Moc02g01450.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc02g01450.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	Transmembrane protein
Location	chr2: 1099085 .. 1099907 (-)
Sequence length	297
RNA-Seq Expression	Moc02g01450.1
Synteny	Moc02g01450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAAAGGGAAACAGAGTCCTGCTCTTTGCGCAGTCTTCTGCCACATCCTAACACGACGCCGTTTTCTCCTCACCTCGGAAGGTGCACCGTAACTACCATGAACCCTCCTCCACTCCACCATCCCTCTTCATCTTCTTCCTCCCGCCACCGTTTCTTCTAGCCCTAGGCCAAAATTAGCTTTACAAACAGAGAACCATTAAAATGGCAGTAGCCCACCATCACTCCCATTGAATACACTTCAAAAATCAAAAAAACAAACAGAAAAAAGTGACCCATTGATTGAAATTATCGCAAGGGGAAAGTAGTGGCACATGGACAAATTAAATTAACCCTACACAGTTCAAATTCAAAAAGAAGAAAAAAAATCATGATAATATTACAGAGCAAACCTAATTTGAAAAGGGAAAAAAAACTGCATTTCCAAGCTCAAATTCTCACACACAGTGAAATGACTGGAAAAAGAAGAAAAAACCCCAAACTTATTGAAACTAATATCTAATAAAAAAAGAAAAAGAAAAGAAAAGAGAAGAAAAATCAGAACTTGGTATTTGATGATTGATATCTCTGTAAATTTTTGTATGAACACACGAGCTTAAATTGGGTTTAGCTTTCAGACTGGAATGTCCGGCAGCGCGAAGAAGAAGAAGAGCTCTAATTCCGGAGGGGCAAAAAAGGCAATTGGCGATCGCCGGAAAGAGCAATCGGAAACGGGTCTTTGCTTCTTCGGCGCCGGCGGGCATGTTACAATCTCCGGAATTCTGAATCTCTCTGCTCTCGGCGTGCTGCAGCCGCCGTCGATGTCGTCGTTGGAACACTGA

mRNA sequence

ATGGAGGAAAGGGAAACAGAGTCCTGCTCTTTGCGCAGTCTTCTGCCACATCCTAACACGACGCCGTTTTCTCCTCACCTCGGAAGCTTTCAGACTGGAATGTCCGGCAGCGCGAAGAAGAAGAAGAGCTCTAATTCCGGAGGGGCAAAAAAGGCAATTGGCGATCGCCGGAAAGAGCAATCGGAAACGGGTCTTTGCTTCTTCGGCGCCGGCGGGCATGTTACAATCTCCGGAATTCTGAATCTCTCTGCTCTCGGCGTGCTGCAGCCGCCGTCGATGTCGTCGTTGGAACACTGA

Coding sequence (CDS)

ATGGAGGAAAGGGAAACAGAGTCCTGCTCTTTGCGCAGTCTTCTGCCACATCCTAACACGACGCCGTTTTCTCCTCACCTCGGAAGCTTTCAGACTGGAATGTCCGGCAGCGCGAAGAAGAAGAAGAGCTCTAATTCCGGAGGGGCAAAAAAGGCAATTGGCGATCGCCGGAAAGAGCAATCGGAAACGGGTCTTTGCTTCTTCGGCGCCGGCGGGCATGTTACAATCTCCGGAATTCTGAATCTCTCTGCTCTCGGCGTGCTGCAGCCGCCGTCGATGTCGTCGTTGGAACACTGA

Protein sequence

MEERETESCSLRSLLPHPNTTPFSPHLGSFQTGMSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPPSMSSLEH

Homology

[Close]

BLAST of Moc02g01450.1 vs. NCBI nr
Match: XP_016900741.1 (PREDICTED: uncharacterized protein LOC107991009 [Cucumis melo] >KAA0041417.1 transmembrane protein [Cucumis melo var. makuwa] >TYJ96135.1 transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 89.7 bits (221), Expect = 1.5e-14
Identity = 49/61 (80.33%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 35 SGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPPSMS 94
          +G A KKKSSNSGGAKKA+GDRR EQSET L FFGAGGHV ISGIL LSA GVLQPPS  
Sbjct: 4  TGKATKKKSSNSGGAKKAMGDRRNEQSETALGFFGAGGHVRISGILCLSAFGVLQPPSEH 63

Query: 95 S 96
          S
Sbjct: 64 S 64

[Close]

BLAST of Moc02g01450.1 vs. NCBI nr
Match: QHO18661.1 (uncharacterized protein DS421_11g322430 [Arachis hypogaea])

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-07
Identity = 38/59 (64.41%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 40 KKKSSNSGGAKKAIGDRRKEQ---SETGLCFFGAGGHVTISGILNLSALGVLQPPSMSS 96
          KKK S SGG K   GDRRKEQ    E  LCFFGAGGHV ISGILN S  GV Q P ++S
Sbjct: 2  KKKRSKSGGEKNESGDRRKEQFEDDEITLCFFGAGGHVEISGILNFSPFGVEQQPPLTS 60

[Close]

BLAST of Moc02g01450.1 vs. NCBI nr
Match: QHO48225.1 (uncharacterized protein DS421_1g03730 [Arachis hypogaea])

HSP 1 Score: 64.3 bits (155), Expect = 6.6e-07
Identity = 37/59 (62.71%), Postives = 39/59 (66.10%), Query Frame = 0


Query: 40 KKKSSNSGGAKKAIGDRRKEQ---SETGLCFFGAGGHVTISGILNLSALGVLQPPSMSS 96
          KKK S SGG K   GD RKEQ    E  LCFFGAGGHV ISGILN S  GV Q P ++S
Sbjct: 2  KKKRSKSGGEKNESGDLRKEQFEDDEITLCFFGAGGHVEISGILNFSPFGVEQQPPLTS 60

[Close]

BLAST of Moc02g01450.1 vs. NCBI nr
Match: CAD5323680.1 (unnamed protein product [Arabidopsis thaliana])

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-06
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 38 AKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 92
          A  KKSS SGGAKK I  RR  Q    LCFFGAGGHV+ISGIL+  A GV QPP
Sbjct: 13 ALTKKSSISGGAKKTICLRRNTQFFETLCFFGAGGHVSISGILDFLAFGVQQPP 66

[Close]

BLAST of Moc02g01450.1 vs. NCBI nr
Match: GFY96234.1 (hypothetical protein Acr_11g0005400 [Actinidia rufa])

HSP 1 Score: 57.4 bits (137), Expect = 8.1e-05
Identity = 36/63 (57.14%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 34 MSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPPSM 93
          MS +A KKKSS SGG K AIG+ R E     L FFG  GH  ISG LNL A GV QP + 
Sbjct: 1  MSRNANKKKSSISGGEKAAIGELRSENLAATLFFFGGSGHDKISGNLNLFAFGVEQPDTS 60

Query: 94 SSL 97
          S L
Sbjct: 61 SLL 63

[Close]

BLAST of Moc02g01450.1 vs. ExPASy TrEMBL
Match: A0A5D3BCF0 (Transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold182G001030 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.1e-15
Identity = 49/61 (80.33%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 35 SGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPPSMS 94
          +G A KKKSSNSGGAKKA+GDRR EQSET L FFGAGGHV ISGIL LSA GVLQPPS  
Sbjct: 4  TGKATKKKSSNSGGAKKAMGDRRNEQSETALGFFGAGGHVRISGILCLSAFGVLQPPSEH 63

Query: 95 S 96
          S
Sbjct: 64 S 64

[Close]

BLAST of Moc02g01450.1 vs. ExPASy TrEMBL
Match: A0A1S4DXN3 (uncharacterized protein LOC107991009 OS=Cucumis melo OX=3656 GN=LOC107991009 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 7.1e-15
Identity = 49/61 (80.33%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 35 SGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPPSMS 94
          +G A KKKSSNSGGAKKA+GDRR EQSET L FFGAGGHV ISGIL LSA GVLQPPS  
Sbjct: 4  TGKATKKKSSNSGGAKKAMGDRRNEQSETALGFFGAGGHVRISGILCLSAFGVLQPPSEH 63

Query: 95 S 96
          S
Sbjct: 64 S 64

[Close]

BLAST of Moc02g01450.1 vs. ExPASy TrEMBL
Match: A0A7G2EN36 ((thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOCUS11614 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.2e-06
Identity = 36/54 (66.67%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 38 AKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 92
          A  KKSS SGGAKK I  RR  Q    LCFFGAGGHV+ISGIL+  A GV QPP
Sbjct: 13 ALTKKSSISGGAKKTICLRRNTQFFETLCFFGAGGHVSISGILDFLAFGVQQPP 66

[Close]

BLAST of Moc02g01450.1 vs. ExPASy TrEMBL
Match: A0A7J0FBZ7 (Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_11g0005400 PE=4 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 3.9e-05
Identity = 36/63 (57.14%), Postives = 39/63 (61.90%), Query Frame = 0


Query: 34 MSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPPSM 93
          MS +A KKKSS SGG K AIG+ R E     L FFG  GH  ISG LNL A GV QP + 
Sbjct: 1  MSRNANKKKSSISGGEKAAIGELRSENLAATLFFFGGSGHDKISGNLNLFAFGVEQPDTS 60

Query: 94 SSL 97
          S L
Sbjct: 61 SLL 63

[Close]

BLAST of Moc02g01450.1 vs. ExPASy TrEMBL
Match: A0A654F956 (Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS13521 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 5.7e-04
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 34 MSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 92
          M+  A+K K+S    AKK I  RR  Q    LCFFGAGGHV+ISGIL+  A GV QPP
Sbjct: 1  MNKVARKNKTS----AKKTICLRRNTQFFETLCFFGAGGHVSISGILDFLAFGVQQPP 54

[Close]

BLAST of Moc02g01450.1 vs. TAIR 10
Match: AT3G20900.1 (unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.5 bits (127), Expect = 1.1e-07
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 34 MSGSAKKKKSSNSGGAKKAIGDRRKEQSETGLCFFGAGGHVTISGILNLSALGVLQPP 92
          M+  A+K K+S    AKK I  RR  Q    LCFFGAGGHV+ISGIL+  A GV QPP
Sbjct: 1  MNKVARKNKTS----AKKTICLRRNTQFFETLCFFGAGGHVSISGILDFLAFGVQQPP 54

The following BLAST results are available for this feature:

BLAST of Moc02g01450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900741.1	1.5e-14	80.33	PREDICTED: uncharacterized protein LOC107991009 [Cucumis melo] >KAA0041417.1 tra...	[more]
QHO18661.1	1.0e-07	64.41	uncharacterized protein DS421_11g322430 [Arachis hypogaea]	[more]
QHO48225.1	6.6e-07	62.71	uncharacterized protein DS421_1g03730 [Arachis hypogaea]	[more]
CAD5323680.1	2.5e-06	66.67	unnamed protein product [Arabidopsis thaliana]	[more]
GFY96234.1	8.1e-05	57.14	hypothetical protein Acr_11g0005400 [Actinidia rufa]	[more]

BLAST of Moc02g01450.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Moc02g01450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCF0	7.1e-15	80.33	Transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18...	[more]
A0A1S4DXN3	7.1e-15	80.33	uncharacterized protein LOC107991009 OS=Cucumis melo OX=3656 GN=LOC107991009 PE=...	[more]
A0A7G2EN36	1.2e-06	66.67	(thale cress) hypothetical protein OS=Arabidopsis thaliana OX=3702 GN=AT9943_LOC...	[more]
A0A7J0FBZ7	3.9e-05	57.14	Uncharacterized protein OS=Actinidia rufa OX=165716 GN=Acr_11g0005400 PE=4 SV=1	[more]
A0A654F956	5.7e-04	56.90	Uncharacterized protein OS=Arabidopsis thaliana OX=3702 GN=AN1_LOCUS13521 PE=4 S...	[more]

BLAST of Moc02g01450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G20900.1	1.1e-07	56.90	unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacter...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 12..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..60

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc02g01450	Moc02g01450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc02g01450.1.exon2	Moc02g01450.1.exon2	exon
Moc02g01450.1.exon1	Moc02g01450.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc02g01450.1	cds.Moc02g01450.1_2	CDS
cds.Moc02g01450.1	cds.Moc02g01450.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc02g01450.1	Moc02g01450.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane