Moc02g03600.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g03600.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	DNA polymerase epsilon subunit C
Location	chr2: 2698266 .. 2700603 (+)
Sequence length	693
RNA-Seq Expression	Moc02g03600.1
Synteny	Moc02g03600.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCGTCCAAAAAATCTAGTACTGAAGCGAAGAGCAAAGAAGCGGGAACATCGAAATCAGCCACCAAAACCAAAGCCAAAGCCAAAACCAAAACCCTCAGCAACGCCACAAAATCCGACAAGGACGTTTCCAAGAAGAACAACAACAAGAAGAAGATTAGCAACAAGAAGCACGCCAACAATGGCTCCGCCGAGGAGAACGACGTCTTTGAGATCTCTGCTCCAGATTCAGCATCTAGAGAGGACGACGCCGATGAAGACAGAACCGAAACCACGAGTAGAAAAGCTAACAGCTCGAAATCGAAGAAAGTAAAGCGGAACCATGGGAAGAAGGAAGAGAATGGTTACGAAGAAGAAGAAGAAGAAGAAGAACAAGTCGAGGAGAAGATTTACAAATTCCCAATGCATCGGATCAAAAAAATCACGAGGGACGAAAATTCTGATTTACGTATAAATCAGGAAGCCTTGTTTCTCGTCAACAAAGCCACGGTAAGCGCCCCCCAACCAGTGAATTGTGCTCCCAGAACTGCTCGATTAGAGTTCGATTAAAGAATTAGGTATTTTCTGTTGGTGGGTGGTGGGTTGGGGAGAAATTGTTCTATAATCTTACGTTTATTGTTTCTAAAATTGATTCTGTTGCGTCTGCAAAAACTTCTTAATTGTTGCAGGAGATGTTTCTCGTACAATTTTGCAAAGATGCTTATGCTTGCTGTGCTCAGGATCGGAAAAAGTCTCTTGCTTACAAGCATCTATGTAAAGTTTCTACTCCCTGTTCTAAATAATGTGACACCTGCAAATTATATCATAGTATATTTCAATTGCAATTTACAATTATTAAAATAAAAAAAAGTAAAAATTGGACCTGAAAATAGTTGAGAGGGTTCCAACTCCACTAGCATATACACATCATGACAGAGCTTTAACTTTTAATGGGCTGCAATGTTTTAATTTATGCTCCTCATGATACAAGGGCTCACATTTAATAGCGTCTGATTTCTTTCTGTATTCATGCTGCAAAATGAATAACAGCATGATGGGAAGATATCAGGGTCCTGTCACATTTTAACATGGACTGTGAACTTAGATATAGGTTACTCTAACTTCTTGGTAAAGGGATTTGTATTATCAGCCTCATCTATAATTTTATGTTGTGTTGTGGAATTACTGATTTGTATTATCAGTGCGTTGGTTTATGCTTTCAAAGAGACGATTTCTATGGTGGCATGGAAGTTTTTGTTAAATCATATCACAAAGCCACATTTTATCTGGCTGGAATTGGATGATTTACTGACCCAAATTATGTGTAGAGAGACTCCCAATAAGTTCACGTATATGTGGAGGAATAAGAAATGGCTAGTAGTTCAATCCGATACTTGGGAAGGGAATAAGTGAGTTGGGGAGGGCTGAATATCGGCCTTCCTTATCTTGGGTAATTCTTAAGTTGGGTGGTCAACGAGACAGACAAGGGACCGAATTGGAGGAGAGTATATTTGGGAATTGATAATGGGGCATTGTGAATCTAGTAGAAATTTCAATTTAGATGAGGAGCGAACAAGAAGACTCCTGGATCTCTTCCCTTAGTTTTGTATAATGTATTCCATCCATTAATAGAAAGTTAATTCAAGTATCTATCATCTGTCTAGGCGATTTTATCAAAATAATGCTGAAAGTTTGATTAGACTTTCACTTTACATATTGCTTCATTTTATCTGGTATTGCTTCCAATTTTACATGAGGGAATTCTGATGACCCTTCTTTTATTTATTGACAACATTTTGATGGTGAACTATATGGCGGTTAAAAGGAAGGAAATAAAGAAAATTTATCTTTTCCGGAGTTACCTATGGGAACATCATTGAATTTCTATGCATATGTTGTACCTCCAGCAATCGAAATAAGATGTGTTCAATTCAAATGTATTTCTGGAACCTTATCATAGACCATCCTTTATCCTGCTTGAAATTTAACTTTAGAATCTGCTCTCTTTGGATAATAGCCACCTAATTCAGTTCAGAAAACATGTTTCTGATTGATTAACGAAGCATTATTTTAGATGTAAGACTTTCACTGAAGTAGTAGTAAGATTATCCTTTGTTGTTGCAGCATCGGTAGTTTGTAAAAGGAAGAGGTATGACTTTCTTTCAGGTACTTATACACGGCTCTTATATATGCTCAACTACTTCTATTATTTCAGATGATGAGAAATCTAACTCGATAGACAACTTATAAAACGTCACGATACTTTTTTTTTCCCTTTTCAGATTTTGTCCCAGAAAAATTAAAATTTGAAGATGCGTTAAAGGAGAGAAGCATGGCGGAATCAGGGAAAGGCTAG

mRNA sequence

ATGGCTTCGTCCAAAAAATCTAGTACTGAAGCGAAGAGCAAAGAAGCGGGAACATCGAAATCAGCCACCAAAACCAAAGCCAAAGCCAAAACCAAAACCCTCAGCAACGCCACAAAATCCGACAAGGACGTTTCCAAGAAGAACAACAACAAGAAGAAGATTAGCAACAAGAAGCACGCCAACAATGGCTCCGCCGAGGAGAACGACGTCTTTGAGATCTCTGCTCCAGATTCAGCATCTAGAGAGGACGACGCCGATGAAGACAGAACCGAAACCACGAGTAGAAAAGCTAACAGCTCGAAATCGAAGAAAGTAAAGCGGAACCATGGGAAGAAGGAAGAGAATGGTTACGAAGAAGAAGAAGAAGAAGAAGAACAAGTCGAGGAGAAGATTTACAAATTCCCAATGCATCGGATCAAAAAAATCACGAGGGACGAAAATTCTGATTTACGTATAAATCAGGAAGCCTTGTTTCTCGTCAACAAAGCCACGGAGATGTTTCTCGTACAATTTTGCAAAGATGCTTATGCTTGCTGTGCTCAGGATCGGAAAAAGTCTCTTGCTTACAAGCATCTATCATCGGTAGTTTGTAAAAGGAAGAGGTATGACTTTCTTTCAGATTTTGTCCCAGAAAAATTAAAATTTGAAGATGCGTTAAAGGAGAGAAGCATGGCGGAATCAGGGAAAGGCTAG

Coding sequence (CDS)

ATGGCTTCGTCCAAAAAATCTAGTACTGAAGCGAAGAGCAAAGAAGCGGGAACATCGAAATCAGCCACCAAAACCAAAGCCAAAGCCAAAACCAAAACCCTCAGCAACGCCACAAAATCCGACAAGGACGTTTCCAAGAAGAACAACAACAAGAAGAAGATTAGCAACAAGAAGCACGCCAACAATGGCTCCGCCGAGGAGAACGACGTCTTTGAGATCTCTGCTCCAGATTCAGCATCTAGAGAGGACGACGCCGATGAAGACAGAACCGAAACCACGAGTAGAAAAGCTAACAGCTCGAAATCGAAGAAAGTAAAGCGGAACCATGGGAAGAAGGAAGAGAATGGTTACGAAGAAGAAGAAGAAGAAGAAGAACAAGTCGAGGAGAAGATTTACAAATTCCCAATGCATCGGATCAAAAAAATCACGAGGGACGAAAATTCTGATTTACGTATAAATCAGGAAGCCTTGTTTCTCGTCAACAAAGCCACGGAGATGTTTCTCGTACAATTTTGCAAAGATGCTTATGCTTGCTGTGCTCAGGATCGGAAAAAGTCTCTTGCTTACAAGCATCTATCATCGGTAGTTTGTAAAAGGAAGAGGTATGACTTTCTTTCAGATTTTGTCCCAGAAAAATTAAAATTTGAAGATGCGTTAAAGGAGAGAAGCATGGCGGAATCAGGGAAAGGCTAG

Protein sequence

MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHANNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG

Homology

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BLAST of Moc02g03600.1 vs. NCBI nr
Match: XP_022140741.1 (DNA polymerase epsilon subunit C [Momordica charantia])

HSP 1 Score: 404.4 bits (1038), Expect = 6.4e-109
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120
           NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180
           EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180

Query: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG 231
           QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG
Sbjct: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG 230

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BLAST of Moc02g03600.1 vs. NCBI nr
Match: XP_023534490.1 (ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 287.3 bits (734), Expect = 1.1e-73
Identity = 181/234 (77.35%), Postives = 196/234 (83.76%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MAS+KKSSTE KSKEAGTSK ATKT     TKTL NA KSDK+ SKK   KKKI + KH+
Sbjct: 1   MASTKKSSTEIKSKEAGTSKPATKT-----TKTL-NARKSDKNDSKK--KKKKIYSNKHS 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY--- 120
           NNGS +E+D   ISAP SAS E+DA E+R ETTS+KA +SKSK  K NH KKEENGY   
Sbjct: 61  NNGSVKEDDAVFISAPGSASEEEDAGEERAETTSKKAKTSKSKVGKWNHVKKEENGYAEQ 120

Query: 121 -EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAY 180
            EEEEEEEE+V+EKIY FPM RIKKITRDENSD RINQEALFLVNKATEMFL+QFCKDAY
Sbjct: 121 EEEEEEEEEEVQEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLLQFCKDAY 180

Query: 181 ACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG 231
           ACCA+DRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDA+KE  MAESGKG
Sbjct: 181 ACCARDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDAVKEIGMAESGKG 226

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BLAST of Moc02g03600.1 vs. NCBI nr
Match: XP_008463933.1 (PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo])

HSP 1 Score: 286.6 bits (732), Expect = 1.9e-73
Identity = 177/231 (76.62%), Postives = 191/231 (82.68%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAK KEAGTSK A       K KT +NA  SDK++SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPA------PKAKTHNNARNSDKEISKKKKKKKKISIS--T 60

Query: 61  NNGSAEENDVFEISAPDSASREDD--ADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120
           NNGS ++N+V  +S P  ++ EDD  ADED+ ETTSRK  +SKSKKVKRNH K+E+NGY 
Sbjct: 61  NNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYA 120

Query: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180
           EEEEEE   EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 EEEEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 230
           CAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 CAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

[Close]

BLAST of Moc02g03600.1 vs. NCBI nr
Match: XP_022986059.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 285.0 bits (728), Expect = 5.6e-73
Identity = 179/235 (76.17%), Postives = 190/235 (80.85%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKA-KAKTKTLSNATKSDKDVSKKNNNKKKISNKKH 60
           MASSKKSS+EAKSKEAGTSK A K K         +NA K DK  SKK   K   +N KH
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKK--KKVSSNNNKH 60

Query: 61  ANNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY-- 120
            +NGS +EN+V  ISAP       DA+EDR ETTS+  N+SKSKKVKRNHGKKEENGY  
Sbjct: 61  TSNGSVKENEVLPISAP------GDAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAE 120

Query: 121 ---EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKD 180
              EEEEE EE+ EEKIYKFPM+RIKKI RDENSDLRINQEALFLVNKATEMFLVQFCKD
Sbjct: 121 EEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKD 180

Query: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 230
           AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 227

[Close]

BLAST of Moc02g03600.1 vs. NCBI nr
Match: XP_023512055.1 (DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita pepo subsp. pepo] >XP_023512056.1 DNA polymerase epsilon subunit C-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-72
Identity = 177/235 (75.32%), Postives = 189/235 (80.43%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSS+EAKSKEAGTSK A K K        +NA   DK  SKK       +N KH 
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNN--NNARTIDKVYSKKKKVSNNNNNNKHT 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY--- 120
           +NGS +EN+V  ISAP       DA+EDR ETTS+  N++KSKKVKRNHGKKEENGY   
Sbjct: 61  SNGSVKENEVLPISAP------GDAEEDRVETTSKSPNTTKSKKVKRNHGKKEENGYAEE 120

Query: 121 ---EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKD 180
              EEE EEEE+VEEKIYKFPM+RIKKI RDENSDLRINQEALFLVNKATEMFLVQFCKD
Sbjct: 121 EEEEEEAEEEEEVEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKD 180

Query: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 230
           AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 227

[Close]

BLAST of Moc02g03600.1 vs. ExPASy Swiss-Prot
Match: Q9NRG0 (Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 8.0e-06
Identity = 33/102 (32.35%), Postives = 53/102 (51.96%), Query Frame = 0


Query: 128 EEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQDRKKSL 187
           E+++   P+ RI+ I +       INQEAL L  KATE+F+      +Y   +   KK L
Sbjct: 13  EQRLISLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQCLATYSYRHGSGKEKKVL 72

Query: 188 AYKHLSSVVCKRKRYDFLSDFVPEKL---KFEDALKERSMAE 227
            Y  L++   + + + FL+D +P+K+   K+   LKE    E
Sbjct: 73  TYSDLANTAQQSETFQFLADILPKKILASKYLKMLKEEKREE 114

[Close]

BLAST of Moc02g03600.1 vs. ExPASy Swiss-Prot
Match: Q9JKP8 (Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-05
Identity = 34/107 (31.78%), Postives = 56/107 (52.34%), Query Frame = 0


Query: 123 EEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCAQD 182
           +E+  ++++   P+ RI+ I +       INQEAL L  KATE+F+      +Y   +  
Sbjct: 8   KEKCGDQRLVSLPLSRIRVIMKSSPEVSSINQEALVLTAKATELFVQYLATCSYRHGSGK 67

Query: 183 RKKSLAYKHLSSVVCKRKRYDFLSDFVPEKL---KFEDALKERSMAE 227
            KK+L Y  L+S     +   FL+D +P+K+   K+   LKE+   E
Sbjct: 68  AKKALTYSDLASTAEDSETLQFLADILPKKILASKYLKMLKEKREEE 114

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BLAST of Moc02g03600.1 vs. ExPASy Swiss-Prot
Match: Q9V452 (Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 GN=Chrac-16 PE=1 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 5.2e-05
Identity = 33/97 (34.02%), Postives = 50/97 (51.55%), Query Frame = 0


Query: 135 PMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYA-CCAQDRKKSLAYKHLS 194
           P+ R++ I +       I  E LFL+ K TE+F+      AY     Q   ++L Y+HLS
Sbjct: 21  PLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLS 80

Query: 195 SVVCKRKRYDFLSDFVPEKLK---FEDALKERSMAES 228
            VV K K  +FL   VP+K++   F++ L+    A S
Sbjct: 81  QVVNKNKNLEFLLQIVPQKIRVHQFQEMLRLNRSAGS 117

[Close]

BLAST of Moc02g03600.1 vs. ExPASy TrEMBL
Match: A0A6J1CGZ0 (DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 PE=4 SV=1)

HSP 1 Score: 404.4 bits (1038), Expect = 3.1e-109
Identity = 230/230 (100.00%), Postives = 230/230 (100.00%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA
Sbjct: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120
           NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE
Sbjct: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120

Query: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180
           EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA
Sbjct: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180

Query: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG 231
           QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG
Sbjct: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGKG 230

[Close]

BLAST of Moc02g03600.1 vs. ExPASy TrEMBL
Match: A0A1S3CKU7 (DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 9.4e-74
Identity = 177/231 (76.62%), Postives = 191/231 (82.68%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAK KEAGTSK A       K KT +NA  SDK++SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKGKEAGTSKPA------PKAKTHNNARNSDKEISKKKKKKKKISIS--T 60

Query: 61  NNGSAEENDVFEISAPDSASREDD--ADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120
           NNGS ++N+V  +S P  ++ EDD  ADED+ ETTSRK  +SKSKKVKRNH K+E+NGY 
Sbjct: 61  NNGSVKDNEVLAVSPPGGSASEDDDAADEDKAETTSRKHKTSKSKKVKRNHAKEEDNGYA 120

Query: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180
           EEEEEE   EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 EEEEEE--AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 230
           CAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 CAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

[Close]

BLAST of Moc02g03600.1 vs. ExPASy TrEMBL
Match: A0A6J1JF10 (DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111483919 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 2.7e-73
Identity = 179/235 (76.17%), Postives = 190/235 (80.85%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKA-KAKTKTLSNATKSDKDVSKKNNNKKKISNKKH 60
           MASSKKSS+EAKSKEAGTSK A K K         +NA K DK  SKK   K   +N KH
Sbjct: 1   MASSKKSSSEAKSKEAGTSKPAPKNKTHNNNNNNNNNARKVDKVYSKK--KKVSSNNNKH 60

Query: 61  ANNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGY-- 120
            +NGS +EN+V  ISAP       DA+EDR ETTS+  N+SKSKKVKRNHGKKEENGY  
Sbjct: 61  TSNGSVKENEVLPISAP------GDAEEDRVETTSKSPNTSKSKKVKRNHGKKEENGYAE 120

Query: 121 ---EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKD 180
              EEEEE EE+ EEKIYKFPM+RIKKI RDENSDLRINQEALFLVNKATEMFLVQFCKD
Sbjct: 121 EEEEEEEEAEEEAEEKIYKFPMNRIKKIMRDENSDLRINQEALFLVNKATEMFLVQFCKD 180

Query: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 230
           AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 AYACCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 227

[Close]

BLAST of Moc02g03600.1 vs. ExPASy TrEMBL
Match: A0A6J1K264 (transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 PE=4 SV=1)

HSP 1 Score: 282.0 bits (720), Expect = 2.3e-72
Identity = 172/229 (75.11%), Postives = 187/229 (81.66%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MAS+KKS+ E KSKEAGTSK ATKTK         NA KSDK+ SKK   KKKI + KH+
Sbjct: 1   MASTKKSNAEIKSKEAGTSKPATKTKT-------LNARKSDKNDSKKKKKKKKIYSNKHS 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYEEE 120
           NNGS +E+D   ISAP SAS E+DA EDR ET S++A +SKSK  K NH KKEENGY E+
Sbjct: 61  NNGSVKEDDAVFISAPGSASEEEDAGEDRAETRSKEAKTSKSKVGKWNHVKKEENGYAEQ 120

Query: 121 EEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYACCA 180
           EEEEE+  EKIY FPM RIKKITRDENSD RINQEALFLVNKATEMFLVQFCKDAYACC+
Sbjct: 121 EEEEEEAHEKIYTFPMQRIKKITRDENSDFRINQEALFLVNKATEMFLVQFCKDAYACCS 180

Query: 181 QDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 230
           +DRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKE  MAESGK
Sbjct: 181 RDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKEIGMAESGK 222

[Close]

BLAST of Moc02g03600.1 vs. ExPASy TrEMBL
Match: A0A0A0KCQ2 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G294440 PE=4 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 3.9e-72
Identity = 173/231 (74.89%), Postives = 188/231 (81.39%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           MASSKKSSTEAKSKE GTSK +       K KT +NA  SDKD+SKK   KKKIS     
Sbjct: 1   MASSKKSSTEAKSKEVGTSKPS------PKAKTHNNARNSDKDISKKKKKKKKISISIST 60

Query: 61  NNGSAEENDVFEISAPDSASRE--DDADEDRTETTSRKANSSKSKKVKRNHGKKEENGYE 120
           NNGS ++N    +SAP +++ E  D ADED+ ETTSRK+N+SKSKKVKRNH K+E+N Y 
Sbjct: 61  NNGSVKDNHALAVSAPGASASEDADAADEDKAETTSRKSNTSKSKKVKRNHAKEEDNRYA 120

Query: 121 EEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYAC 180
            EEE     EEKIYKFPMHRIKKI RDENSDLRINQEALFLVNKA+EMFLVQFCKDAYAC
Sbjct: 121 AEEE----AEEKIYKFPMHRIKKIMRDENSDLRINQEALFLVNKASEMFLVQFCKDAYAC 180

Query: 181 CAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 230
           CAQDRKKSLAYKHLSSVV KRKRYDFLSDFVPEKLKFEDALKERSMAESGK
Sbjct: 181 CAQDRKKSLAYKHLSSVVSKRKRYDFLSDFVPEKLKFEDALKERSMAESGK 221

[Close]

BLAST of Moc02g03600.1 vs. TAIR 10
Match: AT1G07980.1 (nuclear factor Y, subunit C10 )

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-17
Identity = 86/233 (36.91%), Postives = 130/233 (55.79%), Query Frame = 0


Query: 1   MASSKKSSTEAKSKEAGTSKSATKTKAKAKTKTLSNATKSDKDVSKKNNNKKKISNKKHA 60
           M SSKK   +    +   +K++ ++K  + ++T            KK +NK  I  KK  
Sbjct: 1   MVSSKKPKEKKARSDVVVNKASGRSKRSSGSRT------------KKTSNKVNIVKKK-- 60

Query: 61  NNGSAEENDVFEISAPDSASREDDADEDRTETTSRKANSSKSKKVKRNHGKK---EENGY 120
                   +++EIS    +S  D  +E      ++K+N   S   KR +GK         
Sbjct: 61  -------PEIYEIS---ESSSSDSVEEAIRGDEAKKSNGVVS---KRGNGKSVGIPTKTS 120

Query: 121 EEEEEEEEQVEEKIYKFPMHRIKKITRDENSDLRINQEALFLVNKATEMFLVQFCKDAYA 180
           +  EE++   E+   KFPM+RI++I R +NS  +I Q+A+FLVNKATEMF+ +F ++AY 
Sbjct: 121 KNREEDDGGAEDAKIKFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYD 180

Query: 181 CCAQDRKKSLAYKHLSSVVCKRKRYDFLSDFVPEKLKFEDALK--ERSMAESG 229
              +D+KK + YKHLSSVV   +RY+FL+D VPEKLK E AL+  ER M ++G
Sbjct: 181 SSVKDKKKFIHYKHLSSVVSNDQRYEFLADSVPEKLKAEAALEEWERGMTDAG 206

The following BLAST results are available for this feature:

BLAST of Moc02g03600.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022140741.1	6.4e-109	100.00	DNA polymerase epsilon subunit C [Momordica charantia]	[more]
XP_023534490.1	1.1e-73	77.35	ABC transporter F family member 4-like [Cucurbita pepo subsp. pepo]	[more]
XP_008463933.1	1.9e-73	76.62	PREDICTED: DNA polymerase epsilon subunit C [Cucumis melo]	[more]
XP_022986059.1	5.6e-73	76.17	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita maxima]	[more]
XP_023512055.1	1.3e-72	75.32	DNA polymerase epsilon subunit C-like isoform X1 [Cucurbita pepo subsp. pepo] >X...	[more]

BLAST of Moc02g03600.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9NRG0	8.0e-06	32.35	Chromatin accessibility complex protein 1 OS=Homo sapiens OX=9606 GN=CHRAC1 PE=1...	[more]
Q9JKP8	5.2e-05	31.78	Chromatin accessibility complex protein 1 OS=Mus musculus OX=10090 GN=Chrac1 PE=...	[more]
Q9V452	5.2e-05	34.02	Chromatin accessibility complex 16kD protein OS=Drosophila melanogaster OX=7227 ...	[more]

BLAST of Moc02g03600.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CGZ0	3.1e-109	100.00	DNA polymerase epsilon subunit C OS=Momordica charantia OX=3673 GN=LOC111011331 ...	[more]
A0A1S3CKU7	9.4e-74	76.62	DNA polymerase epsilon subunit C OS=Cucumis melo OX=3656 GN=LOC103501940 PE=4 SV...	[more]
A0A6J1JF10	2.7e-73	76.17	DNA polymerase epsilon subunit C-like isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1K264	2.3e-72	75.11	transcriptional activator HAP5-like OS=Cucurbita maxima OX=3661 GN=LOC111491038 ...	[more]
A0A0A0KCQ2	3.9e-72	74.89	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G2944...	[more]

BLAST of Moc02g03600.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07980.1	2.1e-17	36.91	nuclear factor Y, subunit C10	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 110..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..126
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..98
None	No IPR available	PANTHER	PTHR10252	HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED	coord: 19..226
None	No IPR available	PANTHER	PTHR10252:SF93	HISTONE-LIKE TRANSCRIPTION FACTOR AND ARCHAEAL HISTONE FAMILY PROTEIN, EXPRESSED	coord: 19..226
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 133..196 e-value: 3.8E-15 score: 55.9
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 91..211 e-value: 3.9E-23 score: 83.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 149..211

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc02g03600	Moc02g03600	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc02g03600.1.exon1	Moc02g03600.1.exon1	exon
Moc02g03600.1.exon2	Moc02g03600.1.exon2	exon
Moc02g03600.1.exon3	Moc02g03600.1.exon3	exon
Moc02g03600.1.exon4	Moc02g03600.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc02g03600.1	cds.Moc02g03600.1	CDS
cds.Moc02g03600.1	cds.Moc02g03600.1_2	CDS
cds.Moc02g03600.1	cds.Moc02g03600.1_3	CDS
cds.Moc02g03600.1	cds.Moc02g03600.1_4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc02g03600.1	Moc02g03600.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046982	protein heterodimerization activity