Moc06g19660.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g19660.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr6: 15442884 .. 15443473 (-)
Sequence length	288
RNA-Seq Expression	Moc06g19660.1
Synteny	Moc06g19660.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAGGCCAATAGCCTCTTGGAGAACGCTCGACGTGAGTTGGAAACTGAGAAGAGAAAATCCCGAGATGAGCTTGCCAACCTGCAGAGGAGGCTTGATGAGGCCAACGCTCGACTCTCCAACTCTGAATTCTTGGCCGGAGAATTCAGGAAGACACAGGAGTATGTTTATTTACAGAATGCTGCCATGGAGTGTGGCGTCTCTTGATCTCTTCGCCAAGTTTCTACTGAGCATCCCAACATTGACTACTCCTTTCTCCAGGAGTGCTTTAAGGTCGAGTGTGATGCCCCCGACGACATGGATGATGATGATGATGAGTAGGAGGGTAGCGAGCCACTTTGTCTGTGTTGATCGCTTTTATGAACTAGTTGTTGTTATGTTGTTTTGTTTTCATTTATAGCTACCATTAGAATTATCAATCAATTCTCTAATACAAAAAATTATTGGCTTACGACTCTAACTCTGATGGAGCTGATTTTCGTTACCTTTACTTCTCATAGGCTTCTAACCCTTTGGCTATGGCCAATGGTTTTGTACCTTTAGTTGCTGTCGTTTGGCTTTTGATTTTGCTCCATCTTATGTTTTAA

mRNA sequence

ATGGACCAGGCCAATAGCCTCTTGGAGAACGCTCGACGTGAGTTGGAAACTGAGAAGAGAAAATCCCGAGATGAGCTTGCCAACCTGCAGAGGAGGCTTGATGAGGCCAACGCTCGACTCTCCAACTCTGAATTCTTGGCCGGAGAATTCAGGAAGACACAGGAGTATGTTTATTTACAGAATGCTGCCATGGAGTGTGGCGCTTCTAACCCTTTGGCTATGGCCAATGGTTTTGTACCTTTAGTTGCTGTCGTTTGGCTTTTGATTTTGCTCCATCTTATGTTTTAA

Coding sequence (CDS)

ATGGACCAGGCCAATAGCCTCTTGGAGAACGCTCGACGTGAGTTGGAAACTGAGAAGAGAAAATCCCGAGATGAGCTTGCCAACCTGCAGAGGAGGCTTGATGAGGCCAACGCTCGACTCTCCAACTCTGAATTCTTGGCCGGAGAATTCAGGAAGACACAGGAGTATGTTTATTTACAGAATGCTGCCATGGAGTGTGGCGCTTCTAACCCTTTGGCTATGGCCAATGGTTTTGTACCTTTAGTTGCTGTCGTTTGGCTTTTGATTTTGCTCCATCTTATGTTTTAA

Protein sequence

MDQANSLLENARRELETEKRKSRDELANLQRRLDEANARLSNSEFLAGEFRKTQEYVYLQNAAMECGASNPLAMANGFVPLVAVVWLLILLHLMF

Homology

[Close]

BLAST of Moc06g19660.1 vs. NCBI nr
Match: XP_022156747.1 (uncharacterized protein LOC111023586 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 4.8e-18
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1    MDQANSLLENARRELETEKRKSRDELANLQRRLDEANARLSNSEFLAGEFRKTQEYVYLQ 60
            ++QANSLLE  +R+LE EKRKSRDELANLQRRLDE NARL NSEFLA EF+KTQEYV LQ
Sbjct: 1150 LNQANSLLEGTQRKLEMEKRKSRDELANLQRRLDEVNARLFNSEFLAREFKKTQEYVDLQ 1209

Query: 61   NAAMECG 68
            N+AMECG
Sbjct: 1210 NSAMECG 1216

[Close]

BLAST of Moc06g19660.1 vs. NCBI nr
Match: XP_022147193.1 (uncharacterized protein LOC111016203 [Momordica charantia])

HSP 1 Score: 89.0 bits (219), Expect = 2.4e-14
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1   MDQANSLLENARRELETEKRKSRDELANLQRRLDEANARLSNSEFLAGEFRKTQEYVYLQ 60
           +DQAN LL N R +LE  K KS D+LA LQR+L+EAN RLSNS+FLA EF+KTQ+YV LQ
Sbjct: 136 LDQANMLLANVRHDLEVGKGKSGDDLAALQRKLNEANDRLSNSKFLAAEFKKTQDYVDLQ 195

Query: 61  NAAMECGAS 70
           NAAMECG S
Sbjct: 196 NAAMECGVS 204

[Close]

BLAST of Moc06g19660.1 vs. NCBI nr
Match: XP_022150031.1 (uncharacterized protein LOC111018304 [Momordica charantia])

HSP 1 Score: 67.0 bits (162), Expect = 9.9e-08
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MDQANSLLENARRELETEKRKSRDELANLQRRLDEANARLSNSEFLAGEFRKTQ 55
           ++QANS+L N + +LE E+R+SRD+L  LQ++LDEANA+LSNSEFLA +F+KTQ
Sbjct: 124 LNQANSMLANTQHDLEVERRRSRDDLVVLQKKLDEANAQLSNSEFLAEKFKKTQ 177

[Close]

BLAST of Moc06g19660.1 vs. ExPASy TrEMBL
Match: A0A6J1DSS1 (uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023586 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.3e-18
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1    MDQANSLLENARRELETEKRKSRDELANLQRRLDEANARLSNSEFLAGEFRKTQEYVYLQ 60
            ++QANSLLE  +R+LE EKRKSRDELANLQRRLDE NARL NSEFLA EF+KTQEYV LQ
Sbjct: 1150 LNQANSLLEGTQRKLEMEKRKSRDELANLQRRLDEVNARLFNSEFLAREFKKTQEYVDLQ 1209

Query: 61   NAAMECG 68
            N+AMECG
Sbjct: 1210 NSAMECG 1216

[Close]

BLAST of Moc06g19660.1 vs. ExPASy TrEMBL
Match: A0A6J1D0L6 (uncharacterized protein LOC111016203 OS=Momordica charantia OX=3673 GN=LOC111016203 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 48/69 (69.57%), Postives = 56/69 (81.16%), Query Frame = 0


Query: 1   MDQANSLLENARRELETEKRKSRDELANLQRRLDEANARLSNSEFLAGEFRKTQEYVYLQ 60
           +DQAN LL N R +LE  K KS D+LA LQR+L+EAN RLSNS+FLA EF+KTQ+YV LQ
Sbjct: 136 LDQANMLLANVRHDLEVGKGKSGDDLAALQRKLNEANDRLSNSKFLAAEFKKTQDYVDLQ 195

Query: 61  NAAMECGAS 70
           NAAMECG S
Sbjct: 196 NAAMECGVS 204

[Close]

BLAST of Moc06g19660.1 vs. ExPASy TrEMBL
Match: A0A6J1DA80 (uncharacterized protein LOC111018304 OS=Momordica charantia OX=3673 GN=LOC111018304 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 34/54 (62.96%), Postives = 47/54 (87.04%), Query Frame = 0


Query: 1   MDQANSLLENARRELETEKRKSRDELANLQRRLDEANARLSNSEFLAGEFRKTQ 55
           ++QANS+L N + +LE E+R+SRD+L  LQ++LDEANA+LSNSEFLA +F+KTQ
Sbjct: 124 LNQANSMLANTQHDLEVERRRSRDDLVVLQKKLDEANAQLSNSEFLAEKFKKTQ 177

The following BLAST results are available for this feature:

BLAST of Moc06g19660.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156747.1	4.8e-18	80.60	uncharacterized protein LOC111023586 [Momordica charantia]	[more]
XP_022147193.1	2.4e-14	69.57	uncharacterized protein LOC111016203 [Momordica charantia]	[more]
XP_022150031.1	9.9e-08	62.96	uncharacterized protein LOC111018304 [Momordica charantia]	[more]

BLAST of Moc06g19660.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g19660.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DSS1	2.3e-18	80.60	uncharacterized protein LOC111023586 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1D0L6	1.2e-14	69.57	uncharacterized protein LOC111016203 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]
A0A6J1DA80	4.8e-08	62.96	uncharacterized protein LOC111018304 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]

BLAST of Moc06g19660.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..24

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g19660	Moc06g19660	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g19660.1.exon2	Moc06g19660.1.exon2	exon
Moc06g19660.1.exon1	Moc06g19660.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g19660.1	cds.Moc06g19660.1_2	CDS
cds.Moc06g19660.1	cds.Moc06g19660.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g19660.1	Moc06g19660.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding