Moc06g12560.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc06g12560.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Ribonuclease H
Location	chr6: 9678507 .. 9678857 (+)
Sequence length	351
RNA-Seq Expression	Moc06g12560.1
Synteny	Moc06g12560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCTGACAGAGTAGAGCATTACGAGCCTTCGACAAATGAGGAAGAGTTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGGATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAATGGCATAGTCCGACCTGGGACGTACGTATTGGTCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

mRNA sequence

ATGCCATCTGACAGAGTAGAGCATTACGAGCCTTCGACAAATGAGGAAGAGTTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGGATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAATGGCATAGTCCGACCTGGGACGTACGTATTGGTCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

Coding sequence (CDS)

ATGCCATCTGACAGAGTAGAGCATTACGAGCCTTCGACAAATGAGGAAGAGTTGCTCCTCAACCTCGACTTGTTGGAAGAAAGAAGAGCAATGGCCCAGCTACGCCTGGCGGAATATCAGGGCAGGATGGCCAGACATTACAATGCCCGCGTTCGACCTCGGGCCTTTCAGGTCGGACATCTGGTCTTAAGGAGGGTCCAAACGCATGTGGGTGCCCTTGATCCGGCCTGGGAAGGCCCATTTGAGATCAATGGCATAGTCCGACCTGGGACGTACGTATTGGTCGATCTGAAAGGAGATGTCCTCGCGCACCCGTGGAACGCGGAACACCTGAAGCGTTATTATCCTTGA

Protein sequence

MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGHLVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYYP

Homology

[Close]

BLAST of Moc06g12560.1 vs. NCBI nr
Match: XP_022159003.1 (uncharacterized protein LOC111025448 [Momordica charantia])

HSP 1 Score: 181.4 bits (459), Expect = 4.4e-42
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+DR+E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGH
Sbjct: 514 MPTDRIEQYEPLRNEAELLLNLDLLEGKRETAQLRLVECQNRMARHYNTRIQPRSFQVGH 573

Query: 61  LVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYYP 117
           LV  ++Q+HVG LDP+WE  FE+ GIVRPGTY+L DL+  VLAHPWNAEHLKRYYP
Sbjct: 574 LVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVLAHPWNAEHLKRYYP 629

[Close]

BLAST of Moc06g12560.1 vs. NCBI nr
Match: XP_022156070.1 (uncharacterized protein K02A2.6-like [Momordica charantia])

HSP 1 Score: 157.5 bits (397), Expect = 6.8e-35
Identity = 72/105 (68.57%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP++RVE+YE   NEEELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+
Sbjct: 246 MPTERVEYYERVRNEEELLLYLDLIDEKREAAQLRLAEYQNQMARHYNSRVRSRSFQIGY 305

Query: 61  LVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHP 106
           LVLR+VQ HV  L+P+WEGPFE+ GIVRPGTY+L DL+G +L+HP
Sbjct: 306 LVLRKVQKHVEVLEPSWEGPFEVKGIVRPGTYMLADLEGKLLSHP 350

[Close]

BLAST of Moc06g12560.1 vs. NCBI nr
Match: XP_022156986.1 (uncharacterized protein LOC111023816 [Momordica charantia])

HSP 1 Score: 148.7 bits (374), Expect = 3.2e-32
Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+ RVE+++   N E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   
Sbjct: 730 MPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFKPSD 789

Query: 61  LVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYY 116
           LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L DL G  L HPWNAEHL+ YY
Sbjct: 790 LVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQLPHPWNAEHLRVYY 844

[Close]

BLAST of Moc06g12560.1 vs. NCBI nr
Match: XP_022156049.1 (uncharacterized protein LOC111023017 [Momordica charantia])

HSP 1 Score: 138.7 bits (348), Expect = 3.3e-29
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+ RVE+++  TN E  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R R F+ G 
Sbjct: 76  MPTLRVENFDGQTNSEAFLLNLDLLEEKRSYSQLKLAEYQNRMARYYNTRERVRTFKPGD 135

Query: 61  LVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYY 116
           L L++V  HV AL+P WEGP+ +  +VRP  Y+L DL G  L HPWNAE L+ YY
Sbjct: 136 LNLKKVMQHVEALEPNWEGPYRVLKVVRPRAYLLSDLNGRQLPHPWNAEPLRVYY 190

[Close]

BLAST of Moc06g12560.1 vs. NCBI nr
Match: GFS38896.1 (hypothetical protein Acr_00g0060030 [Actinidia rufa])

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1    MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
            MPS RV  +   TNE EL LNLDLLEERR  AQLR   Y+ ++A++YN RVR R+F  G 
Sbjct: 1203 MPSFRVSTFNKETNEAELRLNLDLLEERRESAQLRQTAYKCQVAKYYNQRVRHRSFLPGD 1262

Query: 61   LVLRRV-----QTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYY 116
            LVLR+V     + + G L P WEGP+++  + RPGTY L DL G  L+HPWNAEHLK+YY
Sbjct: 1263 LVLRKVTLSTKEPNAGKLGPTWEGPYKVIKVSRPGTYWLEDLDGKALSHPWNAEHLKKYY 1322

[Close]

BLAST of Moc06g12560.1 vs. ExPASy TrEMBL
Match: A0A6J1DXL9 (uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025448 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 2.1e-42
Identity = 83/116 (71.55%), Postives = 96/116 (82.76%), Query Frame = 0


Query: 1   MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+DR+E YEP  NE ELLLNLDLLE +R  AQLRL E Q RMARHYN R++PR+FQVGH
Sbjct: 514 MPTDRIEQYEPLRNEAELLLNLDLLEGKRETAQLRLVECQNRMARHYNTRIQPRSFQVGH 573

Query: 61  LVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYYP 117
           LV  ++Q+HVG LDP+WE  FE+ GIVRPGTY+L DL+  VLAHPWNAEHLKRYYP
Sbjct: 574 LVSSKIQSHVGTLDPSWEELFEVKGIVRPGTYMLADLERSVLAHPWNAEHLKRYYP 629

[Close]

BLAST of Moc06g12560.1 vs. ExPASy TrEMBL
Match: A0A6J1DP99 (uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023037 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 72/105 (68.57%), Postives = 91/105 (86.67%), Query Frame = 0


Query: 1   MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP++RVE+YE   NEEELLL LDL++E+R  AQLRLAEYQ +MARHYN+RVR R+FQ+G+
Sbjct: 246 MPTERVEYYERVRNEEELLLYLDLIDEKREAAQLRLAEYQNQMARHYNSRVRSRSFQIGY 305

Query: 61  LVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHP 106
           LVLR+VQ HV  L+P+WEGPFE+ GIVRPGTY+L DL+G +L+HP
Sbjct: 306 LVLRKVQKHVEVLEPSWEGPFEVKGIVRPGTYMLADLEGKLLSHP 350

[Close]

BLAST of Moc06g12560.1 vs. ExPASy TrEMBL
Match: A0A6J1DWM2 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.5e-32
Identity = 69/115 (60.00%), Postives = 88/115 (76.52%), Query Frame = 0


Query: 1   MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+ RVE+++   N E LL+NLDLLEE+R+ +QLRLAEYQ RMAR+YNARV+ R F+   
Sbjct: 730 MPTPRVENFDEQANSEALLVNLDLLEEKRSHSQLRLAEYQNRMARYYNARVKVRTFKPSD 789

Query: 61  LVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYY 116
           LVL++V  HVGAL+P WEGP+ +  I+RP  Y+L DL G  L HPWNAEHL+ YY
Sbjct: 790 LVLKKVMQHVGALEPNWEGPYRVLKILRPRAYLLSDLNGRQLPHPWNAEHLRVYY 844

[Close]

BLAST of Moc06g12560.1 vs. ExPASy TrEMBL
Match: A0A6J1DS38 (uncharacterized protein LOC111023017 OS=Momordica charantia OX=3673 GN=LOC111023017 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.6e-29
Identity = 66/115 (57.39%), Postives = 84/115 (73.04%), Query Frame = 0


Query: 1   MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
           MP+ RVE+++  TN E  LLNLDLLEE+R+ +QL+LAEYQ RMAR+YN R R R F+ G 
Sbjct: 76  MPTLRVENFDGQTNSEAFLLNLDLLEEKRSYSQLKLAEYQNRMARYYNTRERVRTFKPGD 135

Query: 61  LVLRRVQTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYY 116
           L L++V  HV AL+P WEGP+ +  +VRP  Y+L DL G  L HPWNAE L+ YY
Sbjct: 136 LNLKKVMQHVEALEPNWEGPYRVLKVVRPRAYLLSDLNGRQLPHPWNAEPLRVYY 190

[Close]

BLAST of Moc06g12560.1 vs. ExPASy TrEMBL
Match: A0A7J0DQA8 (Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_00g0060030 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 5.1e-28
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 0


Query: 1    MPSDRVEHYEPSTNEEELLLNLDLLEERRAMAQLRLAEYQGRMARHYNARVRPRAFQVGH 60
            MPS RV  +   TNE EL LNLDLLEERR  AQLR   Y+ ++A++YN RVR R+F  G 
Sbjct: 1203 MPSFRVSTFNKETNEAELRLNLDLLEERRESAQLRQTAYKCQVAKYYNQRVRHRSFLPGD 1262

Query: 61   LVLRRV-----QTHVGALDPAWEGPFEINGIVRPGTYVLVDLKGDVLAHPWNAEHLKRYY 116
            LVLR+V     + + G L P WEGP+++  + RPGTY L DL G  L+HPWNAEHLK+YY
Sbjct: 1263 LVLRKVTLSTKEPNAGKLGPTWEGPYKVIKVSRPGTYWLEDLDGKALSHPWNAEHLKKYY 1322

The following BLAST results are available for this feature:

BLAST of Moc06g12560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022159003.1	4.4e-42	71.55	uncharacterized protein LOC111025448 [Momordica charantia]	[more]
XP_022156070.1	6.8e-35	68.57	uncharacterized protein K02A2.6-like [Momordica charantia]	[more]
XP_022156986.1	3.2e-32	60.00	uncharacterized protein LOC111023816 [Momordica charantia]	[more]
XP_022156049.1	3.3e-29	57.39	uncharacterized protein LOC111023017 [Momordica charantia]	[more]
GFS38896.1	1.1e-27	55.83	hypothetical protein Acr_00g0060030 [Actinidia rufa]	[more]

BLAST of Moc06g12560.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc06g12560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DXL9	2.1e-42	71.55	uncharacterized protein LOC111025448 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1DP99	3.3e-35	68.57	uncharacterized protein K02A2.6-like OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DWM2	1.5e-32	60.00	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111023816 PE=4 SV=1	[more]
A0A6J1DS38	1.6e-29	57.39	uncharacterized protein LOC111023017 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A7J0DQA8	5.1e-28	55.83	Ribonuclease H OS=Actinidia rufa OX=165716 GN=Acr_00g0060030 PE=4 SV=1	[more]

BLAST of Moc06g12560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 15..42

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc06g12560	Moc06g12560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc06g12560.1.exon1	Moc06g12560.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc06g12560.1	cds.Moc06g12560.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc06g12560.1	Moc06g12560.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding