Moc06g18510.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g18510.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr6: 14457756 .. 14458471 (+)
Sequence length	570
RNA-Seq Expression	Moc06g18510.1
Synteny	Moc06g18510.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGCTCAATTCTGTTTTAACGGCCAGACAAGTTCTTCAACAGGAAAGAGCCCCTTTGAGATTGTGTGCGGAAGACAGCCGTCTATGCCACATATTCTTGACCACCCGTATGCGGGGAAAAGTCCTCAAGCCCACAACTTCACAAAGGAATGGAAGCAGACGACAGAAATTGCTCGAGCATATTTGGAGAAAGCTTCCAAGCATATGAAGAAATGAGCCGACCGCAAGAGACACCCTCTCGAATTTCGAGTAGGTGACAAAGTTCTTATCAAGCTGAGGCCAGAACAGATTCGTTTCCGAGGACGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCCGTGGAAGTCGTTAAGAAGGTGGGGAGTGTCTCGTATAAGGTGGTGTTACCCGCTTGGATGAAGATCCACCCGGTAATCCATGTGAGCAATTTAAAACCTTACCATCCCGACCTTGAGGATGACGAACGCAATGCTGTTGTGCGGCCCGCCATCGACTTCAAACGGAAGGAAGACAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGACCCGTTCGAAAAGTTCGAGAATTCCTCGTTAAATGGAAGGACCTACCCGATGCAGAGACCAGCTGGAAACGAGAAGAAGACCTTGAAGCCTGGAAGACGAAGATCGAGGACTTCAAGTTGCAGCAGTTGACAGGGACGTCAACCGTTTAA

mRNA sequence

ATGTGGCTCAATTCTGTTTTAACGGCCAGACAAGTTCTTCAACAGGAAAGAGCCCCTTTGAGATTGTGTGCGGAAGACAGCCGTCTATGCCACATATTCTTGACCACCCGTGACAAAGTTCTTATCAAGCTGAGGCCAGAACAGATTCGTTTCCGAGGACGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCCGTGGAAGTCGTTAAGAAGGTGGGGAGTGTCTCGTATAAGGTGGTGTTACCCGCTTGGATGAAGATCCACCCGGTAATCCATGTGAGCAATTTAAAACCTTACCATCCCGACCTTGAGGATGACGAACGCAATGCTGTTGTGCGGCCCGCCATCGACTTCAAACGGAAGGAAGACAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGACCCGTTCGAAAAGTTCGAGAATTCCTCGTTAAATGGAAGGACCTACCCGATGCAGAGACCAGCTGGAAACGAGAAGAAGACCTTGAAGCCTGGAAGACGAAGATCGAGGACTTCAAGTTGCAGCAGTTGACAGGGACGTCAACCGTTTAA

Coding sequence (CDS)

ATGTGGCTCAATTCTGTTTTAACGGCCAGACAAGTTCTTCAACAGGAAAGAGCCCCTTTGAGATTGTGTGCGGAAGACAGCCGTCTATGCCACATATTCTTGACCACCCGTGACAAAGTTCTTATCAAGCTGAGGCCAGAACAGATTCGTTTCCGAGGACGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCCGTGGAAGTCGTTAAGAAGGTGGGGAGTGTCTCGTATAAGGTGGTGTTACCCGCTTGGATGAAGATCCACCCGGTAATCCATGTGAGCAATTTAAAACCTTACCATCCCGACCTTGAGGATGACGAACGCAATGCTGTTGTGCGGCCCGCCATCGACTTCAAACGGAAGGAAGACAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGACCCGTTCGAAAAGTTCGAGAATTCCTCGTTAAATGGAAGGACCTACCCGATGCAGAGACCAGCTGGAAACGAGAAGAAGACCTTGAAGCCTGGAAGACGAAGATCGAGGACTTCAAGTTGCAGCAGTTGACAGGGACGTCAACCGTTTAA

Protein sequence

MWLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQQLTGTSTV

Homology

[Close]

BLAST of Moc06g18510.1 vs. NCBI nr
Match: KAA0063945.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 237.7 bits (605), Expect = 8.5e-59
Identity = 121/188 (64.36%), Postives = 145/188 (77.13%), Query Frame = 0


Query: 2   WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
           W  +   AR  L++    ++  A D +   +    RD+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 313 WKQTNDIARAYLEKASKQMKKWA-DKKRWPLEFRARDQVLIKLRPEQVRFRGRKDQRLVR 372

Query: 62  KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
           KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 373 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLSQ 432

Query: 122 KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
           KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 433 KEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 492

Query: 182 QLTGTSTV 190
           QLTGTST+
Sbjct: 493 QLTGTSTI 499

[Close]

BLAST of Moc06g18510.1 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 236.5 bits (602), Expect = 1.9e-58
Identity = 121/188 (64.36%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 2    WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
            W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 1401 WRQTNDIARAYLEKASKRMKKWADKKRR-PLEFRAGDQVLIKLRPEQVRFRGRKDQRLVR 1460

Query: 62   KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
            KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 1461 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPIIDLSQ 1520

Query: 122  KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
            KEDK+ EEILAER RK  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 1521 KEDKDVEEILAERVRKSRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 1580

Query: 182  QLTGTSTV 190
            QLTGTST+
Sbjct: 1581 QLTGTSTI 1587

[Close]

BLAST of Moc06g18510.1 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-58
Identity = 120/188 (63.83%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 2    WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
            W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 1397 WRQTNDIARAYLEKASKRMKKWADKKRR-PLEFRAGDQVLIKLRPEQVRFRGRKDQRLVR 1456

Query: 62   KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
            KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 1457 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQ 1516

Query: 122  KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
            KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 1517 KEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 1576

Query: 182  QLTGTSTV 190
            QLTGTST+
Sbjct: 1577 QLTGTSTI 1583

[Close]

BLAST of Moc06g18510.1 vs. NCBI nr
Match: TYK19637.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK28777.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-58
Identity = 120/188 (63.83%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 2   WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
           W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 73  WRQTNDIARAYLEKASKRMKKWADKKRR-PLEFRAGDQVLIKLRPEQVRFRGRKDQRLVR 132

Query: 62  KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
           KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 133 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQ 192

Query: 122 KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
           KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 193 KEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 252

Query: 182 QLTGTSTV 190
           QLTGTST+
Sbjct: 253 QLTGTSTI 259

[Close]

BLAST of Moc06g18510.1 vs. NCBI nr
Match: KAA0037220.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcriptase [Cucumis melo var. makuwa] >TYJ99001.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK01698.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK02882.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 235.3 bits (599), Expect = 4.2e-58
Identity = 120/188 (63.83%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 2    WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
            W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 1401 WRQTNDIARAYLEKASKRMKKWADKKRR-PLEFRAGDQVLIKLRPEQVRFRGRKDQRLVR 1460

Query: 62   KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
            KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 1461 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQ 1520

Query: 122  KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
            KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 1521 KEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 1580

Query: 182  QLTGTSTV 190
            QLTGTST+
Sbjct: 1581 QLTGTSTI 1587

[Close]

BLAST of Moc06g18510.1 vs. ExPASy TrEMBL
Match: A0A5A7VDI3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00910 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 4.1e-59
Identity = 121/188 (64.36%), Postives = 145/188 (77.13%), Query Frame = 0


Query: 2   WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
           W  +   AR  L++    ++  A D +   +    RD+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 313 WKQTNDIARAYLEKASKQMKKWA-DKKRWPLEFRARDQVLIKLRPEQVRFRGRKDQRLVR 372

Query: 62  KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
           KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 373 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNIVTRPIIDLSQ 432

Query: 122 KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
           KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 433 KEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 492

Query: 182 QLTGTSTV 190
           QLTGTST+
Sbjct: 493 QLTGTSTI 499

[Close]

BLAST of Moc06g18510.1 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 9.1e-59
Identity = 121/188 (64.36%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 2    WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
            W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 1401 WRQTNDIARAYLEKASKRMKKWADKKRR-PLEFRAGDQVLIKLRPEQVRFRGRKDQRLVR 1460

Query: 62   KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
            KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 1461 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPIIDLSQ 1520

Query: 122  KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
            KEDK+ EEILAER RK  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 1521 KEDKDVEEILAERVRKSRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 1580

Query: 182  QLTGTSTV 190
            QLTGTST+
Sbjct: 1581 QLTGTSTI 1587

[Close]

BLAST of Moc06g18510.1 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 120/188 (63.83%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 2    WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
            W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 1401 WRQTNDIARAYLEKASKRMKKWADKKRR-PLEFRAGDQVLIKLRPEQVRFRGRKDQRLVR 1460

Query: 62   KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
            KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 1461 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQ 1520

Query: 122  KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
            KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 1521 KEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 1580

Query: 182  QLTGTSTV 190
            QLTGTST+
Sbjct: 1581 QLTGTSTI 1587

[Close]

BLAST of Moc06g18510.1 vs. ExPASy TrEMBL
Match: A0A5D3DBE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00240 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 120/188 (63.83%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 2   WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
           W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 73  WRQTNDIARAYLEKASKRMKKWADKKRR-PLEFRAGDQVLIKLRPEQVRFRGRKDQRLVR 132

Query: 62  KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
           KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 133 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQ 192

Query: 122 KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
           KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 193 KEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 252

Query: 182 QLTGTSTV 190
           QLTGTST+
Sbjct: 253 QLTGTSTI 259

[Close]

BLAST of Moc06g18510.1 vs. ExPASy TrEMBL
Match: A0A5A7UXR6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G005550 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 2.0e-58
Identity = 120/188 (63.83%), Postives = 144/188 (76.60%), Query Frame = 0


Query: 2    WLNSVLTARQVLQQERAPLRLCAEDSRLCHIFLTTRDKVLIKLRPEQIRFRGRKDQRLVR 61
            W  +   AR  L++    ++  A+  R   +     D+VLIKLRPEQ+RFRGRKDQRLVR
Sbjct: 1401 WRQTNDIARAYLEKASKRMKKWADKKRR-PLEFRAGDQVLIKLRPEQVRFRGRKDQRLVR 1460

Query: 62   KYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKR 121
            KYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPYH D ED +RN V RP ID  +
Sbjct: 1461 KYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPYHQDTEDLQRNVVTRPTIDLSQ 1520

Query: 122  KEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWKREEDLEAWKTKIEDFKLQ 181
            KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ETSW+R EDLEAWK KIEDFKL+
Sbjct: 1521 KEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEETSWERVEDLEAWKQKIEDFKLR 1580

Query: 182  QLTGTSTV 190
            QLTGTST+
Sbjct: 1581 QLTGTSTI 1587

The following BLAST results are available for this feature:

BLAST of Moc06g18510.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063945.1	8.5e-59	64.36	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0032849.1	1.9e-58	64.36	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	4.2e-58	63.83	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19637.1	4.2e-58	63.83	reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcripta...	[more]
KAA0037220.1	4.2e-58	63.83	reverse transcriptase [Cucumis melo var. makuwa] >TYJ95897.1 reverse transcripta...	[more]

BLAST of Moc06g18510.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g18510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VDI3	4.1e-59	64.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold61...	[more]
A0A5A7SUK4	9.1e-59	64.36	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]
A0A5D3C4R1	2.0e-58	63.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3DBE0	2.0e-58	63.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]
A0A5A7UXR6	2.0e-58	63.83	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22...	[more]

BLAST of Moc06g18510.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 124..183 e-value: 2.0E-7 score: 40.7
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 125..189 score: 12.467001
None	No IPR available	GENE3D	2.40.50.40		coord: 120..186 e-value: 5.9E-11 score: 43.9
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 126..179 e-value: 3.1E-10 score: 39.8
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 86..181

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g18510	Moc06g18510	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g18510.1.exon1	Moc06g18510.1.exon1	exon
Moc06g18510.1.exon2	Moc06g18510.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g18510.1	cds.Moc06g18510.1	CDS
cds.Moc06g18510.1	cds.Moc06g18510.1_2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g18510.1	Moc06g18510.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity