Moc11g01360.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g01360.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Nucleic acid-binding, OB-fold containing protein
Location	chr11: 886924 .. 888757 (-)
Sequence length	699
RNA-Seq Expression	Moc11g01360.1
Synteny	Moc11g01360.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGGACTGAAGGTTTCCGATGCCAATTTGGTCGTTTACGTTCACCCTTCCAAAAGTAAGAAGGTTTCGCAGGCGGTGCTGCGGGAGCTCGGCGCTATGCTTCTCAAGTAAGTAATTTCTTTTACAATTTTGGTATTTCTTGTCTCTATATCTCTTTCAATCACAAGCTTTTCCAGTTATTAATAGGGTATTGCTCTGTTCAGCATCTTGATTGTGGATACTGTCTGTTAATGGTAGAGTTGGATTGGAAAAAAAATTGATTTTGCCTTAGTTTGTTACTAAACTAGACCAGTTTGGCTTCAGTCGCCATTTTCATGAAGTGGGCATTTTTCTTTCTTCTGTATTAAAGAAATAATCACCTGGGTTACAACCCAGGTGATTGCTTCAGCTGTTAAGTTCATAAATGTCAGAATGTAAGTTCCTGTGGTTTTAAAGACTATAGCTCCCAAGATTTTAAGAAAATTTTCCCTTTAGGGAATGTAGATTTATTTCATTCTCTTTCAACTACTCAAAGCCACGGAGTTTAAGCTTCTTGTGAATGTCGTTGCTGCTTCTTTTGCTCCATTTAGTCGGTACTCAAGTTCATTGATGTGGTAGATAAATGTGAACTTGTATCAGTAACTGATTTTTTTATATTGTGTTCCTCATCTAGGTTTGATGAAAGATTTGAAGGCGTGCTACTGGCTTATGACGCCAAAATTACTGATAAAAGTGCAAAGATTCTATCTGGAGTGCATCCCTATTTTGGCGTGACACTAAAGGCAAAACTTTTGCTTTTCTCTCCAAAACCAAACATGCTTTTAGGTTGGTTTTCTACGATCCTCATAGTATGTGGAAGAGATTCATTTGAGATTTGAAGTATCTCCTTTGTTTTCCTAGGAAAGTATTTGCATCTACGATTAAGTTGTTAAGCACTTTTTAACGTCGTTATGATTCTTACTCGCATTATGATGGTCAGTAGATCAATAGGAGACAATCTTTTTTATTCCTTTTTACCATGCTTTGCTGATAGTTTTGTTATCACTTCAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCGGTCCATGTTATTGTCCTAGGTTTTGCTTCTGCTGCAATAACCGATGAAGACATTCGAGATGAATTCAAGCATAGAACAGTATGTTTCTTGCATTGTACTTGTAAGAAGGAAGTTCTATCATCTTTTCCTGATTCTATTATGCATTGATTTTGACTTAGAAACACGAGGAAGAAATGTTTGTCAGCAGAGCTCATAAGCACCATGTGATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGGTTAGGTTTTCCTTTCTTTAGTTATACTTATTTTGTAACATTTAAGTGGAAAATTGTTCATGGAGTTCTCGTTCAATTAATCAAGGTCTGGAACACCAAGCTTAGATCTTATGGATTGCCTGCAGTAGCTTGCTGATACTTGCTCTTCAGTTATCTAAATATCTTGATATTGTAATAACTGACTTAGTTCAACCTTGCAGTTTTGATGAGGAAATATTGCATATATCTGGATCGTTAGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCGATCGAGGGTTCAGTAACTGATAGGTGATTAGAAGATACTGAATCTGGGAGTTTTTAAGCTTTAATCCCCAAATCTATGATTCTGATTCTTTTCCCCCAATTTTTGTAGGAGAAGAAAGAAGACAAGAGACAACGAGGGAGAATCATTGTTGCAGGATAGTGTTGCTACCGATGTCAATGCACTTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAGAAAACTAGCAGAATATCTTGA

mRNA sequence

ATGGAGGGACTGAAGGTTTCCGATGCCAATTTGGTCGTTTACGTTCACCCTTCCAAAAGTAAGAAGGTTTCGCAGGCGGTGCTGCGGGAGCTCGGCGCTATGCTTCTCAAGTTTGATGAAAGATTTGAAGGCGTGCTACTGGCTTATGACGCCAAAATTACTGATAAAAGTGCAAAGATTCTATCTGGAGTGCATCCCTATTTTGGCGTGACACTAAAGGCAAAACTTTTGCTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCGGTCCATGTTATTGTCCTAGGTTTTGCTTCTGCTGCAATAACCGATGAAGACATTCGAGATGAATTCAAGCATAGAACAAAACACGAGGAAGAAATGTTTGTCAGCAGAGCTCATAAGCACCATGTGATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTGCATATATCTGGATCGTTAGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCGATCGAGGGTTCAGTAACTGATAGGAGAAGAAAGAAGACAAGAGACAACGAGGGAGAATCATTGTTGCAGGATAGTGTTGCTACCGATGTCAATGCACTTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAGAAAACTAGCAGAATATCTTGA

Coding sequence (CDS)

ATGGAGGGACTGAAGGTTTCCGATGCCAATTTGGTCGTTTACGTTCACCCTTCCAAAAGTAAGAAGGTTTCGCAGGCGGTGCTGCGGGAGCTCGGCGCTATGCTTCTCAAGTTTGATGAAAGATTTGAAGGCGTGCTACTGGCTTATGACGCCAAAATTACTGATAAAAGTGCAAAGATTCTATCTGGAGTGCATCCCTATTTTGGCGTGACACTAAAGGCAAAACTTTTGCTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTTAGGCAAGAATCGGTCCATGTTATTGTCCTAGGTTTTGCTTCTGCTGCAATAACCGATGAAGACATTCGAGATGAATTCAAGCATAGAACAAAACACGAGGAAGAAATGTTTGTCAGCAGAGCTCATAAGCACCATGTGATAAAGGTTGGGACAATGATACGATTTTTGGTGAAGAGTTTTGATGAGGAAATATTGCATATATCTGGATCGTTAGTTCCATCTCACACAGGGAGCATCCATTGGTTGGAGAAGAATTCGATCGAGGGTTCAGTAACTGATAGGAGAAGAAAGAAGACAAGAGACAACGAGGGAGAATCATTGTTGCAGGATAGTGTTGCTACCGATGTCAATGCACTTATCTTGAACAATGACCATCAGTCAAAAACCAAAAAGCAGAAAACTAGCAGAATATCTTGA

Protein sequence

MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKILSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEFKHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNSIEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS

Homology

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BLAST of Moc11g01360.1 vs. NCBI nr
Match: XP_022148351.1 (uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncharacterized protein LOC111016757 [Momordica charantia])

HSP 1 Score: 446.8 bits (1148), Expect = 1.1e-121
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 233
           IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Moc11g01360.1 vs. NCBI nr
Match: XP_022940043.1 (uncharacterized protein LOC111445794 isoform X1 [Cucurbita moschata] >XP_022940044.1 uncharacterized protein LOC111445794 isoform X1 [Cucurbita moschata])

HSP 1 Score: 415.2 bits (1066), Expect = 3.6e-112
Identity = 214/232 (92.24%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAY+A I DKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRA+KHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 233
           +EGSVT R RKKTRDN+ ESLLQDSVATDVNAL+LNNDHQSKTKKQKTSRIS
Sbjct: 181 VEGSVTSRSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Moc11g01360.1 vs. NCBI nr
Match: XP_023523351.1 (uncharacterized protein LOC111787571 [Cucurbita pepo subsp. pepo] >XP_023523353.1 uncharacterized protein LOC111787571 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 412.9 bits (1060), Expect = 1.8e-111
Identity = 213/232 (91.81%), Postives = 223/232 (96.12%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAY+A I DKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRA+KHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 233
           +EGSVT+R RKK RD + ESLLQDSVATDVNAL+LNNDHQSKTKKQKTSRIS
Sbjct: 181 VEGSVTNRSRKKMRDTDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Moc11g01360.1 vs. NCBI nr
Match: XP_022940045.1 (uncharacterized protein LOC111445794 isoform X2 [Cucurbita moschata])

HSP 1 Score: 411.0 bits (1055), Expect = 6.8e-111
Identity = 214/232 (92.24%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAY+A I DKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRA+KHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 233
           +EGSVT R RKKTRDN+ ESLLQDSVATDVNAL+LNNDHQSKTKKQKTSRIS
Sbjct: 181 VEGSVT-RSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 231

[Close]

BLAST of Moc11g01360.1 vs. NCBI nr
Match: KAG7037901.1 (rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 410.6 bits (1054), Expect = 8.9e-111
Identity = 214/232 (92.24%), Postives = 223/232 (96.12%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAY+A I DKSAKI
Sbjct: 35  MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 94

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIRDEF
Sbjct: 95  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRDEF 154

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRA+KHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 155 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 214

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 233
           +EGS T R RKKTRDN+ ESLLQDSVATDVNAL+LNNDHQSKTKKQKTSRIS
Sbjct: 215 VEGSET-RSRKKTRDNDKESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 265

[Close]

BLAST of Moc11g01360.1 vs. ExPASy Swiss-Prot
Match: O43036 (DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rpa43 PE=1 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06
Identity = 41/163 (25.15%), Postives = 82/163 (50.31%), Query Frame = 0


Query: 10  NLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYD-AKITDKSAKILSGVHPYF 69
           +L + + P  S+    A+   + +M+L    R  G++LAYD  +  +KSAK++    P+ 
Sbjct: 12  DLYLSIAPGHSRDPLNAIQEHMDSMILSKLPRINGIVLAYDNIRFLEKSAKVMYD-SPFS 71

Query: 70  GVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDI-RDEFKHRTKHE 129
            + ++  +L+FSPK    LEGK+  +    + +++LG  +A+I  + I +D         
Sbjct: 72  FIWVRVDVLVFSPKKGDCLEGKINLVSPSHIGLLILGIFNASIPRKSIPKDWIFIEPDTT 131

Query: 130 EEMFVSRAHKHHVIKVGTMIRFLVKSFDEE--ILHISGSLVPS 169
           EE    + +  ++++ G  + F+V     E  +  + G+L  S
Sbjct: 132 EEQGRWKTNDGNILEPGKDLEFVVDGIQREAGLTMVQGTLANS 173

[Close]

BLAST of Moc11g01360.1 vs. ExPASy TrEMBL
Match: A0A6J1D5Y9 (uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016757 PE=4 SV=1)

HSP 1 Score: 446.8 bits (1148), Expect = 5.5e-122
Identity = 232/232 (100.00%), Postives = 232/232 (100.00%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI
Sbjct: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF
Sbjct: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS
Sbjct: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 233
           IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS
Sbjct: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Moc11g01360.1 vs. ExPASy TrEMBL
Match: A0A6J1FN75 (uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.8e-112
Identity = 214/232 (92.24%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAY+A I DKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRA+KHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 233
           +EGSVT R RKKTRDN+ ESLLQDSVATDVNAL+LNNDHQSKTKKQKTSRIS
Sbjct: 181 VEGSVTSRSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 232

[Close]

BLAST of Moc11g01360.1 vs. ExPASy TrEMBL
Match: A0A6J1FPG3 (uncharacterized protein LOC111445794 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445794 PE=4 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 3.3e-111
Identity = 214/232 (92.24%), Postives = 224/232 (96.55%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAY+A I DKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRA+KHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRANKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQKTSRIS 233
           +EGSVT R RKKTRDN+ ESLLQDSVATDVNAL+LNNDHQSKTKKQKTSRIS
Sbjct: 181 VEGSVT-RSRKKTRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQKTSRIS 231

[Close]

BLAST of Moc11g01360.1 vs. ExPASy TrEMBL
Match: A0A6J1IWP0 (uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481277 PE=4 SV=1)

HSP 1 Score: 406.8 bits (1044), Expect = 6.3e-110
Identity = 208/227 (91.63%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLR+LGAMLLKFDERFEGVLLAY+A I DKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRDLGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRAHKHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQK 228
           +EGSVT+R RKK RDN+ ESLLQDSVATDVNAL+LNNDHQSKTKKQK
Sbjct: 181 VEGSVTNRSRKKMRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQK 227

[Close]

BLAST of Moc11g01360.1 vs. ExPASy TrEMBL
Match: A0A6J1J4W1 (uncharacterized protein LOC111481277 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481277 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 1.5e-108
Identity = 208/227 (91.63%), Postives = 218/227 (96.04%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLKVSDANLV+YVHPSKSKKVSQAVLR+LGAMLLKFDERFEGVLLAY+A I DKSAKI
Sbjct: 1   MEGLKVSDANLVIYVHPSKSKKVSQAVLRDLGAMLLKFDERFEGVLLAYEANIIDKSAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           LSGVHPYFGVT+KAKLLLFSPKPNMLLEGKVVKLRQES+HVIVLGFASA ITDEDIR+EF
Sbjct: 61  LSGVHPYFGVTIKAKLLLFSPKPNMLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           KHRTKH EEMFVSRAHKHHVIKVGTM+RFLVKSFDEEILHISGSLVPSHTGSIH LEKNS
Sbjct: 121 KHRTKHGEEMFVSRAHKHHVIKVGTMVRFLVKSFDEEILHISGSLVPSHTGSIHCLEKNS 180

Query: 181 IEGSVTDRRRKKTRDNEGESLLQDSVATDVNALILNNDHQSKTKKQK 228
           +EGSVT R RKK RDN+ ESLLQDSVATDVNAL+LNNDHQSKTKKQK
Sbjct: 181 VEGSVT-RSRKKMRDNDRESLLQDSVATDVNALLLNNDHQSKTKKQK 226

[Close]

BLAST of Moc11g01360.1 vs. TAIR 10
Match: AT1G75670.1 (DNA-directed RNA polymerases )

HSP 1 Score: 236.1 bits (601), Expect = 2.8e-62
Identity = 109/194 (56.19%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLK+S+A L++++HPS+S+ V Q + REL ++L +++E F+GVLLAYDA +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ES+HVIVLGF++A ITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           K+R +  E  FVSR+HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 IEGSVTDRRRKKTR 195
            E   TDR  K+ +
Sbjct: 181 EEALPTDRDHKRRK 194

[Close]

BLAST of Moc11g01360.1 vs. TAIR 10
Match: AT1G75670.2 (DNA-directed RNA polymerases )

HSP 1 Score: 236.1 bits (601), Expect = 2.8e-62
Identity = 109/194 (56.19%), Postives = 151/194 (77.84%), Query Frame = 0


Query: 1   MEGLKVSDANLVVYVHPSKSKKVSQAVLRELGAMLLKFDERFEGVLLAYDAKITDKSAKI 60
           MEGLK+S+A L++++HPS+S+ V Q + REL ++L +++E F+GVLLAYDA +  K AKI
Sbjct: 1   MEGLKLSEAELMIFIHPSQSRNVFQGICRELSSLLFQYNETFDGVLLAYDATVKSKQAKI 60

Query: 61  LSGVHPYFGVTLKAKLLLFSPKPNMLLEGKVVKLRQESVHVIVLGFASAAITDEDIRDEF 120
           L+G+HPYFGV +  +LLLF PKP   +EGK+VK+  ES+HVIVLGF++A ITD DIR+EF
Sbjct: 61  LTGLHPYFGVRVNTRLLLFDPKPKSFVEGKIVKISPESIHVIVLGFSAAVITDVDIREEF 120

Query: 121 KHRTKHEEEMFVSRAHKHHVIKVGTMIRFLVKSFDEEILHISGSLVPSHTGSIHWLEKNS 180
           K+R +  E  FVSR+HK H +K+GTM+R  V+SFDEE++HI+GSL+P +TG + WLEK S
Sbjct: 121 KYRVRDGEGSFVSRSHKRHALKLGTMLRLQVQSFDEEVMHIAGSLLPENTGCVKWLEKKS 180

Query: 181 IEGSVTDRRRKKTR 195
            E   TDR  K+ +
Sbjct: 181 EEALPTDRDHKRRK 194

The following BLAST results are available for this feature:

BLAST of Moc11g01360.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022148351.1	1.1e-121	100.00	uncharacterized protein LOC111016757 [Momordica charantia] >XP_022149084.1 uncha...	[more]
XP_022940043.1	3.6e-112	92.24	uncharacterized protein LOC111445794 isoform X1 [Cucurbita moschata] >XP_0229400...	[more]
XP_023523351.1	1.8e-111	91.81	uncharacterized protein LOC111787571 [Cucurbita pepo subsp. pepo] >XP_023523353....	[more]
XP_022940045.1	6.8e-111	92.24	uncharacterized protein LOC111445794 isoform X2 [Cucurbita moschata]	[more]
KAG7037901.1	8.9e-111	92.24	rpa43, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Moc11g01360.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O43036	1.3e-06	25.15	DNA-directed RNA polymerase I subunit rpa43 OS=Schizosaccharomyces pombe (strain...	[more]

BLAST of Moc11g01360.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5Y9	5.5e-122	100.00	uncharacterized protein LOC111016757 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1FN75	1.8e-112	92.24	uncharacterized protein LOC111445794 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1FPG3	3.3e-111	92.24	uncharacterized protein LOC111445794 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1IWP0	6.3e-110	91.63	uncharacterized protein LOC111481277 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1J4W1	1.5e-108	91.63	uncharacterized protein LOC111481277 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of Moc11g01360.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G75670.1	2.8e-62	56.19	DNA-directed RNA polymerases	[more]
AT1G75670.2	2.8e-62	56.19	DNA-directed RNA polymerases	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036898	RNA polymerase Rpb7-like, N-terminal domain superfamily	GENE3D	3.30.1490.120		coord: 2..83 e-value: 2.3E-6 score: 29.4
None	No IPR available	GENE3D	2.40.50.1060		coord: 86..232 e-value: 9.9E-7 score: 31.1
None	No IPR available	PANTHER	PTHR12709:SF5	DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA43	coord: 1..229
IPR045113	RNA polymerase Rpb7-like	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 1..229

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g01360	Moc11g01360	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g01360.1.exon6	Moc11g01360.1.exon6	exon
Moc11g01360.1.exon5	Moc11g01360.1.exon5	exon
Moc11g01360.1.exon4	Moc11g01360.1.exon4	exon
Moc11g01360.1.exon3	Moc11g01360.1.exon3	exon
Moc11g01360.1.exon2	Moc11g01360.1.exon2	exon
Moc11g01360.1.exon1	Moc11g01360.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g01360.1	cds.Moc11g01360.1_6	CDS
cds.Moc11g01360.1	cds.Moc11g01360.1_5	CDS
cds.Moc11g01360.1	cds.Moc11g01360.1_4	CDS
cds.Moc11g01360.1	cds.Moc11g01360.1_3	CDS
cds.Moc11g01360.1	cds.Moc11g01360.1_2	CDS
cds.Moc11g01360.1	cds.Moc11g01360.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g01360.1	Moc11g01360.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006352	DNA-templated transcription, initiation
cellular_component	GO:0005736	RNA polymerase I complex
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity