Moc11g01180.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc11g01180.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr11: 778487 .. 780183 (-)
Sequence length	870
RNA-Seq Expression	Moc11g01180.1
Synteny	Moc11g01180.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATTATTGATATTGATAATATTGATGATGTTGTTGGTGGTTTCACTGCGGATGAGTACGAGGTCGCCGACATCTTGGTCAACTTTCCTGCTTTAATATTCGACGGCGAGACTCGCCGGAATCGTCGGAAGCCCCCATTGTATTGGGGCGACAAGAAAATTAGATCTCCTCCGGCTCCGGTGGATAAATTACAGCTTCTTCACGATTCTACTCCACCGCCTTCGCTGGAAAATATGGCGGTGGACGCTCCTCCGACCACCGCAACAGGCTACGATCCCACCGGTTTGGCTCCTCCGCCCTTACCGCCCACTCAACCAGACCGGAAAGGACCCGAACGTTCGGATTCGAAGGCTAAAAGGGTAATCTCTCTTTCTCTTTCTCTCTCCTCTGGCTTTTGGTCATTAGGGTTTTGCTCACCACTGTTAAACTAATTTCTTTGTTGGTAGAAGGAAGAGTTGTTGCAGGAAATTCACGATCTCACCCACCACCAAAAATTAATGGAAACGGTGGGGGGTTTTTTTTTTTCCTTGTCCTCTGAGAAAAACATGATTGTATTTGATGATTATATCTGGTTCTTTATTTTTTTTCATTAAAAAAAAAAGACAAAAAAACTTATTTTTGTTGGAAATGGAGCATGAAACAGAATCTCGTTTTCATTTTATTTCTAAAATTTTTATACAATTTTAGAAAATTTTCTTGAGAGGATAGAACAAACTTTGGATGTCTAGAAAAATACAGCCAAGCTATGTTACCCCTTTTTTATTCAGTTTAACTATACCCACCATTAGATTCAGAATTAAAAGGTGGAATACTATTTCCAACCCAATGCAGAAGAGGGTAGAACAAGCTGACTAATAATTTTACACGGAAGAAAAATTAAAATCTGTATTTAAAATTTTCTTTAATAAACAGATATCCTTTTTTTTTTTCTTTTTTTTCTTTTTGGGGTGTTCTTATTGGTTTAACAAAATTTCCGTATGGGTCTCAAAATCCAAACAGAAACTGGAGAATTTGAGGCTTTATCGTGATAAAGCAAGAGAGCAGAAGGTATATGCGAGTTTTTTTTTTAATACATTAATATTCTTTCTATCGATATTCATCATTTCTTCAAATTGATTAGAAATAAGAGAATTAGCTTTATAAATTTTTGAAACTAGAATTCTTAGCACTCTCTTTTCTAATCTATTAATTAAAAATAAACTAAAATATATCAACATATTATTTTTGTGGTGGTCCACAGTTTATAAGTCGTGATATGAGAAGAGAAGAGGTGAATTTGACAATTGGATTAACAAGTTCAAATCCGCCGGTGGAAACAATCTCCAATGATCACTGCCACAGTCGGATCGTCAATCTTGATCCGATGGCGTCTCAAAGATCACAAAGGGAAGAGTTGCATTTGACGATTGGACTAGCAAGTTCAAATCCGCCGGTGGAAACAATCTCCGATGATCAGTACCGGATCCCGATCGTCAATGTTAATCACACGGCGGCTCAAAGATCGCAAATGTCACCGGTTATCCCCGATCTGAACGAAACTATTTGGCCGGAGAATAATAATGGAGCATTTGATGATCAGGCAGATTTTGGAAGCAATCGAATGACTATGGTGTACGAGGCGGCAGTGGCGAGACTGAGAAGGAGGCAGATCAACAAGATGAAGAAGTCCCGAGTTCCTCGTTTCTCTAGATAA

mRNA sequence

ATGAATATTATTGATATTGATAATATTGATGATGTTGTTGGTGGTTTCACTGCGGATGAGTACGAGGTCGCCGACATCTTGGTCAACTTTCCTGCTTTAATATTCGACGGCGAGACTCGCCGGAATCGTCGGAAGCCCCCATTGTATTGGGGCGACAAGAAAATTAGATCTCCTCCGGCTCCGGTGGATAAATTACAGCTTCTTCACGATTCTACTCCACCGCCTTCGCTGGAAAATATGGCGGTGGACGCTCCTCCGACCACCGCAACAGGCTACGATCCCACCGGTTTGGCTCCTCCGCCCTTACCGCCCACTCAACCAGACCGGAAAGGACCCGAACGTTCGGATTCGAAGGCTAAAAGGGTAATCTCTCTTTCTCTTTCTCTCTCCTCTGGCTTTTGGTCATTAGGGTTTTGCTCACCACTTCGTGATATGAGAAGAGAAGAGGTGAATTTGACAATTGGATTAACAAGTTCAAATCCGCCGGTGGAAACAATCTCCAATGATCACTGCCACAGTCGGATCGTCAATCTTGATCCGATGGCGTCTCAAAGATCACAAAGGGAAGAGTTGCATTTGACGATTGGACTAGCAAGTTCAAATCCGCCGGTGGAAACAATCTCCGATGATCAGTACCGGATCCCGATCGTCAATGTTAATCACACGGCGGCTCAAAGATCGCAAATGTCACCGGTTATCCCCGATCTGAACGAAACTATTTGGCCGGAGAATAATAATGGAGCATTTGATGATCAGGCAGATTTTGGAAGCAATCGAATGACTATGGTGTACGAGGCGGCAGTGGCGAGACTGAGAAGGAGGCAGATCAACAAGATGAAGAAGTCCCGAGTTCCTCGTTTCTCTAGATAA

Coding sequence (CDS)

ATGAATATTATTGATATTGATAATATTGATGATGTTGTTGGTGGTTTCACTGCGGATGAGTACGAGGTCGCCGACATCTTGGTCAACTTTCCTGCTTTAATATTCGACGGCGAGACTCGCCGGAATCGTCGGAAGCCCCCATTGTATTGGGGCGACAAGAAAATTAGATCTCCTCCGGCTCCGGTGGATAAATTACAGCTTCTTCACGATTCTACTCCACCGCCTTCGCTGGAAAATATGGCGGTGGACGCTCCTCCGACCACCGCAACAGGCTACGATCCCACCGGTTTGGCTCCTCCGCCCTTACCGCCCACTCAACCAGACCGGAAAGGACCCGAACGTTCGGATTCGAAGGCTAAAAGGGTAATCTCTCTTTCTCTTTCTCTCTCCTCTGGCTTTTGGTCATTAGGGTTTTGCTCACCACTTCGTGATATGAGAAGAGAAGAGGTGAATTTGACAATTGGATTAACAAGTTCAAATCCGCCGGTGGAAACAATCTCCAATGATCACTGCCACAGTCGGATCGTCAATCTTGATCCGATGGCGTCTCAAAGATCACAAAGGGAAGAGTTGCATTTGACGATTGGACTAGCAAGTTCAAATCCGCCGGTGGAAACAATCTCCGATGATCAGTACCGGATCCCGATCGTCAATGTTAATCACACGGCGGCTCAAAGATCGCAAATGTCACCGGTTATCCCCGATCTGAACGAAACTATTTGGCCGGAGAATAATAATGGAGCATTTGATGATCAGGCAGATTTTGGAAGCAATCGAATGACTATGGTGTACGAGGCGGCAGTGGCGAGACTGAGAAGGAGGCAGATCAACAAGATGAAGAAGTCCCGAGTTCCTCGTTTCTCTAGATAA

Protein sequence

MNIIDIDNIDDVVGGFTADEYEVADILVNFPALIFDGETRRNRRKPPLYWGDKKIRSPPAPVDKLQLLHDSTPPPSLENMAVDAPPTTATGYDPTGLAPPPLPPTQPDRKGPERSDSKAKRVISLSLSLSSGFWSLGFCSPLRDMRREEVNLTIGLTSSNPPVETISNDHCHSRIVNLDPMASQRSQREELHLTIGLASSNPPVETISDDQYRIPIVNVNHTAAQRSQMSPVIPDLNETIWPENNNGAFDDQADFGSNRMTMVYEAAVARLRRRQINKMKKSRVPRFSR

Homology

[Close]

BLAST of Moc11g01180.1 vs. NCBI nr
Match: XP_034676948.1 (uncharacterized protein LOC117907508 isoform X1 [Vitis riparia])

HSP 1 Score: 56.2 bits (134), Expect = 5.3e-04
Identity = 80/287 (27.87%), Postives = 123/287 (42.86%), Query Frame = 0


Query: 10  DDVVGGFTADEYEVADILVNFPALIFDGETRRNRRKPPLYWGDKKIRSPPAPVDKLQLLH 69
           D +   F  +E EV++IL+  P +IF  E  RNR   P  WG +K RS   P     L  
Sbjct: 10  DSLESFFDDNELEVSEILIQIPLIIFQAE-NRNRLLVP--WGVRKRRSAIDP----DLYQ 69

Query: 70  DSTPPPSLENMAVDAPPTTATGYDPTGLAPPPLPPTQPDRKGPERSDSKAKRVISLSLSL 129
            S P  S  ++       T    DP     PP P T P    P  +D K+KR      S+
Sbjct: 70  PSVPSSSSPHLPGTCVGPTCDDDDPQAKVEPPSPAT-PLSFSPSETDGKSKR---SKKSV 129

Query: 130 SSGFWSLGFCSPLRDMRREEVNLTIGLTSSNPPVETISNDHCHSRIVNLDPMASQRSQRE 189
           SS          + D+  ++ +L          +E +   +   + +N    +  +++++
Sbjct: 130 SSKKKKENLLKMVEDLTHQKESL-------KTEIENVERFYNQLKALN----SELKAKKQ 189

Query: 190 ELHLTIGLASSNPPVETISDDQYRIPIVNVNHTAAQRS-----QMSP-VIPDLN----ET 249
           +L+L   +  +   VE+   DQ++ P+  + H +A  S      M P VIPDLN    ET
Sbjct: 190 QLNLDTAITEAR--VESREQDQHQQPLPLLLHDSAPASALVANPMGPRVIPDLNVSPEET 249

Query: 250 IWPENNNGAFDDQADFGSNRMTMVYE---AAVARLRRRQINKMKKSR 284
           + PE    + D       N  T       AA AR +R QI K+KK +
Sbjct: 250 LGPE-LVASLDLNLSIALNADTTQLNRAAAAQARKKRLQIYKVKKPK 271

[Close]

BLAST of Moc11g01180.1 vs. NCBI nr
Match: XP_034676949.1 (uncharacterized protein LOC117907508 isoform X2 [Vitis riparia])

HSP 1 Score: 55.5 bits (132), Expect = 9.1e-04
Identity = 81/287 (28.22%), Postives = 123/287 (42.86%), Query Frame = 0


Query: 10  DDVVGGFTADEYEVADILVNFPALIFDGETRRNRRKPPLYWGDKKIRSPPAPVDKLQLLH 69
           D +   F  +E EV++IL+  P +IF  E  RNR   P  WG +K RS   P     L  
Sbjct: 10  DSLESFFDDNELEVSEILIQIPLIIFQAE-NRNRLLVP--WGVRKRRSAIDP----DLYQ 69

Query: 70  DSTPPPSLENMAVDAPPTTATGYDPTGLAPPPLPPTQPDRKGPERSDSKAKRVISLSLSL 129
            S P  S  ++       T    DP     PP P T P    P  +D K+KR      S+
Sbjct: 70  PSVPSSSSPHLPGTCVGPTCDDDDPQAKVEPPSPAT-PLSFSPSETDGKSKR---SKKSV 129

Query: 130 SSGFWSLGFCSPLRDMRREEVNLTIGLTSSNPPVETISNDHCHSRIVNLDPMASQRSQRE 189
           SS            ++ +   +LT    S    +E +   +   + +N    +  +++++
Sbjct: 130 SS--------KKKENLLKMVEDLTHQKESLKTEIENVERFYNQLKALN----SELKAKKQ 189

Query: 190 ELHLTIGLASSNPPVETISDDQYRIPIVNVNHTAAQRS-----QMSP-VIPDLN----ET 249
           +L+L   +  +   VE+   DQ++ P+  + H +A  S      M P VIPDLN    ET
Sbjct: 190 QLNLDTAITEAR--VESREQDQHQQPLPLLLHDSAPASALVANPMGPRVIPDLNVSPEET 249

Query: 250 IWPENNNGAFDDQADFGSNRMTMVYE---AAVARLRRRQINKMKKSR 284
           + PE    + D       N  T       AA AR +R QI K+KK +
Sbjct: 250 LGPE-LVASLDLNLSIALNADTTQLNRAAAAQARKKRLQIYKVKKPK 270

The following BLAST results are available for this feature:

BLAST of Moc11g01180.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_034676948.1	5.3e-04	27.87	uncharacterized protein LOC117907508 isoform X1 [Vitis riparia]	[more]
XP_034676949.1	9.1e-04	28.22	uncharacterized protein LOC117907508 isoform X2 [Vitis riparia]	[more]

BLAST of Moc11g01180.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g01180.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc11g01180.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..119

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc11g01180	Moc11g01180	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc11g01180.1.exon2	Moc11g01180.1.exon2	exon
Moc11g01180.1.exon1	Moc11g01180.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc11g01180.1	cds.Moc11g01180.1_2	CDS
cds.Moc11g01180.1	cds.Moc11g01180.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc11g01180.1	Moc11g01180.1-protein	polypeptide