Moc06g17120.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g17120.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Reverse transcriptase
Location	chr6: 13420695 .. 13421324 (-)
Sequence length	630
RNA-Seq Expression	Moc06g17120.1
Synteny	Moc06g17120.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACATATTCTTGACCACCCGTATGCGGGGAAAAGTCCTCAAGCCCACAACTTCACAAAGGAATGGAAGCAGACGACAGAAATTGCTCGAGCATATTTGGAGAAAGCTTCCAAGCATATGAAGAAAGGGGCCGACCGCAAGAGACGCCCTCTCGAATTTCGAGTAGGCGACAAAGTTCTTATCAAGTTGAGGCCAGAACAGATTCGTTTCCGAGGATGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCCGTGGAAGTCGTTAAGAAGGTGGGGAGTGTCTCGTATAAGGTGGTGTTACCAGCTTGGATGAAGATTCACCCGGTGATCCACGTGAGCAATTTAAAACCTTACCACCCCGACCTTGAGGATGACGAACGCAATGCTGTTGTGCGGCCCGCCATTGACTTCAAACGGAAGGAAGACAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGACCCGTTCGAAAAGTTCGAGAATTCCTCGTCAAATGGAAGGACCTACCTGATGCAGAGACCAGCTGGGAACGAGAAGAAGACCTTGAAGCCTGGAAGACGAAGATCGAGCACTTCAAGCTGCAGCAGTTGACAGGGACGTCAACCGTTTAA

mRNA sequence

ATGCCACATATTCTTGACCACCCGTATGCGGGGAAAAGTCCTCAAGCCCACAACTTCACAAAGGAATGGAAGCAGACGACAGAAATTGCTCGAGCATATTTGGAGAAAGCTTCCAAGCATATGAAGAAAGGGGCCGACCGCAAGAGACGCCCTCTCGAATTTCGAGTAGGCGACAAAGTTCTTATCAAGTTGAGGCCAGAACAGATTCGTTTCCGAGGATGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCCGTGGAAGTCGTTAAGAAGGTGGGGAGTGTCTCGTATAAGGTGGTGTTACCAGCTTGGATGAAGATTCACCCGGTGATCCACGTGAGCAATTTAAAACCTTACCACCCCGACCTTGAGGATGACGAACGCAATGCTGTTGTGCGGCCCGCCATTGACTTCAAACGGAAGGAAGACAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGACCCGTTCGAAAAGTTCGAGAATTCCTCGTCAAATGGAAGGACCTACCTGATGCAGAGACCAGCTGGGAACGAGAAGAAGACCTTGAAGCCTGGAAGACGAAGATCGAGCACTTCAAGCTGCAGCAGTTGACAGGGACGTCAACCGTTTAA

Coding sequence (CDS)

ATGCCACATATTCTTGACCACCCGTATGCGGGGAAAAGTCCTCAAGCCCACAACTTCACAAAGGAATGGAAGCAGACGACAGAAATTGCTCGAGCATATTTGGAGAAAGCTTCCAAGCATATGAAGAAAGGGGCCGACCGCAAGAGACGCCCTCTCGAATTTCGAGTAGGCGACAAAGTTCTTATCAAGTTGAGGCCAGAACAGATTCGTTTCCGAGGATGCAAAGACCAGAGACTCGTGAGAAAGTACGAGGGACCCGTGGAAGTCGTTAAGAAGGTGGGGAGTGTCTCGTATAAGGTGGTGTTACCAGCTTGGATGAAGATTCACCCGGTGATCCACGTGAGCAATTTAAAACCTTACCACCCCGACCTTGAGGATGACGAACGCAATGCTGTTGTGCGGCCCGCCATTGACTTCAAACGGAAGGAAGACAAAGAAGCAGAAGAGATCCTTGCAGAGAGAACCAGAAAGGTGGGGAGACCCGTTCGAAAAGTTCGAGAATTCCTCGTCAAATGGAAGGACCTACCTGATGCAGAGACCAGCTGGGAACGAGAAGAAGACCTTGAAGCCTGGAAGACGAAGATCGAGCACTTCAAGCTGCAGCAGTTGACAGGGACGTCAACCGTTTAA

Protein sequence

MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKVLIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPYHPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAETSWEREEDLEAWKTKIEHFKLQQLTGTSTV

Homology

[Close]

BLAST of Moc06g17120.1 vs. NCBI nr
Match: KAA0032849.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 327.0 bits (837), Expect = 1.2e-85
Identity = 158/209 (75.60%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1    MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
            +PH++DHP+AGK+PQA NFTKEW+QT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 1379 LPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 1438

Query: 61   LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
            LIKLRPEQ+RFRG KDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPY
Sbjct: 1439 LIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPY 1498

Query: 121  HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
            H D ED +RN V RP ID  +KEDK+ EEILAER RK  RP R++ E+LVKWK+LP  ET
Sbjct: 1499 HQDTEDLQRNVVTRPIIDLSQKEDKDVEEILAERVRKSRRPARRIHEYLVKWKNLPVEET 1558

Query: 181  SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
            SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 1559 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 1587

[Close]

BLAST of Moc06g17120.1 vs. NCBI nr
Match: TYJ98540.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 326.6 bits (836), Expect = 1.5e-85
Identity = 158/209 (75.60%), Postives = 182/209 (87.08%), Query Frame = 0


Query: 1   MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
           +PH++DHP+AGK+PQA NFTKEWKQT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 51  LPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 110

Query: 61  LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
           LIKLRPEQ+RFRG KDQRLVRKYEGPV+V+KKVG+ SY+VVLP WMKI+PVIHVSNLKPY
Sbjct: 111 LIKLRPEQVRFRGRKDQRLVRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPY 170

Query: 121 HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
           H D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ET
Sbjct: 171 HQDTEDLQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEET 230

Query: 181 SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
           SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 231 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 259

[Close]

BLAST of Moc06g17120.1 vs. NCBI nr
Match: TYK05194.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 326.2 bits (835), Expect = 2.0e-85
Identity = 158/209 (75.60%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1   MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
           +PH++DHP+AGK+PQA NFTKEWKQT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 330 LPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 389

Query: 61  LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
           LIKLRPEQ+RFRG KDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPY
Sbjct: 390 LIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPY 449

Query: 121 HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
           H D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ET
Sbjct: 450 HQDTEDLQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEET 509

Query: 181 SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
           SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 510 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 538

[Close]

BLAST of Moc06g17120.1 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.6e-85
Identity = 157/209 (75.12%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1    MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
            +PH++DHP+AGK+PQA NFTKEW+QT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 1375 LPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 1434

Query: 61   LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
            LIKLRPEQ+RFRG KDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPY
Sbjct: 1435 LIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPY 1494

Query: 121  HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
            H D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ET
Sbjct: 1495 HQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEET 1554

Query: 181  SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
            SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 1555 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 1583

[Close]

BLAST of Moc06g17120.1 vs. NCBI nr
Match: TYK19637.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcriptase [Cucumis melo var. makuwa] >TYK28777.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 325.9 bits (834), Expect = 2.6e-85
Identity = 157/209 (75.12%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1   MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
           +PH++DHP+AGK+PQA NFTKEW+QT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 51  LPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 110

Query: 61  LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
           LIKLRPEQ+RFRG KDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPY
Sbjct: 111 LIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPY 170

Query: 121 HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
           H D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ET
Sbjct: 171 HQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEET 230

Query: 181 SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
           SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 231 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 259

[Close]

BLAST of Moc06g17120.1 vs. ExPASy TrEMBL
Match: A0A5A7SUK4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81G00100 PE=4 SV=1)

HSP 1 Score: 327.0 bits (837), Expect = 5.7e-86
Identity = 158/209 (75.60%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1    MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
            +PH++DHP+AGK+PQA NFTKEW+QT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 1379 LPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 1438

Query: 61   LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
            LIKLRPEQ+RFRG KDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPY
Sbjct: 1439 LIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPY 1498

Query: 121  HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
            H D ED +RN V RP ID  +KEDK+ EEILAER RK  RP R++ E+LVKWK+LP  ET
Sbjct: 1499 HQDTEDLQRNVVTRPIIDLSQKEDKDVEEILAERVRKSRRPARRIHEYLVKWKNLPVEET 1558

Query: 181  SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
            SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 1559 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 1587

[Close]

BLAST of Moc06g17120.1 vs. ExPASy TrEMBL
Match: A0A5D3BFH0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G001520 PE=4 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 7.4e-86
Identity = 158/209 (75.60%), Postives = 182/209 (87.08%), Query Frame = 0


Query: 1   MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
           +PH++DHP+AGK+PQA NFTKEWKQT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 51  LPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 110

Query: 61  LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
           LIKLRPEQ+RFRG KDQRLVRKYEGPV+V+KKVG+ SY+VVLP WMKI+PVIHVSNLKPY
Sbjct: 111 LIKLRPEQVRFRGRKDQRLVRKYEGPVQVLKKVGNTSYRVVLPTWMKIYPVIHVSNLKPY 170

Query: 121 HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
           H D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ET
Sbjct: 171 HQDTEDLQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPTRRIHEYLVKWKNLPVEET 230

Query: 181 SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
           SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 231 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 259

[Close]

BLAST of Moc06g17120.1 vs. ExPASy TrEMBL
Match: A0A5D3C1P3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00680 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 9.7e-86
Identity = 158/209 (75.60%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1   MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
           +PH++DHP+AGK+PQA NFTKEWKQT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 330 LPHLVDHPFAGKNPQALNFTKEWKQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 389

Query: 61  LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
           LIKLRPEQ+RFRG KDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPY
Sbjct: 390 LIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPY 449

Query: 121 HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
           H D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ET
Sbjct: 450 HQDTEDLQRNIVTRPIIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEET 509

Query: 181 SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
           SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 510 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 538

[Close]

BLAST of Moc06g17120.1 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.3e-85
Identity = 157/209 (75.12%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1    MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
            +PH++DHP+AGK+PQA NFTKEW+QT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 1379 LPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 1438

Query: 61   LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
            LIKLRPEQ+RFRG KDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPY
Sbjct: 1439 LIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPY 1498

Query: 121  HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
            H D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ET
Sbjct: 1499 HQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEET 1558

Query: 181  SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
            SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 1559 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 1587

[Close]

BLAST of Moc06g17120.1 vs. ExPASy TrEMBL
Match: A0A5D3DBE0 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00240 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.3e-85
Identity = 157/209 (75.12%), Postives = 181/209 (86.60%), Query Frame = 0


Query: 1   MPHILDHPYAGKSPQAHNFTKEWKQTTEIARAYLEKASKHMKKGADRKRRPLEFRVGDKV 60
           +PH++DHP+AGK+PQA NFTKEW+QT +IARAYLEKASK MKK AD+KRRPLEFR GD+V
Sbjct: 51  LPHLVDHPFAGKNPQALNFTKEWRQTNDIARAYLEKASKRMKKWADKKRRPLEFRAGDQV 110

Query: 61  LIKLRPEQIRFRGCKDQRLVRKYEGPVEVVKKVGSVSYKVVLPAWMKIHPVIHVSNLKPY 120
           LIKLRPEQ+RFRG KDQRLVRKYEGPVEV+KKVG+ SY+V LP WMKI+PVIHVSNLKPY
Sbjct: 111 LIKLRPEQVRFRGRKDQRLVRKYEGPVEVLKKVGNTSYRVALPTWMKIYPVIHVSNLKPY 170

Query: 121 HPDLEDDERNAVVRPAIDFKRKEDKEAEEILAERTRKVGRPVRKVREFLVKWKDLPDAET 180
           H D ED +RN V RP ID  +KEDK+ EEILAER R+  RP R++ E+LVKWK+LP  ET
Sbjct: 171 HQDTEDLQRNVVTRPTIDLSQKEDKDVEEILAERVRRGRRPARRIHEYLVKWKNLPVEET 230

Query: 181 SWEREEDLEAWKTKIEHFKLQQLTGTSTV 210
           SWER EDLEAWK KIE FKL+QLTGTST+
Sbjct: 231 SWERVEDLEAWKQKIEDFKLRQLTGTSTI 259

The following BLAST results are available for this feature:

BLAST of Moc06g17120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032849.1	1.2e-85	75.60	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYJ98540.1	1.5e-85	75.60	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK05194.1	2.0e-85	75.60	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	2.6e-85	75.12	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK19637.1	2.6e-85	75.12	reverse transcriptase [Cucumis melo var. makuwa] >TYK20902.1 reverse transcripta...	[more]

BLAST of Moc06g17120.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g17120.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SUK4	5.7e-86	75.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold81...	[more]
A0A5D3BFH0	7.4e-86	75.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold35...	[more]
A0A5D3C1P3	9.7e-86	75.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]
A0A5D3C4R1	1.3e-85	75.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5D3DBE0	1.3e-85	75.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]

BLAST of Moc06g17120.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000953	Chromo/chromo shadow domain	SMART	SM00298	chromo_7	coord: 144..203 e-value: 2.5E-8 score: 43.7
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 145..209 score: 13.118601
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 146..199 e-value: 1.4E-11 score: 44.1
None	No IPR available	GENE3D	2.40.50.40		coord: 129..203 e-value: 2.2E-11 score: 45.3
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 106..201

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g17120	Moc06g17120	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g17120.1.exon1	Moc06g17120.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g17120.1	cds.Moc06g17120.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g17120.1	Moc06g17120.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity