Moc06g17970.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g17970.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Unknown protein
Location	chr6: 14067245 .. 14067904 (+)
Sequence length	660
RNA-Seq Expression	Moc06g17970.1
Synteny	Moc06g17970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAATTGAATACTAGACTAAAGAAAATAAGAGACGAGATTAAAGAACAGATCATGGAAGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATATTCAAGAACAAGTCACGGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGTGGACATTTCTCAACCTAAAAATTTAGTCAAGCCTCATGATAATTCATCACTTAGAGTGGACCCACCTCTTTGTCAATCAACAGAGGGCTTCCCCCAGCACAGTTCGTCACGTGAAGCTGAGTTGTCCAAGAAAGGCCAACAAGCTCCTACAAAATATCAGGTTGAATTCACATTCCAAGATGGACAAACATCAAAGGCCAATTATTCAGATAATTCAAAAGGTAAAGAAAAAGAAAATGTTACCAATAGAAATGCTGAAGAAACTACAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAACGGAACAACTGTCAATGCCTTTAATTAATAAAGAGCCATATCTTGAAGTGAATAGAAGCTATTTTAAAAGGAAAAATAAAGTCCAAGCAGTAATCTCGAAGTGCAAGTGGATGCACCAACAAGGATCTACGGTATACAATATTTCGTCTACAGTAACCATAAACTTATTGGCTTTGCAGTATGACCACAACTAA

mRNA sequence

ATGGAAGAATTGAATACTAGACTAAAGAAAATAAGAGACGAGATTAAAGAACAGATCATGGAAGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATATTCAAGAACAAGTCACGGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGTGGACATTTCTCAACCTAAAAATTTAGTCAAGCCTCATGATAATTCATCACTTAGAGTGGACCCACCTCTTTGTCAATCAACAGAGGGCTTCCCCCAGCACAGTTCGTCACGTGAAGCTGAGTTGTCCAAGAAAGGCCAACAAGCTCCTACAAAATATCAGGTTGAATTCACATTCCAAGATGGACAAACATCAAAGGCCAATTATTCAGATAATTCAAAAGGTAAAGAAAAAGAAAATGTTACCAATAGAAATGCTGAAGAAACTACAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAACGGAACAACTGTCAATGCCTTTAATTAATAAAGAGCCATATCTTGAAGTGAATAGAAGCTATTTTAAAAGGAAAAATAAAGTCCAAGCAGTAATCTCGAAGTGCAAGTGGATGCACCAACAAGGATCTACGGTATACAATATTTCGTCTACAGTAACCATAAACTTATTGGCTTTGCAGTATGACCACAACTAA

Coding sequence (CDS)

ATGGAAGAATTGAATACTAGACTAAAGAAAATAAGAGACGAGATTAAAGAACAGATCATGGAAGTGCAGAATGTAGAGCTAAAGAAGATGAGACAAGACATCGATAATATTCAAGAACAAGTCACGGAAATTTTCAATGTCTTAAAGAATATTGTTACAGTTGTGGACATTTCTCAACCTAAAAATTTAGTCAAGCCTCATGATAATTCATCACTTAGAGTGGACCCACCTCTTTGTCAATCAACAGAGGGCTTCCCCCAGCACAGTTCGTCACGTGAAGCTGAGTTGTCCAAGAAAGGCCAACAAGCTCCTACAAAATATCAGGTTGAATTCACATTCCAAGATGGACAAACATCAAAGGCCAATTATTCAGATAATTCAAAAGGTAAAGAAAAAGAAAATGTTACCAATAGAAATGCTGAAGAAACTACAGGGAAAGAATATGCTCAAAGATGGGGAGAAGCAACGGAACAACTGTCAATGCCTTTAATTAATAAAGAGCCATATCTTGAAGTGAATAGAAGCTATTTTAAAAGGAAAAATAAAGTCCAAGCAGTAATCTCGAAGTGCAAGTGGATGCACCAACAAGGATCTACGGTATACAATATTTCGTCTACAGTAACCATAAACTTATTGGCTTTGCAGTATGACCACAACTAA

Protein sequence

MEELNTRLKKIRDEIKEQIMEVQNVELKKMRQDIDNIQEQVTEIFNVLKNIVTVVDISQPKNLVKPHDNSSLRVDPPLCQSTEGFPQHSSSREAELSKKGQQAPTKYQVEFTFQDGQTSKANYSDNSKGKEKENVTNRNAEETTGKEYAQRWGEATEQLSMPLINKEPYLEVNRSYFKRKNKVQAVISKCKWMHQQGSTVYNISSTVTINLLALQYDHN

Homology

[Close]

BLAST of Moc06g17970.1 vs. NCBI nr
Match: XP_022153553.1 (uncharacterized protein LOC111021029 [Momordica charantia])

HSP 1 Score: 258.5 bits (659), Expect = 5.4e-65
Identity = 146/217 (67.28%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 1   MEELNTRLKKIRDEIKEQIMEVQNVELKKMRQDIDNIQEQVTEIFNVLKNIVTVVDISQP 60
           +EELN  LKKIRDEI+EQ+MEVQNVELKKMRQDIDNIQ+QV +I NVLKNIVTV   SQP
Sbjct: 20  IEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQVMKILNVLKNIVTVGGTSQP 79

Query: 61  KNLVKPHDNSSLRVDPPLCQSTEGFPQHSSSREAELSKKGQQAPTKYQVEFTFQDGQTSK 120
            NLV+P++NSS RVDPPLCQS EGFPQHSSS +A+LSKKGQQ PT  QVEFTF+D QT K
Sbjct: 80  NNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQQVPTNCQVEFTFKDEQTPK 139

Query: 121 ANYSDNSKGKEKENVTNRNAEETTGKEYAQRWGEATEQLSMPLINKEPYLEVNRSYFKRK 180
            NYSDN KG+EKENVT             QRWG+A EQL +PLINKEP+ ++N+S  KRK
Sbjct: 140 VNYSDNLKGEEKENVT-------------QRWGKAIEQLPVPLINKEPHPKMNKSSIKRK 199

Query: 181 NKVQAVISKCKWMHQQGSTVYNISSTVTINLLALQYD 218
           NKV AV+SK K  +QQG   Y+  STV IN + LQ D
Sbjct: 200 NKVLAVVSKRKRKYQQGFVAYS-PSTVPINSMTLQDD 222

[Close]

BLAST of Moc06g17970.1 vs. NCBI nr
Match: XP_022143515.1 (uncharacterized protein LOC111013388 [Momordica charantia])

HSP 1 Score: 104.0 bits (258), Expect = 1.7e-18
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MEELNTRLKKIRDEIKEQIMEVQNVELKKMRQDIDNIQEQVTEIFNVLKNIVTVVDISQP 60
           +EELN  LK+IRDEI+E + EV NVELKKMRQDID IQ QVT I NVLK IVTV DISQP
Sbjct: 65  IEELNXELKEIRDEIQEHVXEVHNVELKKMRQDIDKIQGQVTGILNVLKKIVTVGDISQP 124

Query: 61  KNLVKPHDNSSLRVDPPL 79
            NLV+PH+NSSLRV P L
Sbjct: 125 NNLVEPHNNSSLRVGPSL 142

[Close]

BLAST of Moc06g17970.1 vs. ExPASy TrEMBL
Match: A0A6J1DHS7 (uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021029 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 2.6e-65
Identity = 146/217 (67.28%), Postives = 168/217 (77.42%), Query Frame = 0


Query: 1   MEELNTRLKKIRDEIKEQIMEVQNVELKKMRQDIDNIQEQVTEIFNVLKNIVTVVDISQP 60
           +EELN  LKKIRDEI+EQ+MEVQNVELKKMRQDIDNIQ+QV +I NVLKNIVTV   SQP
Sbjct: 20  IEELNIELKKIRDEIQEQVMEVQNVELKKMRQDIDNIQKQVMKILNVLKNIVTVGGTSQP 79

Query: 61  KNLVKPHDNSSLRVDPPLCQSTEGFPQHSSSREAELSKKGQQAPTKYQVEFTFQDGQTSK 120
            NLV+P++NSS RVDPPLCQS EGFPQHSSS +A+LSKKGQQ PT  QVEFTF+D QT K
Sbjct: 80  NNLVEPYNNSSPRVDPPLCQSKEGFPQHSSSHDAQLSKKGQQVPTNCQVEFTFKDEQTPK 139

Query: 121 ANYSDNSKGKEKENVTNRNAEETTGKEYAQRWGEATEQLSMPLINKEPYLEVNRSYFKRK 180
            NYSDN KG+EKENVT             QRWG+A EQL +PLINKEP+ ++N+S  KRK
Sbjct: 140 VNYSDNLKGEEKENVT-------------QRWGKAIEQLPVPLINKEPHPKMNKSSIKRK 199

Query: 181 NKVQAVISKCKWMHQQGSTVYNISSTVTINLLALQYD 218
           NKV AV+SK K  +QQG   Y+  STV IN + LQ D
Sbjct: 200 NKVLAVVSKRKRKYQQGFVAYS-PSTVPINSMTLQDD 222

[Close]

BLAST of Moc06g17970.1 vs. ExPASy TrEMBL
Match: A0A6J1CP05 (uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013388 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 8.2e-19
Identity = 58/78 (74.36%), Postives = 64/78 (82.05%), Query Frame = 0


Query: 1   MEELNTRLKKIRDEIKEQIMEVQNVELKKMRQDIDNIQEQVTEIFNVLKNIVTVVDISQP 60
           +EELN  LK+IRDEI+E + EV NVELKKMRQDID IQ QVT I NVLK IVTV DISQP
Sbjct: 65  IEELNXELKEIRDEIQEHVXEVHNVELKKMRQDIDKIQGQVTGILNVLKKIVTVGDISQP 124

Query: 61  KNLVKPHDNSSLRVDPPL 79
            NLV+PH+NSSLRV P L
Sbjct: 125 NNLVEPHNNSSLRVGPSL 142

The following BLAST results are available for this feature:

BLAST of Moc06g17970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022153553.1	5.4e-65	67.28	uncharacterized protein LOC111021029 [Momordica charantia]	[more]
XP_022143515.1	1.7e-18	74.36	uncharacterized protein LOC111013388 [Momordica charantia]	[more]

BLAST of Moc06g17970.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g17970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DHS7	2.6e-65	67.28	uncharacterized protein LOC111021029 OS=Momordica charantia OX=3673 GN=LOC111021...	[more]
A0A6J1CP05	8.2e-19	74.36	uncharacterized protein LOC111013388 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]

BLAST of Moc06g17970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 1..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..103
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..145
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..103

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g17970	Moc06g17970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g17970.1.exon1	Moc06g17970.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g17970.1	cds.Moc06g17970.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g17970.1	Moc06g17970.1-protein	polypeptide