Moc05g22900.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc05g22900.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	extensin-like
Location	chr5: 16399795 .. 16400461 (-)
Sequence length	456
RNA-Seq Expression	Moc05g22900.1
Synteny	Moc05g22900.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAATAATCAAACAAAAGGCGAATAGGAAGAGAGCGCTGAAGCTAGAACTCTCAGCAAGTTCTAGGTCGAGCGGCGACTTCAAGGAGACCGCTAAAACCATTCCACCGGAGGCCTCTGATGAGCAGAACCCTGCCCAGCAAAGCCCCATCAGTTCGGAGCACACTCCGGCTAAAACTGAGCTTCCGCCGCCGCCTCCTCCTGTCACTAGCCCTCAGGTAAACGCCCCTGACCCTACTGCCTCCTCTTTCCAAACCCAGCCTGAGAAGCCCTTACCCATCGGCGAAAACTCGAAAAAGCTTGCTCCTCCTCCTCCTCTCACAAGGACAAGTTGGTGATAGATAGGAGTTCAGTGGAAAGACTAATGAACCAGGACCCTACTCGTCGTGGAGCTGTGAAGAATGTAGCCATCAATGAAATGATGGCCCAGCTCGCAAAAATGCAAAAGCAGCTCTCACGAATGGAGGAGGCGTAGTCTGCATCTGCTGAGAAGGCGAAGAAAAGATATGCGAGTATCCTGGCAGCGCTGGAGCATTTTAAAGCAGCAGCCCCATCCTCATCCGCTATGTCGGCCCGTCTGAAGGAATTGTTGGAGACTCCGGAAGTTTTGAAGAGGAAGATCAACCTATGGGCGACTCTTTAGAGAAAGAAGAAAGTTCTGCTTGA

mRNA sequence

ATGCCAATAATCAAACAAAAGGCGAATAGGAAGAGAGCGCTGAAGCTAGAACTCTCAGCAAGTTCTAGGTCGAGCGGCGACTTCAAGGAGACCGCTAAAACCATTCCACCGGAGGCCTCTGATGAGCAGAACCCTGCCCAGCAAAGCCCCATCAGTTCGGAGCACACTCCGGCTAAAACTGAGCTTCCGCCGCCGCCTCCTCCTGTCACTAGCCCTCAGGTAAACGCCCCTGACCCTACTGCCTCCTCTTTCCAAACCCAGCCTGAGAAGCCCTTACCCATCGGCGAAAACTCGAAAAAGCTTGCTCCTCCTCCTCCTCTCACAAGGACAAGTTGCAGCCCCATCCTCATCCGCTATGTCGGCCCGTCTGAAGGAATTGTTGGAGACTCCGGAAGTTTTGAAGAGGAAGATCAACCTATGGGCGACTCTTTAGAGAAAGAAGAAAGTTCTGCTTGA

Coding sequence (CDS)

ATGCCAATAATCAAACAAAAGGCGAATAGGAAGAGAGCGCTGAAGCTAGAACTCTCAGCAAGTTCTAGGTCGAGCGGCGACTTCAAGGAGACCGCTAAAACCATTCCACCGGAGGCCTCTGATGAGCAGAACCCTGCCCAGCAAAGCCCCATCAGTTCGGAGCACACTCCGGCTAAAACTGAGCTTCCGCCGCCGCCTCCTCCTGTCACTAGCCCTCAGGTAAACGCCCCTGACCCTACTGCCTCCTCTTTCCAAACCCAGCCTGAGAAGCCCTTACCCATCGGCGAAAACTCGAAAAAGCTTGCTCCTCCTCCTCCTCTCACAAGGACAAGTTGCAGCCCCATCCTCATCCGCTATGTCGGCCCGTCTGAAGGAATTGTTGGAGACTCCGGAAGTTTTGAAGAGGAAGATCAACCTATGGGCGACTCTTTAGAGAAAGAAGAAAGTTCTGCTTGA

Protein sequence

MPIIKQKANRKRALKLELSASSRSSGDFKETAKTIPPEASDEQNPAQQSPISSEHTPAKTELPPPPPPVTSPQVNAPDPTASSFQTQPEKPLPIGENSKKLAPPPPLTRTSCSPILIRYVGPSEGIVGDSGSFEEEDQPMGDSLEKEESSA

Homology

[Close]

BLAST of Moc05g22900.1 vs. NCBI nr
Match: XP_022154805.1 (extensin-like [Momordica charantia])

HSP 1 Score: 85.5 bits (210), Expect = 4.3e-13
Identity = 58/106 (54.72%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MPIIKQKANRKRALKLELSASSRSSGDFKETAKTIPPEASDEQNPAQQSPISSEHTPAKT 60
           MP IK +ANRKR LKLELSASS S+GDFKE A+TIP EA +E     QSP SSEHTP + 
Sbjct: 1   MPRIKHRANRKRTLKLELSASSGSNGDFKEAAETIPSEAIEE-----QSPTSSEHTPTEA 60

Query: 61  ELPPPPPPVTSPQVNAPDPTASSFQTQPEKPLPIGENSKKLAPPPP 107
           E+ PPPPPV SPQ     P  S     P K +     + K+  PPP
Sbjct: 61  EILPPPPPVASPQTKR--PAQSVLSPSPTKKI----KTPKVPQPPP 95

[Close]

BLAST of Moc05g22900.1 vs. ExPASy TrEMBL
Match: A0A6J1DKP0 (extensin-like OS=Momordica charantia OX=3673 GN=LOC111021971 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.1e-13
Identity = 58/106 (54.72%), Postives = 67/106 (63.21%), Query Frame = 0


Query: 1   MPIIKQKANRKRALKLELSASSRSSGDFKETAKTIPPEASDEQNPAQQSPISSEHTPAKT 60
           MP IK +ANRKR LKLELSASS S+GDFKE A+TIP EA +E     QSP SSEHTP + 
Sbjct: 1   MPRIKHRANRKRTLKLELSASSGSNGDFKEAAETIPSEAIEE-----QSPTSSEHTPTEA 60

Query: 61  ELPPPPPPVTSPQVNAPDPTASSFQTQPEKPLPIGENSKKLAPPPP 107
           E+ PPPPPV SPQ     P  S     P K +     + K+  PPP
Sbjct: 61  EILPPPPPVASPQTKR--PAQSVLSPSPTKKI----KTPKVPQPPP 95

The following BLAST results are available for this feature:

BLAST of Moc05g22900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154805.1	4.3e-13	54.72	extensin-like [Momordica charantia]	[more]

BLAST of Moc05g22900.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc05g22900.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DKP0	2.1e-13	54.72	extensin-like OS=Momordica charantia OX=3673 GN=LOC111021971 PE=4 SV=1	[more]

BLAST of Moc05g22900.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 141..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 75..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..56

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc05g22900	Moc05g22900	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc05g22900.1.exon2	Moc05g22900.1.exon2	exon
Moc05g22900.1.exon1	Moc05g22900.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc05g22900.1	cds.Moc05g22900.1_2	CDS
cds.Moc05g22900.1	cds.Moc05g22900.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc05g22900.1	Moc05g22900.1-protein	polypeptide