAGGTACGAGAAACCCTCAGCTAATAATAAGGTATATCTCTTAAGAGTGTTCTTTTAACATTCAAATGGAAGAAAATACTATTGTCAATTCTCAGATAAATGAGGTCACAAAATTAATCAATCAATTGACATCAGTTAAGATTACTTTTAGTGACGAAGTGAATGTTATTCAGTTGCTAACATCTTTACCTGAAAGTTGGGAAACGATGAAGACAGCAGTGTCCGATTCATTAGGAGACATATCTTCGAAATTTTTGGAAAGAATCTACTTTCGAACAAGACTGAGTATTGACTGTCGAAAAAGGTAAAGAGAAGGTTGTGTCTGATGACAGGCAGCAGAAGCATAGTAGGAGGGATTGGAAGAGAGATGCTGAATGTTTTCATTGCCACAAAAAATGCCACATCAAGAAAGACTGTAGAATATTGAAAGAGGATCTGAAAAGGTATATGGCAGAGTCAAATGCAGTTGTAGACGATGCCCTCGTCTCTGTTGAAAGCAACACAGAAACAGAAAACCAGTCATCAGAGCGAGTAATAGACAGCGCAGTTCCAGTACACATATCTCTAAATAGAAGATTATTCACATCTTTCAGAAGAGGCAATCACGGCCACGTGAAGATGGGGAATGGAAGACTTTTCAAGACTAAAGGGATTTGAAATATATGATTGAAGACCGATAGTGGGACTGAGTTATTACTGCAAGATGTCAGGTATGTACCCAGTATCATAATGAACCTTATCTCTACAGGTAAGTTGGACGATGATGGTTATTAGAGTGAGTTTGGTGGGAACCAGTGGAAGCTCACCAAAGGATCCAAGTTGGTGGCAATTGACCATAGAAGATCTACAGTTTACACGTTGCAATTGAGTGTTGCCAGAGGATCATTGAAACAGTGGATGCAAGTTACAGATGGTGTCCAAAGAGGTAGGACTGAGCCAACAACAAAGACAACTAGAACAGATCATGAGGATCTGCCATCAATTCAGGAACAATGTCAATTGGTAAGTCAAAGAATGAGAACATGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTATCAGACGAATGGGTGAATTGATGAAGTCGCGTCAGCGAACAGTTGCATCAGAGAAGATGAACTCAGTAGTTGTTGAGGTAAAGACTAGAGCTTCAATTCTGGCAGCAGGCTTGAATACAGTTGTCAAGTCATCAGTGAGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAACAAAGAAGGAAGCTTCAGATATCGCCACTTAG

mRNA sequence

ATGAGATTAGCAGAGAAGTCAGGTTTTGAAGGAATCATGAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGTAGGGATGAAAGATGAAGATTGGCAGCAGAAGCATAGTAGGAGGGATTGGAAGAGAGATGCTGAATGTTTTCATTGCCACAAAAAATGCCACATCAAGAAAGACTGTAGAATATTGAAAGAGGATCTGAAAAGGTATATGGCAGAGTCAAATGCAGTTGTAGACGATGCCCTCGTCTCTGTTGAAAGCAACACAGAAACAGAAAACCAGTCATCAGAGCGATGGATGCAAGTTACAGATGGTGTCCAAAGAGGTAGGACTGAGCCAACAACAAAGACAACTAGAACAGATCATGAGGATCTGCCATCAATTCAGGAACAATGTCAATTGGTAAGTCAAAGAATGAGAACATGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTATCAGACGAATGGGTGAATTGATGAAGTCGCGTCAGCGAACAGTTGCATCAGAGAAGATGAACTCAGTAGTTGTTGAGGTAAAGACTAGAGCTTCAATTCTGGCAGCAGGCTTGAATACAGTTGTCAAGTCATCAGTGAGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAACAAAGAAGGAAGCTTCAGATATCGCCACTTAG

Coding sequence (CDS)

ATGAGATTAGCAGAGAAGTCAGGTTTTGAAGGAATCATGAAGTTCGATGGGGCCAATTTCGAATATTGGAAGATGCAGATTAAGGATTACTTGACCTGCAAGAAGTTGAATAAAGCTTTAAAGGAACGACCAGTAGGGATGAAAGATGAAGATTGGCAGCAGAAGCATAGTAGGAGGGATTGGAAGAGAGATGCTGAATGTTTTCATTGCCACAAAAAATGCCACATCAAGAAAGACTGTAGAATATTGAAAGAGGATCTGAAAAGGTATATGGCAGAGTCAAATGCAGTTGTAGACGATGCCCTCGTCTCTGTTGAAAGCAACACAGAAACAGAAAACCAGTCATCAGAGCGATGGATGCAAGTTACAGATGGTGTCCAAAGAGGTAGGACTGAGCCAACAACAAAGACAACTAGAACAGATCATGAGGATCTGCCATCAATTCAGGAACAATGTCAATTGGTAAGTCAAAGAATGAGAACATGTTCTTTAGGTTGTCTGGGATTATCTCCAGTTATCAGACGAATGGGTGAATTGATGAAGTCGCGTCAGCGAACAGTTGCATCAGAGAAGATGAACTCAGTAGTTGTTGAGGTAAAGACTAGAGCTTCAATTCTGGCAGCAGGCTTGAATACAGTTGTCAAGTCATCAGTGAGAAGTTCTTTCTTCAAGAATCAGTGTTTGAGAACAAAGAAGGAAGCTTCAGATATCGCCACTTAG

Protein sequence

MRLAEKSGFEGIMKFDGANFEYWKMQIKDYLTCKKLNKALKERPVGMKDEDWQQKHSRRDWKRDAECFHCHKKCHIKKDCRILKEDLKRYMAESNAVVDDALVSVESNTETENQSSERWMQVTDGVQRGRTEPTTKTTRTDHEDLPSIQEQCQLVSQRMRTCSLGCLGLSPVIRRMGELMKSRQRTVASEKMNSVVVEVKTRASILAAGLNTVVKSSVRSSFFKNQCLRTKKEASDIAT

Homology

[Close]

BLAST of Moc11g13220.1 vs. NCBI nr
Match: XP_024021224.1 (uncharacterized protein LOC112091537 [Morus notabilis])

HSP 1 Score: 65.1 bits (157), Expect = 9.5e-07
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 11 GIMKFDGANFEYWKMQIKDYLTCKKLNKALKERPVGMKDEDWQ 54
          GI KFDG +F YWKMQ++DYL  KKL+  L E+P GMKDE+WQ
Sbjct: 10 GITKFDGLDFAYWKMQMEDYLYSKKLHLPLGEKPEGMKDEEWQ 52

[Close]

BLAST of Moc11g13220.1 vs. NCBI nr
Match: XP_022138046.1 (kirola-like [Momordica charantia])

HSP 1 Score: 59.7 bits (143), Expect = 4.0e-05
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 174 RRMGELMKSRQRTVASEKMNSVVVEVKTRASILAAGLNTVVKSSVRS 221
           RRMGELMKSRQ+TVASEKMN V  EV    SILA  LNTVVKS+V S
Sbjct: 59  RRMGELMKSRQQTVASEKMNPVGTEVNNGVSILAVDLNTVVKSTVGS 105

[Close]

BLAST of Moc11g13220.1 vs. NCBI nr
Match: XP_021769901.1 (probable L-type lectin-domain containing receptor kinase S.5 [Chenopodium quinoa])

HSP 1 Score: 58.5 bits (140), Expect = 8.9e-05
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 14  KFDGANFEYWKMQIKDYLTCKKLNKALKE-RPVGMKDEDW 53
           KFDGA+F +WKMQIKDYL  KKL + L E +P GMKDEDW
Sbjct: 392 KFDGADFGFWKMQIKDYLYQKKLYEPLLEKKPEGMKDEDW 431

[Close]

BLAST of Moc11g13220.1 vs. NCBI nr
Match: BBH05460.1 (hypothetical protein Prudu_016848 [Prunus dulcis])

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-04
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 3  LAEKSGFEGIMKFDGANFEYWKMQIKDYLTCKKLNKALKE-RPVGMKDEDW 53
          +A   G   I KFDGA+F +WKMQI+DYL  KKL + L E +P GM DEDW
Sbjct: 1  MAADEGKMKIEKFDGADFGFWKMQIEDYLYQKKLYQPLSENKPEGMNDEDW 51

[Close]

BLAST of Moc11g13220.1 vs. NCBI nr
Match: BBG97541.1 (disease resistance family protein / LRR family protein [Prunus dulcis])

HSP 1 Score: 57.8 bits (138), Expect = 1.5e-04
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 3   LAEKSGFEGIMKFDGANFEYWKMQIKDYLTCKKLNKALKE-RPVGMKDEDW 53
           +A   G   I KFDGA+F +WKMQI+DYL  KKL + L E +P GM DEDW
Sbjct: 546 MAADEGKMKIEKFDGADFGFWKMQIEDYLYQKKLYQPLSENKPEGMNDEDW 596

[Close]

BLAST of Moc11g13220.1 vs. ExPASy TrEMBL
Match: A0A6J1C8L4 (kirola-like OS=Momordica charantia OX=3673 GN=LOC111009302 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0


Query: 174 RRMGELMKSRQRTVASEKMNSVVVEVKTRASILAAGLNTVVKSSVRS 221
           RRMGELMKSRQ+TVASEKMN V  EV    SILA  LNTVVKS+V S
Sbjct: 59  RRMGELMKSRQQTVASEKMNPVGTEVNNGVSILAVDLNTVVKSTVGS 105

[Close]

BLAST of Moc11g13220.1 vs. ExPASy TrEMBL
Match: A0A803LFR5 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.3e-05
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 0


Query: 14  KFDGANFEYWKMQIKDYLTCKKLNKALKE-RPVGMKDEDW 53
           KFDGA+F +WKMQIKDYL  KKL + L E +P GMKDEDW
Sbjct: 318 KFDGADFGFWKMQIKDYLYQKKLYEPLLEKKPEGMKDEDW 357

[Close]

BLAST of Moc11g13220.1 vs. ExPASy TrEMBL
Match: A0A4Y1RCM7 (CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_012406 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-05
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 3  LAEKSGFEGIMKFDGANFEYWKMQIKDYLTCKKLNKALKE-RPVGMKDEDW 53
          +A   G   I KFDGA+F +WKMQI+DYL  KKL + L E +P GM DEDW
Sbjct: 1  MAADEGKMKIEKFDGADFGFWKMQIEDYLYQKKLYQPLSENKPEGMNDEDW 51

[Close]

BLAST of Moc11g13220.1 vs. ExPASy TrEMBL
Match: A0A4Y1QV92 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_004434 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-05
Identity = 29/51 (56.86%), Postives = 35/51 (68.63%), Query Frame = 0


Query: 3  LAEKSGFEGIMKFDGANFEYWKMQIKDYLTCKKLNKALKE-RPVGMKDEDW 53
          +A   G   I KFDGA+F +WKMQI+DYL  KKL + L E +P GM DEDW
Sbjct: 1  MAADEGKMKIEKFDGADFGFWKMQIEDYLYQKKLYQPLSENKPEGMNDEDW 51

[Close]

BLAST of Moc11g13220.1 vs. ExPASy TrEMBL
Match: A0A2P5CH01 (Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.3e-05
Identity = 29/54 (53.70%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 1  MRLAEKSGFEGIMKFDGANFEYWKMQIKDYLTCKKLNKAL-KERPVGMKDEDWQ 54
          M   E SG  GI KFDG NF YW++QI DYL  KKL++ L +++P  M+D+DWQ
Sbjct: 1  MARGEGSG-PGIDKFDGKNFSYWRLQINDYLHNKKLHQPLSRKKPEKMEDDDWQ 53

The following BLAST results are available for this feature:

BLAST of Moc11g13220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_024021224.1	9.5e-07	65.12	uncharacterized protein LOC112091537 [Morus notabilis]	[more]
XP_022138046.1	4.0e-05	74.47	kirola-like [Momordica charantia]	[more]
XP_021769901.1	8.9e-05	70.00	probable L-type lectin-domain containing receptor kinase S.5 [Chenopodium quinoa...	[more]
BBH05460.1	1.5e-04	56.86	hypothetical protein Prudu_016848 [Prunus dulcis]	[more]
BBG97541.1	1.5e-04	56.86	disease resistance family protein / LRR family protein [Prunus dulcis]	[more]

BLAST of Moc11g13220.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g13220.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C8L4	1.9e-05	74.47	kirola-like OS=Momordica charantia OX=3673 GN=LOC111009302 PE=3 SV=1	[more]
A0A803LFR5	4.3e-05	70.00	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A4Y1RCM7	7.3e-05	56.86	CCHC-type domain-containing protein OS=Prunus dulcis OX=3755 GN=Prudu_012406 PE=...	[more]
A0A4Y1QV92	7.3e-05	56.86	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=Prudu_004434 PE=4 SV=1	[more]
A0A2P5CH01	7.3e-05	53.70	Zinc finger, CCHC-type OS=Parasponia andersonii OX=3476 GN=PanWU01x14_153190 PE=...	[more]

BLAST of Moc11g13220.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..144

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g13220	Moc11g13220	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g13220.1.exon1	Moc11g13220.1.exon1	exon
Moc11g13220.1.exon2	Moc11g13220.1.exon2	exon
Moc11g13220.1.exon3	Moc11g13220.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g13220.1	cds.Moc11g13220.1	CDS
cds.Moc11g13220.1	cds.Moc11g13220.1_2	CDS
cds.Moc11g13220.1	cds.Moc11g13220.1_3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g13220.1	Moc11g13220.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response