Moc11g05240.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g05240.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	TPD1 protein-like protein 1-like
Location	chr11: 3471627 .. 3471952 (-)
Sequence length	252
RNA-Seq Expression	Moc11g05240.1
Synteny	Moc11g05240.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAATTTTCAGGCAACTGCCAATGCTCGTTGGGTGACATTTCAATCAAGCAAGAAGCAACTGAAAAAAGAGTTGGAGGGCAGCAAGAATGGTTAGTGACAGTCTCAAACAACTGTGTTTGTTCTCAGTACAATGTGAAGTTGGATTGCACTGGATTTTCCTCAGAGGAGATTGTTGATTCATCAAAGTTAACAAATACTGGGAATGAGTGTTTGATCAACGGTGGTCGGCCAATCTTCAAATCAGATCCCATCTCCTTCACTTATGCTTGGGATCTTATTTTCCCTTTCAAGCCCCTCTCCTCCCAAGTTGCTTGTTCTTAA

mRNA sequence

ATGAATAATTTTCAGGCAACTGCCAATGCTCGTTGGGTGACATTTCAATCAAGCAAGAAGCAACTGAAAAAAGAGTTGGAGGGCAGCAAGAATGAGGAGATTGTTGATTCATCAAAGTTAACAAATACTGGGAATGAGTGTTTGATCAACGGTGGTCGGCCAATCTTCAAATCAGATCCCATCTCCTTCACTTATGCTTGGGATCTTATTTTCCCTTTCAAGCCCCTCTCCTCCCAAGTTGCTTGTTCTTAA

Coding sequence (CDS)

ATGAATAATTTTCAGGCAACTGCCAATGCTCGTTGGGTGACATTTCAATCAAGCAAGAAGCAACTGAAAAAAGAGTTGGAGGGCAGCAAGAATGAGGAGATTGTTGATTCATCAAAGTTAACAAATACTGGGAATGAGTGTTTGATCAACGGTGGTCGGCCAATCTTCAAATCAGATCCCATCTCCTTCACTTATGCTTGGGATCTTATTTTCCCTTTCAAGCCCCTCTCCTCCCAAGTTGCTTGTTCTTAA

Protein sequence

MNNFQATANARWVTFQSSKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVACS

Homology

[Close]

BLAST of Moc11g05240.1 vs. NCBI nr
Match: XP_022141896.1 (uncharacterized protein At1g05835-like [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 2.1e-22
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           S+  +K +  G  +EEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS
Sbjct: 57  SQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 116

Query: 78  SQVACS 84
           SQVACS
Sbjct: 117 SQVACS 122

[Close]

BLAST of Moc11g05240.1 vs. NCBI nr
Match: XP_017617499.1 (PREDICTED: uncharacterized protein At1g05835-like [Gossypium arboreum] >KHG09846.1 hypothetical protein F383_05114 [Gossypium arboreum] >KHG15126.1 hypothetical protein F383_19054 [Gossypium arboreum] >KHG19660.1 hypothetical protein F383_24223 [Gossypium arboreum])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           ++  LK   +G +  E VDSS +  TG ECLINGG+P+  S  +SF YAWD  FPFKPLS
Sbjct: 57  TQSDLKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLS 116

Query: 78  SQVACS 84
           SQ+ CS
Sbjct: 117 SQINCS 122

[Close]

BLAST of Moc11g05240.1 vs. NCBI nr
Match: XP_016675584.1 (uncharacterized protein At1g05835-like [Gossypium hirsutum] >KAB2047720.1 hypothetical protein ES319_A13G066500v1 [Gossypium barbadense] >TYG85600.1 hypothetical protein ES288_A13G068300v1 [Gossypium darwinii] >TYH90762.1 hypothetical protein ES332_A13G071300v1 [Gossypium tomentosum] >TYJ00145.1 hypothetical protein E1A91_A13G067800v1 [Gossypium mustelinum] >KAG4165160.1 hypothetical protein ERO13_A13G061900v2 [Gossypium hirsutum])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           ++  LK   +G +  E VDSS +  TG ECLINGG+P+  S  +SF YAWD  FPFKPLS
Sbjct: 57  TQSDLKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLS 116

Query: 78  SQVACS 84
           SQ+ CS
Sbjct: 117 SQINCS 122

[Close]

BLAST of Moc11g05240.1 vs. NCBI nr
Match: MBA0698815.1 (hypothetical protein [Gossypium aridum] >MBA0815788.1 hypothetical protein [Gossypium harknessii] >TYI45886.1 hypothetical protein E1A91_D13G069600v1 [Gossypium mustelinum])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           ++  LK   +G +  E VDSS +  TG ECLINGG+P+  S  +SF YAWD  FPFKPLS
Sbjct: 57  TQSDLKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLS 116

Query: 78  SQVACS 84
           SQ+ CS
Sbjct: 117 SQINCS 122

[Close]

BLAST of Moc11g05240.1 vs. NCBI nr
Match: MBA0727464.1 (hypothetical protein [Gossypium laxum])

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-11
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 18 SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
          ++  LK   +G +  E VDSS +  TG ECLINGG+P+  S  +SF YAWD  FPFKPLS
Sbjct: 20 TQSDLKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLS 79

Query: 78 SQVACS 84
          SQ+ CS
Sbjct: 80 SQINCS 85

[Close]

BLAST of Moc11g05240.1 vs. ExPASy TrEMBL
Match: A0A6J1CKK7 (uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC111012144 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.0e-22
Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           S+  +K +  G  +EEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS
Sbjct: 57  SQYNVKLDCTGFSSEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 116

Query: 78  SQVACS 84
           SQVACS
Sbjct: 117 SQVACS 122

[Close]

BLAST of Moc11g05240.1 vs. ExPASy TrEMBL
Match: A0A0B0NVJ4 (uncharacterized protein At1g05835-like OS=Gossypium arboreum OX=29729 GN=LOC108462001 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           ++  LK   +G +  E VDSS +  TG ECLINGG+P+  S  +SF YAWD  FPFKPLS
Sbjct: 57  TQSDLKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLS 116

Query: 78  SQVACS 84
           SQ+ CS
Sbjct: 117 SQINCS 122

[Close]

BLAST of Moc11g05240.1 vs. ExPASy TrEMBL
Match: A0A2P5Y751 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G066500v1 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           ++  LK   +G +  E VDSS +  TG ECLINGG+P+  S  +SF YAWD  FPFKPLS
Sbjct: 57  TQSDLKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLS 116

Query: 78  SQVACS 84
           SQ+ CS
Sbjct: 117 SQINCS 122

[Close]

BLAST of Moc11g05240.1 vs. ExPASy TrEMBL
Match: A0A5D2MHY1 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G071300v1 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           ++  LK   +G +  E VDSS +  TG ECLINGG+P+  S  +SF YAWD  FPFKPLS
Sbjct: 57  TQSDLKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLS 116

Query: 78  SQVACS 84
           SQ+ CS
Sbjct: 117 SQINCS 122

[Close]

BLAST of Moc11g05240.1 vs. ExPASy TrEMBL
Match: A0A1U8II66 (uncharacterized protein At1g05835-like OS=Gossypium hirsutum OX=3635 GN=LOC107894929 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.1e-11
Identity = 36/66 (54.55%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 18  SKKQLKKELEGSKNEEIVDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLS 77
           ++  LK   +G +  E VDSS +  TG ECLINGG+P+  S  +SF YAWD  FPFKPLS
Sbjct: 57  TQSDLKLSCDGFQTVEAVDSSLMAKTGAECLINGGQPVASSSNLSFNYAWDTSFPFKPLS 116

Query: 78  SQVACS 84
           SQ+ CS
Sbjct: 117 SQINCS 122

[Close]

BLAST of Moc11g05240.1 vs. TAIR 10
Match: AT4G32110.1 (Beta-1,3-N-Acetylglucosaminyltransferase family protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.2e-04
Identity = 17/48 (35.42%), Postives = 25/48 (52.08%), Query Frame = 0


Query: 35  VDSSKLTNTGNECLINGGRPIFKSDPISFTYAWDLIFPFKPLSSQVAC 83
           +D+S L  +G+ CL+N G+ I     I F Y WD  F  K +   + C
Sbjct: 76  IDTSLLLKSGDACLVNAGKFIVPHVDIVFKYVWDTSFDLKVIDGVMVC 123

The following BLAST results are available for this feature:

BLAST of Moc11g05240.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022141896.1	2.1e-22	83.33	uncharacterized protein At1g05835-like [Momordica charantia]	[more]
XP_017617499.1	2.2e-11	54.55	PREDICTED: uncharacterized protein At1g05835-like [Gossypium arboreum] >KHG09846...	[more]
XP_016675584.1	2.2e-11	54.55	uncharacterized protein At1g05835-like [Gossypium hirsutum] >KAB2047720.1 hypoth...	[more]
MBA0698815.1	2.2e-11	54.55	hypothetical protein [Gossypium aridum] >MBA0815788.1 hypothetical protein [Goss...	[more]
MBA0727464.1	2.2e-11	54.55	hypothetical protein [Gossypium laxum]	[more]

BLAST of Moc11g05240.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g05240.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CKK7	1.0e-22	83.33	uncharacterized protein At1g05835-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0B0NVJ4	1.1e-11	54.55	uncharacterized protein At1g05835-like OS=Gossypium arboreum OX=29729 GN=LOC1084...	[more]
A0A2P5Y751	1.1e-11	54.55	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G066500v1 PE...	[more]
A0A5D2MHY1	1.1e-11	54.55	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A13G071300v1 P...	[more]
A0A1U8II66	1.1e-11	54.55	uncharacterized protein At1g05835-like OS=Gossypium hirsutum OX=3635 GN=LOC10789...	[more]

BLAST of Moc11g05240.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G32110.1	6.2e-04	35.42	Beta-1,3-N-Acetylglucosaminyltransferase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33184:SF44	BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN	coord: 19..83
IPR040361	Tapetum determinant 1	PANTHER	PTHR33184	PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED	coord: 19..83

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g05240	Moc11g05240	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g05240.1.exon2	Moc11g05240.1.exon2	exon
Moc11g05240.1.exon1	Moc11g05240.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g05240.1	cds.Moc11g05240.1_2	CDS
cds.Moc11g05240.1	cds.Moc11g05240.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g05240.1	Moc11g05240.1-protein	polypeptide