Moc01g23080.1 (mRNA) Bitter gourd (OHB3-1) v2

Overview


Name	Moc01g23080.1
Type	mRNA
Organism	Momordica charantia cv. OHB3-1 (Bitter gourd (OHB3-1) v2)
Description	60S acidic ribosomal protein P2-like protein
Location	chr1: 16121659 .. 16123857 (-)
Sequence length	621
RNA-Seq Expression	Moc01g23080.1
Synteny	Moc01g23080.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATGGCGCATCATATCGAAGCAGTTGTTAACTGCAAAATATTTATGAGAGAGAGAGGTGAACAAATCCCAGTGTGACGCGTATTGGGAAATGGAAATCATACGGAAGCTGCTCTCCTCAGTCCTCTCACGAGTTTTTTTTCCGTTTATGAACCGAATCCTTTCCTGCTTACAGACCAGCGATTTCTCCCTCTTATAATCACCAGCCCACTCATTTCTTCTGCGTTTTCAACTTCCCCTCTTCCAAGGCCAAGGAGTTTTTCGCTCTCTTCCCATTTCCCTCCCTTTCATTCTTCGTTGCTCCTCTTTGTGGTGATTCAGCTATCTTTGCAGAAGAAGATGAAGGTGGTTGCTGCTTATTTGCTCGCTGTTTTGGGCGGAAACACCAGCCCTACTGCTCGTGATATTAGGACCATTCTCGCCTCTGGTTTGTTTTCTCTTTCGTTCCCTGTTTTTAGTTGTTCTGTGGGTTTCGTGGCGCTTTTACCTCGCGTTGATAAACTGGTTTAAATGCCTTGGAAACCCTATGGATCTGAAATCAAGTAAGAAGAAACGGATCGGAGCTGTGTTTCATGGGTCTAAGAGCATTTATTTAGCCCCGTGTTTGGTTTTAGCAACCTTTGCCCTAATGGTCAAGTCGGGGATATGGTTCAAAACTTCAAACCCATATGCAATCTATTATAATGCTGAAATATTGTGAATATTATGGGTTTTCTTACCACTAAACTTTGGAAGGTTTGATAGTTGTTTTGTGAGATTTTAAGTTGGTAGTGTGTTATGAAAAGCTTTGCATATTTACGTAATTTTATAATTTATTTTACAAATTTAGATGATCCTAAACCTAAATAATAGAACAATAAACCTGATGCTATCGATGGATATTTAGAACGATGGTTGAGTGCTTAACTAGAATGTTTGAACTTTTATCTATCTTTCTTGTTTAGAGATTGGGAGAGTCTTCATATTTGTTTGTATTGAAAAGAAAAAATGTTACAACTTTTGTTTACATATTTATGTTTTTATTTGAATATTGGATAGAGAGTAAATTTTTATAGTGAAATATATTTTAGACTTACCCTTAAAAGCACAAGCATTATTGCCTTTCTTAGAATAAAATAAAATAAAATAAAATGCTAAATTATTTAATTAATTTTTTACAAACAATCTTGTTTTGGTTTTGATTGTCTTTTTGTTTTAATATTTTTACACCAACACTGTATAATTTATCTCTTGAATTATTGTATTGTTCAATATTTTTTTAACATTGTTTTTCATATGAATATATCATTAACTAAACAAAAATTTTACCTCAAAGTAATTGAAATGTGGGGAAAAAAAGTAAAAAGATATATGTCAATAAATGTGTCCTTCCAATTTACTTGTCAATTTTTTTATAAAAATGATTTATCAATTTATTCATGTGTTGGTATCTGTACTTATTTGACAAAAATTTACCAAAAAACAAACATTTTTTGTTTTCAAATGGTATAAATCTAAACCGACCAATTCTTGTGTCTGTATATGTACTTTTTGACAAAATTGACCAATCCACAAACATTTTTTTGTTTTTGTTTTTAAATGTTATAAATCTAAACAGACCAATATTAGTTAACTAGAATTGACGGAATTTTCCCCTTTGTGTGAAAACTTGTCTTTAACTTGTTCAATGCGTAACTATCTAAAACCATACATCCAAAGGCAGCCCTTTTGGTTTGTGATTGCTTGGTTTAGTTTGTGTCTGAATTTTCATGGTTCATCAGCTCCGAACTTTTGAAATATGCCTGAATGGCAATTATTAATGTGCGCACAGTTGGAGCTGAAGCTGAAGATGAAAAGATTGAGCTGCTCCTTTCTCAAGTTAAGGGTAAGGATATAGCAGAGGTTGTTGCCTGCGGGAGGGAGAAGATGGCATCTCTACCTGCCCGCGGTGTCGTTGCAGCTGCTGTTGGTGTGCTCACTGCCGGTGGGGGCGATGCTTCCGCTGCCACGGCTGCTCTGGCTGCAGCTGAGGCTAAGAAAGAGGAGAAGAAGGAAGATGTTGAGGATTCTGATGATGTAAATACATCCCCTTCGTAACTTTGGATTTGTTGTTTGAGTACCAATTTTATCATTTGTTTTGTGACCCCCTTTTTCTTTTTCCTGTTTTGCAGGACATTTGCTTTACTCTGTTTGATGAGTAAGGAATTGGGTTCCTGA

mRNA sequence

ATGGCAATGGCGCATCATATCGAAGCAGTTGTTAACTGCAAAATATTTATGAGAGAGAGAGACCAGCGATTTCTCCCTCTTATAATCACCAGCCCACTCATTTCTTCTGCGTTTTCAACTTCCCCTCTTCCAAGGCCAAGGAGTTTTTCGCTCTCTTCCCATTTCCCTCCCTTTCATTCTTCGTTGCTCCTCTTTGTGGTGATTCAGCTATCTTTGCAGAAGAAGATGAAGGTGGTTGCTGCTTATTTGCTCGCTGTTTTGGGCGGAAACACCAGCCCTACTGCTCGTGATATTAGGACCATTCTCGCCTCTGTTGGAGCTGAAGCTGAAGATGAAAAGATTGAGCTGCTCCTTTCTCAAGTTAAGGGTAAGGATATAGCAGAGGTTGTTGCCTGCGGGAGGGAGAAGATGGCATCTCTACCTGCCCGCGGTGTCGTTGCAGCTGCTGTTGGTGTGCTCACTGCCGGTGGGGGCGATGCTTCCGCTGCCACGGCTGCTCTGGCTGCAGCTGAGGCTAAGAAAGAGGAGAAGAAGGAAGATGTTGAGGATTCTGATGATGTAAATACATCCCCTTCGACATTTGCTTTACTCTGTTTGATGAGTAAGGAATTGGGTTCCTGA

Coding sequence (CDS)

ATGGCAATGGCGCATCATATCGAAGCAGTTGTTAACTGCAAAATATTTATGAGAGAGAGAGACCAGCGATTTCTCCCTCTTATAATCACCAGCCCACTCATTTCTTCTGCGTTTTCAACTTCCCCTCTTCCAAGGCCAAGGAGTTTTTCGCTCTCTTCCCATTTCCCTCCCTTTCATTCTTCGTTGCTCCTCTTTGTGGTGATTCAGCTATCTTTGCAGAAGAAGATGAAGGTGGTTGCTGCTTATTTGCTCGCTGTTTTGGGCGGAAACACCAGCCCTACTGCTCGTGATATTAGGACCATTCTCGCCTCTGTTGGAGCTGAAGCTGAAGATGAAAAGATTGAGCTGCTCCTTTCTCAAGTTAAGGGTAAGGATATAGCAGAGGTTGTTGCCTGCGGGAGGGAGAAGATGGCATCTCTACCTGCCCGCGGTGTCGTTGCAGCTGCTGTTGGTGTGCTCACTGCCGGTGGGGGCGATGCTTCCGCTGCCACGGCTGCTCTGGCTGCAGCTGAGGCTAAGAAAGAGGAGAAGAAGGAAGATGTTGAGGATTCTGATGATGTAAATACATCCCCTTCGACATTTGCTTTACTCTGTTTGATGAGTAAGGAATTGGGTTCCTGA

Protein sequence

MAMAHHIEAVVNCKIFMRERDQRFLPLIITSPLISSAFSTSPLPRPRSFSLSSHFPPFHSSLLLFVVIQLSLQKKMKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDDVNTSPSTFALLCLMSKELGS

Homology

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BLAST of Moc01g23080.1 vs. NCBI nr
Match: XP_022143770.1 (60S acidic ribosomal protein P2-2-like [Momordica charantia])

HSP 1 Score: 193.7 bits (491), Expect = 1.5e-45
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
Sbjct: 61  KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 111

[Close]

BLAST of Moc01g23080.1 vs. NCBI nr
Match: EPS74099.1 (hypothetical protein M569_00658, partial [Genlisea aurea])

HSP 1 Score: 132.5 bits (332), Expect = 4.2e-27
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 74  KKMKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACG 133
           + MKVVAAYLLAVLGGN+SPTA D++ IL SVGA+A+DE+IELLLSQVKGKDI E++A G
Sbjct: 1   RDMKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASG 60

Query: 134 REKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           REK+AS+PA G  A AV     GGG    A AA AAAEAKKEEK E+ E+SDD
Sbjct: 61  REKLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDD 113

[Close]

BLAST of Moc01g23080.1 vs. NCBI nr
Match: KAB1225394.1 (60S acidic ribosomal protein P2-4 [Morella rubra])

HSP 1 Score: 129.8 bits (325), Expect = 2.7e-26
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKV+AAYLLAVLGGNT P+A D++ IL SVGAE ED+KIELLLS+VKGKDI +++A GRE
Sbjct: 1   MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAETEDDKIELLLSEVKGKDITDLIASGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+ G VA AV   T GGG A+AA AA AAAE KKEEK E+ E+SDD
Sbjct: 61  KLASVPSGGGVAVAVAA-TGGGGGAAAAAAAPAAAETKKEEKVEEKEESDD 110

[Close]

BLAST of Moc01g23080.1 vs. NCBI nr
Match: KAG5543313.1 (hypothetical protein RHGRI_016142 [Rhododendron griersonianum])

HSP 1 Score: 129.4 bits (324), Expect = 3.5e-26
Identity = 77/112 (68.75%), Postives = 92/112 (82.14%), Query Frame = 0


Query: 75  KMKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGR 134
           KMKVVAAYLLAVLGGNTSP A D++ IL SVGAEA+DE+IELLLS+VKGKDI E++A GR
Sbjct: 4   KMKVVAAYLLAVLGGNTSPCADDLKDILGSVGAEADDERIELLLSEVKGKDITELIAAGR 63

Query: 135 EKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           EK+AS+PA G    A+  ++AGGG   AA AA AAAE+KKEEK E+ E+SDD
Sbjct: 64  EKLASVPAGGGGGVAMAAVSAGGG---AAAAAPAAAESKKEEKVEEKEESDD 112

[Close]

BLAST of Moc01g23080.1 vs. NCBI nr
Match: KZM99264.1 (hypothetical protein DCAR_013374 [Daucus carota subsp. sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.0e-25
Identity = 77/114 (67.54%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKV+AAYLLAVLGGNTSPTA DI+ IL SVGAEAED++IELLLSQVKGKDI E++A GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDIKNILGSVGAEAEDDRIELLLSQVKGKDITELIASGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDDVNT 190
           K+AS+P+ G  A AV     GG       A  AAAEAKKEEK ED  +SDDV+T
Sbjct: 61  KLASVPSGGAGAVAVAAPATGG------AAPPAAAEAKKEEKAEDEGESDDVST 108

[Close]

BLAST of Moc01g23080.1 vs. ExPASy Swiss-Prot
Match: Q9SLF7 (60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 1.1e-25
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAAYLLAVL G  SPT+ DI+TIL SVGAE ED +IELLL +VKGKD+AE++A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+ G    AV   T+GGG    A    +AAE+KKEEKKE+ E+SDD
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA----SAAESKKEEKKEEKEESDD 107

[Close]

BLAST of Moc01g23080.1 vs. ExPASy Swiss-Prot
Match: P41099 (60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 69/110 (62.73%), Postives = 86/110 (78.18%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKV+AA+LLA+LGGNTSPT  D+++ILASVGA+A+D+KIELLLSQVKGKDI E++A GRE
Sbjct: 1   MKVIAAFLLALLGGNTSPTDEDLKSILASVGADADDDKIELLLSQVKGKDITELIASGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSD 186
           ++AS+P+ G VA A      GGGDA AA    AA E KKEEK E+  D +
Sbjct: 61  RLASVPSGGGVAVAAAA-GGGGGDAPAA----AAEEPKKEEKSEEESDEE 105

[Close]

BLAST of Moc01g23080.1 vs. ExPASy Swiss-Prot
Match: P51407 (60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 SV=2)

HSP 1 Score: 112.8 bits (281), Expect = 4.5e-24
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAA+LLAVL G  SPT  DI+ IL SVGAE ED +IELLL +VKGKD+AE++A GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+ G    AV   T+GGG    A     AAE+KKEEKKE+ E+SDD
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA----PAAESKKEEKKEEKEESDD 107

[Close]

BLAST of Moc01g23080.1 vs. ExPASy Swiss-Prot
Match: O24415 (60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-22
Identity = 63/111 (56.76%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKV+AAYLLAVLGGNTSPTA D+++IL SVGAEA++EK+E LL+++K KDI EV+A GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDVKSILESVGAEADEEKLEFLLTELKDKDITEVIAAGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           +++S+P+ G      G +  G   A A   A  A EAKKEEK E+ E+SD+
Sbjct: 61  RLSSVPSGG------GAIDMGAPAAVAGGGAAPAEEAKKEEKVEEKEESDE 105

[Close]

BLAST of Moc01g23080.1 vs. ExPASy Swiss-Prot
Match: O01725 (60S acidic ribosomal protein P2 OS=Branchiostoma floridae OX=7739 PE=3 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 1.6e-21
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           M+ VAAYLLAVLGGN +P+A DI+ IL SVG +AEDE++  ++ ++KGKDI EV+A GR 
Sbjct: 1   MRYVAAYLLAVLGGNANPSAGDIKKILGSVGIDAEDERLNKVIGELKGKDIEEVMAAGRG 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K++S+P+ G VAAA G    GGG A+    A  AAE KKEEKKE+ E+  D
Sbjct: 61  KLSSMPSGGGVAAAAG----GGGAAAGGGGAAPAAEEKKEEKKEESEEESD 107

[Close]

BLAST of Moc01g23080.1 vs. ExPASy TrEMBL
Match: A0A6J1CPQ6 (60S acidic ribosomal protein P2-2-like OS=Momordica charantia OX=3673 GN=LOC111013605 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 7.4e-46
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE
Sbjct: 1   MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD
Sbjct: 61  KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 111

[Close]

BLAST of Moc01g23080.1 vs. ExPASy TrEMBL
Match: S8D2Z2 (Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00658 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-27
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0


Query: 74  KKMKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACG 133
           + MKVVAAYLLAVLGGN+SPTA D++ IL SVGA+A+DE+IELLLSQVKGKDI E++A G
Sbjct: 1   RDMKVVAAYLLAVLGGNSSPTAEDLKDILGSVGADADDERIELLLSQVKGKDITELIASG 60

Query: 134 REKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           REK+AS+PA G  A AV     GGG    A AA AAAEAKKEEK E+ E+SDD
Sbjct: 61  REKLASVPAGGGGAVAVAAPVGGGGGGGGAAAAPAAAEAKKEEKVEEKEESDD 113

[Close]

BLAST of Moc01g23080.1 vs. ExPASy TrEMBL
Match: A0A6A1WJT8 (60S acidic ribosomal protein P2-4 OS=Morella rubra OX=262757 GN=CJ030_MR1G015666 PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.3e-26
Identity = 76/111 (68.47%), Postives = 91/111 (81.98%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKV+AAYLLAVLGGNT P+A D++ IL SVGAE ED+KIELLLS+VKGKDI +++A GRE
Sbjct: 1   MKVIAAYLLAVLGGNTCPSAEDLKDILGSVGAETEDDKIELLLSEVKGKDITDLIASGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+ G VA AV   T GGG A+AA AA AAAE KKEEK E+ E+SDD
Sbjct: 61  KLASVPSGGGVAVAVAA-TGGGGGAAAAAAAPAAAETKKEEKVEEKEESDD 110

[Close]

BLAST of Moc01g23080.1 vs. ExPASy TrEMBL
Match: A0A165YUL9 (Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013374 PE=3 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 5.0e-26
Identity = 77/114 (67.54%), Postives = 88/114 (77.19%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKV+AAYLLAVLGGNTSPTA DI+ IL SVGAEAED++IELLLSQVKGKDI E++A GRE
Sbjct: 1   MKVIAAYLLAVLGGNTSPTADDIKNILGSVGAEAEDDRIELLLSQVKGKDITELIASGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDDVNT 190
           K+AS+P+ G  A AV     GG       A  AAAEAKKEEK ED  +SDDV+T
Sbjct: 61  KLASVPSGGAGAVAVAAPATGG------AAPPAAAEAKKEEKAEDEGESDDVST 108

[Close]

BLAST of Moc01g23080.1 vs. ExPASy TrEMBL
Match: A0A498IEX4 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_034970 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 6.5e-26
Identity = 77/120 (64.17%), Postives = 95/120 (79.17%), Query Frame = 0


Query: 69  QLSLQKKMKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAE 128
           +++ + +MKVVAAYLLAVLGG T+PTA DI+ IL SVGAEA+D++I+LLLS+VKGKDI E
Sbjct: 25  EITARAEMKVVAAYLLAVLGGKTTPTAEDIKDILGSVGAEADDDRIQLLLSEVKGKDITE 84

Query: 129 VVACGREKMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDDVN 188
           ++A GREK+AS+PA G    AV V   GGG   AA AA AAAEAKKEEK E+ E+SDD N
Sbjct: 85  LIASGREKLASVPAGG--GGAVAVAATGGG---AAAAAPAAAEAKKEEKVEEKEESDDWN 139

[Close]

BLAST of Moc01g23080.1 vs. TAIR 10
Match: AT2G27710.1 (60S acidic ribosomal protein family )

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-27
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAAYLLAVL G  SPT+ DI+TIL SVGAE ED +IELLL +VKGKD+AE++A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+ G    AV   T+GGG    A    +AAE+KKEEKKE+ E+SDD
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA----SAAESKKEEKKEEKEESDD 107

[Close]

BLAST of Moc01g23080.1 vs. TAIR 10
Match: AT2G27710.2 (60S acidic ribosomal protein family )

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-27
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAAYLLAVL G  SPT+ DI+TIL SVGAE ED +IELLL +VKGKD+AE++A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+ G    AV   T+GGG    A    +AAE+KKEEKKE+ E+SDD
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA----SAAESKKEEKKEEKEESDD 107

[Close]

BLAST of Moc01g23080.1 vs. TAIR 10
Match: AT2G27710.3 (60S acidic ribosomal protein family )

HSP 1 Score: 118.2 bits (295), Expect = 7.6e-27
Identity = 70/111 (63.06%), Postives = 85/111 (76.58%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAAYLLAVL G  SPT+ DI+TIL SVGAE ED +IELLL +VKGKD+AE++A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+ G    AV   T+GGG    A    +AAE+KKEEKKE+ E+SDD
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA----SAAESKKEEKKEEKEESDD 107

[Close]

BLAST of Moc01g23080.1 vs. TAIR 10
Match: AT2G27720.1 (60S acidic ribosomal protein family )

HSP 1 Score: 112.8 bits (281), Expect = 3.2e-25
Identity = 68/111 (61.26%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAA+LLAVL G  SPT  DI+ IL SVGAE ED +IELLL +VKGKD+AE++A GRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+ G    AV   T+GGG    A     AAE+KKEEKKE+ E+SDD
Sbjct: 61  KLASVPSGGGGGVAVASATSGGGGGGGA----PAAESKKEEKKEEKEESDD 107

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BLAST of Moc01g23080.1 vs. TAIR 10
Match: AT2G27710.4 (60S acidic ribosomal protein family )

HSP 1 Score: 108.2 bits (269), Expect = 7.9e-24
Identity = 66/111 (59.46%), Postives = 79/111 (71.17%), Query Frame = 0


Query: 76  MKVVAAYLLAVLGGNTSPTARDIRTILASVGAEAEDEKIELLLSQVKGKDIAEVVACGRE 135
           MKVVAAYLLAVL G  SPT+ DI+TIL SVGAE ED +IELLL +VKGKD+AE++A GRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 136 KMASLPARGVVAAAVGVLTAGGGDASAATAALAAAEAKKEEKKEDVEDSDD 187
           K+AS+P+              GG AS       AAE+KKEEKKE+ E+SDD
Sbjct: 61  KLASVPS--------------GGGAS-------AAESKKEEKKEEKEESDD 90

The following BLAST results are available for this feature:

BLAST of Moc01g23080.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143770.1	1.5e-45	100.00	60S acidic ribosomal protein P2-2-like [Momordica charantia]	[more]
EPS74099.1	4.2e-27	68.14	hypothetical protein M569_00658, partial [Genlisea aurea]	[more]
KAB1225394.1	2.7e-26	68.47	60S acidic ribosomal protein P2-4 [Morella rubra]	[more]
KAG5543313.1	3.5e-26	68.75	hypothetical protein RHGRI_016142 [Rhododendron griersonianum]	[more]
KZM99264.1	1.0e-25	67.54	hypothetical protein DCAR_013374 [Daucus carota subsp. sativus]	[more]

BLAST of Moc01g23080.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SLF7	1.1e-25	63.06	60S acidic ribosomal protein P2-2 OS=Arabidopsis thaliana OX=3702 GN=RPP2B PE=1 ...	[more]
P41099	1.2e-24	62.73	60S acidic ribosomal protein P2 OS=Parthenium argentatum OX=35935 PE=3 SV=1	[more]
P51407	4.5e-24	61.26	60S acidic ribosomal protein P2-1 OS=Arabidopsis thaliana OX=3702 GN=RPP2A PE=3 ...	[more]
O24415	1.1e-22	56.76	60S acidic ribosomal protein P2B OS=Zea mays OX=4577 GN=RPP2B PE=1 SV=1	[more]
O01725	1.6e-21	55.86	60S acidic ribosomal protein P2 OS=Branchiostoma floridae OX=7739 PE=3 SV=1	[more]

BLAST of Moc01g23080.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CPQ6	7.4e-46	100.00	60S acidic ribosomal protein P2-2-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
S8D2Z2	2.0e-27	68.14	Uncharacterized protein (Fragment) OS=Genlisea aurea OX=192259 GN=M569_00658 PE=...	[more]
A0A6A1WJT8	1.3e-26	68.47	60S acidic ribosomal protein P2-4 OS=Morella rubra OX=262757 GN=CJ030_MR1G015666...	[more]
A0A165YUL9	5.0e-26	67.54	Uncharacterized protein OS=Daucus carota subsp. sativus OX=79200 GN=DCAR_013374 ...	[more]
A0A498IEX4	6.5e-26	64.17	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_034970 PE=3 SV=1	[more]

BLAST of Moc01g23080.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27710.1	7.6e-27	63.06	60S acidic ribosomal protein family	[more]
AT2G27710.2	7.6e-27	63.06	60S acidic ribosomal protein family	[more]
AT2G27710.3	7.6e-27	63.06	60S acidic ribosomal protein family	[more]
AT2G27720.1	3.2e-25	61.26	60S acidic ribosomal protein family	[more]
AT2G27710.4	7.9e-24	59.46	60S acidic ribosomal protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (OHB3-1) v2
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 160..187
None	No IPR available	PFAM	PF00428	Ribosomal_60s	coord: 92..186 e-value: 1.1E-11 score: 45.2
None	No IPR available	PANTHER	PTHR21141:SF94	60S ACIDIC RIBOSOMAL PROTEIN P2-1	coord: 76..187
IPR038716	Ribosomal protein P1/P2, N-terminal domain	GENE3D	1.10.10.1410		coord: 75..133 e-value: 2.4E-25 score: 90.4
IPR044076	Ribosomal protein P2	PANTHER	PTHR21141	60S ACIDIC RIBOSOMAL PROTEIN FAMILY MEMBER	coord: 76..187
IPR044076	Ribosomal protein P2	CDD	cd05833	Ribosomal_P2	coord: 76..159 e-value: 7.99892E-36 score: 120.061
IPR027534	Ribosomal protein L12/P1/P2 family	HAMAP	MF_01478	Ribosomal_L12_arch	coord: 77..195 score: 13.136995

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Moc01g23080	Moc01g23080	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Moc01g23080.1.exon4	Moc01g23080.1.exon4	exon
Moc01g23080.1.exon3	Moc01g23080.1.exon3	exon
Moc01g23080.1.exon2	Moc01g23080.1.exon2	exon
Moc01g23080.1.exon1	Moc01g23080.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
cds.Moc01g23080.1	cds.Moc01g23080.1_4	CDS
cds.Moc01g23080.1	cds.Moc01g23080.1_3	CDS
cds.Moc01g23080.1	cds.Moc01g23080.1_2	CDS
cds.Moc01g23080.1	cds.Moc01g23080.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Moc01g23080.1	Moc01g23080.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002182	cytoplasmic translational elongation
biological_process	GO:0006414	translational elongation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome