Moc03g20790.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc03g20790.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	PsbP domain-containing protein 6
Location	chr3: 14175898 .. 14180594 (+)
Sequence length	894
RNA-Seq Expression	Moc03g20790.1
Synteny	Moc03g20790.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCAGCCTCTGCATTTACATTCCCTCCATCATTTCCGAGCTCCACCTGTCGGAAACCTAAGAGGAAAGCCATTTCTCCGGCGATCTTCTGTCGAAGGTCTTCCCAATTCGGCCTCCGGCGGGAAATTTTGAAAGGGTTGTCGCTGTTTCCTCTTTCGCTCCCTCTTTTCGAATCGATAATTCCACTTCCTTCTGAATCGAAGGAGGTCGAAGTTGGCTCCTATCTCCCGCCCTCACAGTCAGACCCTTCTTTTGTGTTCTTCAAAGCTTCCCCATCCGACACCCCGGCTCTTCGTGCAGGTATTATGACTTATTTCTGTATTGTTCTTCCAATAATCGAATTGGGAATGGGGGCAATGCGTGTTTTTCAGAACTCAGTTTTAGTTTGTGGAGCTAAGTGTTCAACTATTTTGAGAAGGCGCAAACCGAAATTGCGCAAGGGGATTCTTTAAGTTTCTTGGCCGGAAATAATTTTATAATGTTCCGTTTCGCTCATGATTGATTCTTCGGCTTGCCTTCGAGGTTCAAACTCGAATTGTGAACCGATCGAGAGAATCCAAGACTTTTTGGTTGATTGTAGTGGTTAATTGCTCATCTGAACTTAGTTGGAAAGCTGTCTGTGAGATTTGGTTGTTGATCAGTTTAGCATCCATAACTTTGAGGTGGTTTATGTTTATGGCATAGCTAACAGTAGTTACTCCTTGAATTAGTTAGTTCATTTGAGAACTGGTGTTTTAGTTTGCATTAGTTGAGTTAGCAAGGGTGTGAGAAAGTTCTTTAAAAATTGAAGCGGAGTGAACTTTAATCTTGGGGGTGTGTTCTTGAGTCTTATAGCGAGTTCTCTGGTTGGATGTAGGGATGGCTGAGGAAGAAATAATGGGGCAACTGCCCCTTCTTAGTTCACCTTAGATTAAGAAAATAAAAGAAAAATGTTGAGATTTTAAAGTTCTCTCTAGTTTCACATGCACTAAAATTTATAGAATTGGTAGATTATAGGTAAAAAAAGGTTAAAATGTAAAATGTTGCCACTTCCCGAGAAAATTTATGGTTTACCCCTGGTTAGATGTAAAAATAAAATGTTGTCCAAGACTTGAAAAGTTCTCTCCAAATGATATGACATCTCTATTGTTTAACGAACTTAGGATGGTACATGAAGATATCTTTTTGGTAGATTGTTTATTGTCCCAGTAGAAGTGTAGAACTGTATAGATAGAGGCTCTCAAGGGCTAAAAAAAGAACCAAACACCATTAGTTTCCATGAGTTTAAAAATTTCCTGAGGATTCTGAAGATCAGACTGGCTGTGAACTCATTATGTCGATTACGTATTGTTATGCCACCTGAGATCTATGCAAGGTTAAATGAATTCATTTCAACCATATCTATCCTAAGAAGTAGAAACAATAGATCCTTCCCACTGAGACAAATGCAAATAGGTTTTAGATAATGGTGAGAGGTTACCACTAGTTTTTCTGTTAGTTTCAGTTGTGAGAGATTGCATCCAATTATATACTTTTGTTACCTTGATGTATTACTATGCATTTTGCATCTGAAATTAAGAAAGCACTTGCTATATAGGATAGATGCACGAAGCATATTATTGGTTATATTTTTCTTTATTGTCACCATCTTCTAAGTTGTTAAATGTTACATGCTAATGATACTTGAGATTTAGTTCTTCGCAGGAAATGTGCAACCATACCAATTCATTCTGCCCCCAACTTGGAAACAAACTCGTGTAGCAAATATTTTATCTGGTAATTACTGTCAACCGAAGTGTGCAGAGCCATGGGTAGAGGTAAAATTTGAAGATGACAAACAAGGGAAAATCCAGGTAGTGGCTTCCCCTTTGATTCGTCTTACTAATAAGCCTAATGCTACAATTGAAGACATAGGTAGCCCTGAGAAGGTGATCGCTTCGCTTGGCCCTTTCGTTACTGGAAATTCATACGACCCAGAAGAGCTCCTTGAAGCATCAGTTGAGAAACTCGGTGATCAGACGGTATGATCCTCTCGTGACTCGTAGATTCTAATTTTTTGTTTTATAAATAATCCTTCTTTGAGTACAATAAAGCTGTAGATATAACTTGGAGATGTGAGATTTGCGTACTCCCACTCTAGTATAGCATAGGTTAAGTAATACTTTTAATTCCTATACTTTAACCTAAGATTTATTTTACTCCTTGTGCTTTTAAAAGCTTTGTTATCATCCCTGCTTACCTGATGTCCCTACCATTAGCAAGACATAACAAAAACCCAATGTGAGTAGTTATTTGTAGTTGTGCTCTAAAACGAGTCATAGAAAACAAATATATGTTAGTTATGTTATTGCACTCCAAAACGAGATTAGCCAGCCCTTTCAACTTTTTAATCAAAATAATGTTTATGTTAGAGAATATGACCCGATCTCTATTACTCCTCTCAAGGACATCTAGCAAGCTTTAATCAAAATACAAGAATGATAAGAAAACTTTTAAAACCATATCAACCAAAGTTGAAACTTAAATTAAAGCTAAGAACTAAATTATTTTAACCAATAGTATATAGCGGATTCTGTCGGGAAAAAAAAAGTATATATGTAGCGGATTCTTTTGGTTTAGATTTATGTGCCTAGTTCCTTCATAAGTACATCCCCAATTTAGATCAACTTCATTTGAACTCTTGCTGAACTATCTATCTAGCTAGGACTCCACTTCTTCCATAGCAGCTTTGAAGCTTGCATGTGGCTGCCATCATTCTAACTTCTAACATTTCTCAGTTTCTCTTAGTGAAACTGAAGATAGTTAAGGCATTGTTGGTCATTTGATAACGGTTTCATTTGTAGTTTTTTTTGTTTTGAAAAATTTGTGCTTGTTTTCTCACCATTTCTTTAGTATGCTTTTTCTCCTTTATTAAAAATTACGTTTGAATTCTGAGTTAAAATTCAGAAGCAAGTAGGTAATAAGACTTGCAAAACCACATAGGAACTATAAATATAGTTATCAAATAGGTCTAAGTTACTTTTAGGTGCATTGTGTTACATATCAGTTTCAGAAGTTTGATGGTAAAAACTTATTAGAGCGTTGTTTTACGACGTTTATGCAGTACTACAAATACACACTTGAGACTCCCTATGCTCTGACGGGGACACACAATCTAGCTAAGGCAACGGCAAAAGGAAGCACAGTTGTCTTGTTTGTGGCTAGTGCAAATGATAAACAATGGCCGGCATCTGAGAAAATTCTGAGAACCATGCTCGATTCTTTCCAGCTGTAATTTCTCAACACAAATTGCAATTGAGATTATATTTGATAGTATATGTTCTGGAGAAAATTCTTCGCTTCACAGATACTGAAGAATGAATATATATTGAGTTTAGCATTCCTGTTGCGGAATATCATTCTTTGACATTCTTAGTAAAACAAAAAATCTAGAAGATCTCATTTATTATTATTATTATTTTTTTAAATAATGGGAGCAGAGCTTTCCTCTCATATACTTAAGAAGGGAGTCCGTGTCTGTCCGGATTGAGAGGCATCAAGAATTTTTGGTATTAAGCTCATCGGGAGGTTTGAAGACTTCTAAGTTAGACACATTAATAGTTTTTAAAGATCATTTTAATAGTATAGATCTAATACTTATTATAAATGTATCATACACTTGTTAATTATAATAAATATACTTTTTTTTAATATCCATGAGTGTTCTATGGGTGCATCTCTCTCACGGGTTAACTGTTTGACCCTAATTTATTCTTAGGTAGGTAGTTATCGTGAGATTTGAATCCCTTTCCTCTAAATCCTTATGATTTAACTCGACCCTTTTGAACCAATGAGTCATTGGTAAAACATAATAAATAGACATAATAATAATATATGTAGTCATAATAATAAAATATGAGGACAAAATGCAGCACACACATTTTTTTAAGCATCAAGATTTTTAAACTTATTAACTTAACATTACCTTCAAGTTAAAAATGCTATATACTTAAAAAAAAATTGTATATTTCAATAAACGCGTCTTTGGCGTATCCGTGTTTTTTATAAAATGGCATGTCATTGTGTTTGTGTTGTGTCATATTTGTATCTTGTTTTCGTAGCTTATGAGACTAATTGAAAGCTGAATTGATTAAGGACTTGATCAATAAAAATCAACCTACAAAAATGAACACTTGACAATTTTTATAAATTAAGGACAGGAATTGAGAAAACCAATACATTAAATGTAAAATTGATATTTTGTATAAATTAAGGATACAATTGAAATTTTGTTAACAGATTAGAGATTAATTTATATATAAAGCCATTGTTATATAACTACAACACTTGTGATGCCATTTTTACCTATGTTTGCTAAAATCTAAGACTTCATTTGAAAGCGATTTTAAGTTTTATTTTAACGGTCATGATTCAAATCTTAACCAACTTGAAAAACAAAATCTTGGTTTTTTAAAATTAATTTGTTTTAATTTTAAATATTTGTTCAGGATTAAATTTTTTTTTAATTTAATTTCCTTTGAGTAGGAGATTGGAACTCACAGCCTCCTAGATATTCGACCGGCCGTCCGCCCGTATTCTGTACTTGTTGCTGTGTGCTGTCATCCATAGTCGTCCGCGCTACTGTCTTCCACCGTCTGTCGTTGCTCTGTTGTCTTCTACAGTGCATCGCCTTCTGTATTCCGTCTTCGCTGGCTGGCTTGCCGTAGAGAGGTAG

mRNA sequence

ATGGCATCAGCCTCTGCATTTACATTCCCTCCATCATTTCCGAGCTCCACCTGTCGGAAACCTAAGAGGAAAGCCATTTCTCCGGCGATCTTCTGTCGAAGGTCTTCCCAATTCGGCCTCCGGCGGGAAATTTTGAAAGGGTTGTCGCTGTTTCCTCTTTCGCTCCCTCTTTTCGAATCGATAATTCCACTTCCTTCTGAATCGAAGGAGGTCGAAGTTGGCTCCTATCTCCCGCCCTCACAGTCAGACCCTTCTTTTGTGTTCTTCAAAGCTTCCCCATCCGACACCCCGGCTCTTCGTGCAGGAAATGTGCAACCATACCAATTCATTCTGCCCCCAACTTGGAAACAAACTCGTGTAGCAAATATTTTATCTGGTAATTACTGTCAACCGAAGTGTGCAGAGCCATGGGTAGAGGTAAAATTTGAAGATGACAAACAAGGGAAAATCCAGGTAGTGGCTTCCCCTTTGATTCGTCTTACTAATAAGCCTAATGCTACAATTGAAGACATAGGTAGCCCTGAGAAGGTGATCGCTTCGCTTGGCCCTTTCGTTACTGGAAATTCATACGACCCAGAAGAGCTCCTTGAAGCATCAGTTGAGAAACTCGGTGATCAGACGTACTACAAATACACACTTGAGACTCCCTATGCTCTGACGGGGACACACAATCTAGCTAAGGCAACGGCAAAAGGAAGCACAGTTGTCTTGTTTGTGGCTAGTGCAAATGATAAACAATGGCCGGCATCTGAGAAAATTCTGAGAACCATGCTCGATTCTTTCCAGCTTCGTCCGCGCTACTGTCTTCCACCGTCTGTCGTTGCTCTGTTGTCTTCTACAGTGCATCGCCTTCTGTATTCCGTCTTCGCTGGCTGGCTTGCCGTAGAGAGGTAG

Coding sequence (CDS)

ATGGCATCAGCCTCTGCATTTACATTCCCTCCATCATTTCCGAGCTCCACCTGTCGGAAACCTAAGAGGAAAGCCATTTCTCCGGCGATCTTCTGTCGAAGGTCTTCCCAATTCGGCCTCCGGCGGGAAATTTTGAAAGGGTTGTCGCTGTTTCCTCTTTCGCTCCCTCTTTTCGAATCGATAATTCCACTTCCTTCTGAATCGAAGGAGGTCGAAGTTGGCTCCTATCTCCCGCCCTCACAGTCAGACCCTTCTTTTGTGTTCTTCAAAGCTTCCCCATCCGACACCCCGGCTCTTCGTGCAGGAAATGTGCAACCATACCAATTCATTCTGCCCCCAACTTGGAAACAAACTCGTGTAGCAAATATTTTATCTGGTAATTACTGTCAACCGAAGTGTGCAGAGCCATGGGTAGAGGTAAAATTTGAAGATGACAAACAAGGGAAAATCCAGGTAGTGGCTTCCCCTTTGATTCGTCTTACTAATAAGCCTAATGCTACAATTGAAGACATAGGTAGCCCTGAGAAGGTGATCGCTTCGCTTGGCCCTTTCGTTACTGGAAATTCATACGACCCAGAAGAGCTCCTTGAAGCATCAGTTGAGAAACTCGGTGATCAGACGTACTACAAATACACACTTGAGACTCCCTATGCTCTGACGGGGACACACAATCTAGCTAAGGCAACGGCAAAAGGAAGCACAGTTGTCTTGTTTGTGGCTAGTGCAAATGATAAACAATGGCCGGCATCTGAGAAAATTCTGAGAACCATGCTCGATTCTTTCCAGCTTCGTCCGCGCTACTGTCTTCCACCGTCTGTCGTTGCTCTGTTGTCTTCTACAGTGCATCGCCTTCTGTATTCCGTCTTCGCTGGCTGGCTTGCCGTAGAGAGGTAG

Protein sequence

MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFESIIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVASANDKQWPASEKILRTMLDSFQLRPRYCLPPSVVALLSSTVHRLLYSVFAGWLAVER

Homology

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BLAST of Moc03g20790.1 vs. NCBI nr
Match: XP_022152863.1 (psbP domain-containing protein 6, chloroplastic [Momordica charantia])

HSP 1 Score: 526.2 bits (1354), Expect = 1.9e-145
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60
           MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES
Sbjct: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60

Query: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120
           IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240
           LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWPASEKILRTMLDSFQL 264
           SANDKQWPASEKILRTMLDSFQL
Sbjct: 241 SANDKQWPASEKILRTMLDSFQL 263

[Close]

BLAST of Moc03g20790.1 vs. NCBI nr
Match: XP_022948517.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176.1 PsbP domain-containing protein 6, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 483.0 bits (1242), Expect = 1.8e-132
Identity = 238/262 (90.84%), Postives = 250/262 (95.42%), Query Frame = 0


Query: 2   ASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFESI 61
           ++ASAF   PS P+++CRKPKRK ISPAIFC+R SQFG RREILKGL+L PLSLPLFES+
Sbjct: 3   SAASAFAISPSLPTASCRKPKRKPISPAIFCQRGSQFGHRREILKGLTLLPLSLPLFESV 62

Query: 62  IPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRVA 121
            PL SESKE+EVGSYLPPSQSDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTRVA
Sbjct: 63  HPLSSESKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 122

Query: 122 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 181
           NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL
Sbjct: 123 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 182

Query: 182 GPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 241
           GPFVTGN+YDPEELLE+SVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS
Sbjct: 183 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 242

Query: 242 ANDKQWPASEKILRTMLDSFQL 264
           ANDKQW ASEK+LRTMLDSFQL
Sbjct: 243 ANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of Moc03g20790.1 vs. NCBI nr
Match: XP_023521520.1 (psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 481.1 bits (1237), Expect = 6.9e-132
Identity = 236/262 (90.08%), Postives = 250/262 (95.42%), Query Frame = 0


Query: 2   ASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFESI 61
           ++ASAF   PS P+++CRKPKRK ISPA+FC+R SQF  RREILKGL+L PLSLPLFES+
Sbjct: 3   SAASAFAISPSLPTASCRKPKRKPISPAVFCQRGSQFVHRREILKGLTLLPLSLPLFESV 62

Query: 62  IPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRVA 121
            PLPS+SKE+EVGSYLPPSQSDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTRVA
Sbjct: 63  HPLPSQSKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 122

Query: 122 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 181
           NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL
Sbjct: 123 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 182

Query: 182 GPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 241
           GPFVTGN+YDPEELLE+SVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS
Sbjct: 183 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 242

Query: 242 ANDKQWPASEKILRTMLDSFQL 264
           ANDKQW ASEK+LRTMLDSFQL
Sbjct: 243 ANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of Moc03g20790.1 vs. NCBI nr
Match: XP_022998891.1 (psbP domain-containing protein 6, chloroplastic [Cucurbita maxima])

HSP 1 Score: 470.3 bits (1209), Expect = 1.2e-128
Identity = 236/264 (89.39%), Postives = 247/264 (93.56%), Query Frame = 0


Query: 1   MAS-ASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFE 60
           MAS ASA    PS P+++CRKP    I PAIFC+R SQFG RREILKGL+L PLSLPLFE
Sbjct: 1   MASVASAIAISPSLPTASCRKP----IYPAIFCQRGSQFGHRREILKGLTLLPLSLPLFE 60

Query: 61  SIIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTR 120
           S+ P+PSESKE+EVGSYLPPSQSDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTR
Sbjct: 61  SVYPIPSESKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTR 120

Query: 121 VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA 180
           VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA
Sbjct: 121 VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA 180

Query: 181 SLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFV 240
           SLGPFVTGN+YDPEELLE+SVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFV
Sbjct: 181 SLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFV 240

Query: 241 ASANDKQWPASEKILRTMLDSFQL 264
           ASANDKQW ASEK+LRTMLDSFQL
Sbjct: 241 ASANDKQWQASEKVLRTMLDSFQL 260

[Close]

BLAST of Moc03g20790.1 vs. NCBI nr
Match: XP_008463519.1 (PREDICTED: psbP domain-containing protein 6, chloroplastic [Cucumis melo] >KAA0051923.1 psbP domain-containing protein 6 [Cucumis melo var. makuwa] >TYK12239.1 psbP domain-containing protein 6 [Cucumis melo var. makuwa])

HSP 1 Score: 462.2 bits (1188), Expect = 3.3e-126
Identity = 230/263 (87.45%), Postives = 244/263 (92.78%), Query Frame = 0


Query: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60
           MAS SAFT  PSFP ST  KPK+K IS +IF ++ SQF  RREILKG +L PLS PLF+S
Sbjct: 1   MASVSAFTISPSFPFSTSHKPKKKPISSSIFSQKGSQFVPRREILKGFTLLPLSFPLFQS 60

Query: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120
           + PLPS SKE+EVGSYLPPS SDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  LNPLPSLSKEIEVGSYLPPSPSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240
           LGPFVTG++YDP+ELLE+SVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWPASEKILRTMLDSFQL 264
           SANDKQW ASEK+LRTMLDSF+L
Sbjct: 241 SANDKQWQASEKVLRTMLDSFRL 263

[Close]

BLAST of Moc03g20790.1 vs. ExPASy Swiss-Prot
Match: Q9LXX5 (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PPD6 PE=1 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 9.2e-95
Identity = 181/265 (68.30%), Postives = 204/265 (76.98%), Query Frame = 0


Query: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRRE--ILKGLSLFPLSLPLF 60
           MA+AS       F  S       KA S  +      Q   RR   +LK     P  L L 
Sbjct: 1   MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPRRRELLLKSAVAIPAILQLK 60

Query: 61  ESIIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQT 120
           E+ I   S ++EVEVGSYLP S SDPSFV FKA PSDTPALRAGNVQPYQF+LPP WKQ 
Sbjct: 61  EAPI---SAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQL 120

Query: 121 RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVI 180
           R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPLIRLTNKPNATIED+G PEKVI
Sbjct: 121 RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVI 180

Query: 181 ASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLF 240
           ASLGPFVTGNSYD +ELL+ S+EK+GDQTYYKY LETP+ALTG+HNLAKATAKGSTVVLF
Sbjct: 181 ASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLF 240

Query: 241 VASANDKQWPASEKILRTMLDSFQL 264
           V SA +KQW +S+K L  +LDSFQL
Sbjct: 241 VVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of Moc03g20790.1 vs. ExPASy TrEMBL
Match: A0A6J1DG13 (psbP domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111020489 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 9.1e-146
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60
           MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES
Sbjct: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60

Query: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120
           IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240
           LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWPASEKILRTMLDSFQL 264
           SANDKQWPASEKILRTMLDSFQL
Sbjct: 241 SANDKQWPASEKILRTMLDSFQL 263

[Close]

BLAST of Moc03g20790.1 vs. ExPASy TrEMBL
Match: A0A6J1G9G7 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111452175 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 8.8e-133
Identity = 238/262 (90.84%), Postives = 250/262 (95.42%), Query Frame = 0


Query: 2   ASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFESI 61
           ++ASAF   PS P+++CRKPKRK ISPAIFC+R SQFG RREILKGL+L PLSLPLFES+
Sbjct: 3   SAASAFAISPSLPTASCRKPKRKPISPAIFCQRGSQFGHRREILKGLTLLPLSLPLFESV 62

Query: 62  IPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRVA 121
            PL SESKE+EVGSYLPPSQSDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTRVA
Sbjct: 63  HPLSSESKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTRVA 122

Query: 122 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 181
           NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL
Sbjct: 123 NILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIASL 182

Query: 182 GPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 241
           GPFVTGN+YDPEELLE+SVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS
Sbjct: 183 GPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVAS 242

Query: 242 ANDKQWPASEKILRTMLDSFQL 264
           ANDKQW ASEK+LRTMLDSFQL
Sbjct: 243 ANDKQWQASEKVLRTMLDSFQL 264

[Close]

BLAST of Moc03g20790.1 vs. ExPASy TrEMBL
Match: A0A6J1KBG9 (psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111493415 PE=4 SV=1)

HSP 1 Score: 470.3 bits (1209), Expect = 5.9e-129
Identity = 236/264 (89.39%), Postives = 247/264 (93.56%), Query Frame = 0


Query: 1   MAS-ASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFE 60
           MAS ASA    PS P+++CRKP    I PAIFC+R SQFG RREILKGL+L PLSLPLFE
Sbjct: 1   MASVASAIAISPSLPTASCRKP----IYPAIFCQRGSQFGHRREILKGLTLLPLSLPLFE 60

Query: 61  SIIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTR 120
           S+ P+PSESKE+EVGSYLPPSQSDPSFVFFKASP DTPALRAGNVQPYQFILPPTWKQTR
Sbjct: 61  SVYPIPSESKEIEVGSYLPPSQSDPSFVFFKASPRDTPALRAGNVQPYQFILPPTWKQTR 120

Query: 121 VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA 180
           VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA
Sbjct: 121 VANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIA 180

Query: 181 SLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFV 240
           SLGPFVTGN+YDPEELLE+SVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFV
Sbjct: 181 SLGPFVTGNTYDPEELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFV 240

Query: 241 ASANDKQWPASEKILRTMLDSFQL 264
           ASANDKQW ASEK+LRTMLDSFQL
Sbjct: 241 ASANDKQWQASEKVLRTMLDSFQL 260

[Close]

BLAST of Moc03g20790.1 vs. ExPASy TrEMBL
Match: A0A5A7U7M4 (PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold769G00470 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.6e-126
Identity = 230/263 (87.45%), Postives = 244/263 (92.78%), Query Frame = 0


Query: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60
           MAS SAFT  PSFP ST  KPK+K IS +IF ++ SQF  RREILKG +L PLS PLF+S
Sbjct: 1   MASVSAFTISPSFPFSTSHKPKKKPISSSIFSQKGSQFVPRREILKGFTLLPLSFPLFQS 60

Query: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120
           + PLPS SKE+EVGSYLPPS SDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  LNPLPSLSKEIEVGSYLPPSPSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240
           LGPFVTG++YDP+ELLE+SVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWPASEKILRTMLDSFQL 264
           SANDKQW ASEK+LRTMLDSF+L
Sbjct: 241 SANDKQWQASEKVLRTMLDSFRL 263

[Close]

BLAST of Moc03g20790.1 vs. ExPASy TrEMBL
Match: A0A1S3CJG7 (psbP domain-containing protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501655 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.6e-126
Identity = 230/263 (87.45%), Postives = 244/263 (92.78%), Query Frame = 0


Query: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRREILKGLSLFPLSLPLFES 60
           MAS SAFT  PSFP ST  KPK+K IS +IF ++ SQF  RREILKG +L PLS PLF+S
Sbjct: 1   MASVSAFTISPSFPFSTSHKPKKKPISSSIFSQKGSQFVPRREILKGFTLLPLSFPLFQS 60

Query: 61  IIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120
           + PLPS SKE+EVGSYLPPS SDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV
Sbjct: 61  LNPLPSLSKEIEVGSYLPPSPSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQTRV 120

Query: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180
           ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS
Sbjct: 121 ANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVIAS 180

Query: 181 LGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240
           LGPFVTG++YDP+ELLE+SVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA
Sbjct: 181 LGPFVTGSTYDPDELLESSVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLFVA 240

Query: 241 SANDKQWPASEKILRTMLDSFQL 264
           SANDKQW ASEK+LRTMLDSF+L
Sbjct: 241 SANDKQWQASEKVLRTMLDSFRL 263

[Close]

BLAST of Moc03g20790.1 vs. TAIR 10
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein )

HSP 1 Score: 348.2 bits (892), Expect = 6.5e-96
Identity = 181/265 (68.30%), Postives = 204/265 (76.98%), Query Frame = 0


Query: 1   MASASAFTFPPSFPSSTCRKPKRKAISPAIFCRRSSQFGLRRE--ILKGLSLFPLSLPLF 60
           MA+AS       F  S       KA S  +      Q   RR   +LK     P  L L 
Sbjct: 1   MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPRRRELLLKSAVAIPAILQLK 60

Query: 61  ESIIPLPSESKEVEVGSYLPPSQSDPSFVFFKASPSDTPALRAGNVQPYQFILPPTWKQT 120
           E+ I   S ++EVEVGSYLP S SDPSFV FKA PSDTPALRAGNVQPYQF+LPP WKQ 
Sbjct: 61  EAPI---SAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQL 120

Query: 121 RVANILSGNYCQPKCAEPWVEVKFEDDKQGKIQVVASPLIRLTNKPNATIEDIGSPEKVI 180
           R+ANILSGNYCQPKCAEPW+EVKFE++KQGK+QVVASPLIRLTNKPNATIED+G PEKVI
Sbjct: 121 RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVI 180

Query: 181 ASLGPFVTGNSYDPEELLEASVEKLGDQTYYKYTLETPYALTGTHNLAKATAKGSTVVLF 240
           ASLGPFVTGNSYD +ELL+ S+EK+GDQTYYKY LETP+ALTG+HNLAKATAKGSTVVLF
Sbjct: 181 ASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLF 240

Query: 241 VASANDKQWPASEKILRTMLDSFQL 264
           V SA +KQW +S+K L  +LDSFQL
Sbjct: 241 VVSATEKQWQSSQKTLEAILDSFQL 262

The following BLAST results are available for this feature:

BLAST of Moc03g20790.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152863.1	1.9e-145	100.00	psbP domain-containing protein 6, chloroplastic [Momordica charantia]	[more]
XP_022948517.1	1.8e-132	90.84	psbP domain-containing protein 6, chloroplastic [Cucurbita moschata] >KAG6607176...	[more]
XP_023521520.1	6.9e-132	90.08	psbP domain-containing protein 6, chloroplastic-like [Cucurbita pepo subsp. pepo...	[more]
XP_022998891.1	1.2e-128	89.39	psbP domain-containing protein 6, chloroplastic [Cucurbita maxima]	[more]
XP_008463519.1	3.3e-126	87.45	PREDICTED: psbP domain-containing protein 6, chloroplastic [Cucumis melo] >KAA00...	[more]

BLAST of Moc03g20790.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LXX5	9.2e-95	68.30	PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Moc03g20790.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DG13	9.1e-146	100.00	psbP domain-containing protein 6, chloroplastic OS=Momordica charantia OX=3673 G...	[more]
A0A6J1G9G7	8.8e-133	90.84	psbP domain-containing protein 6, chloroplastic OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1KBG9	5.9e-129	89.39	psbP domain-containing protein 6, chloroplastic OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A5A7U7M4	1.6e-126	87.45	PsbP domain-containing protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CJG7	1.6e-126	87.45	psbP domain-containing protein 6, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Moc03g20790.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G56650.1	6.5e-96	68.30	Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP, C-terminal	PFAM	PF01789	PsbP	coord: 106..262 e-value: 2.8E-12 score: 47.0
None	No IPR available	GENE3D	3.40.1000.10	Mog1/PsbP, alpha/beta/alpha sandwich	coord: 82..263 e-value: 2.1E-33 score: 117.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	PANTHER	PTHR31407:SF18	PSBP DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC	coord: 35..262
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 35..262
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	SUPERFAMILY	55724	Mog1p/PsbP-like	coord: 102..263

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc03g20790	Moc03g20790	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc03g20790.1.exon1	Moc03g20790.1.exon1	exon
Moc03g20790.1.exon2	Moc03g20790.1.exon2	exon
Moc03g20790.1.exon3	Moc03g20790.1.exon3	exon
Moc03g20790.1.exon4	Moc03g20790.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc03g20790.1	cds.Moc03g20790.1	CDS
cds.Moc03g20790.1	cds.Moc03g20790.1_2	CDS
cds.Moc03g20790.1	cds.Moc03g20790.1_3	CDS
cds.Moc03g20790.1	cds.Moc03g20790.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc03g20790.1	Moc03g20790.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0005509	calcium ion binding