MS028292.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS028292.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Unknown protein
Location	scaffold47: 2560478 .. 2561060 (-)
Sequence length	384
RNA-Seq Expression	MS028292.1
Synteny	MS028292.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCGTTGAGGTATCCTAAAAGTTTTTTTTAATATCTTTTTTGCAACGTAGAACGAAGATTCGAACTTCCAACCTTAACAAATTGACCTAAAAATAGTCGTTTATATATATATTTTGATAAGGGAGAAAAGAGCAATATAGAAGAATGATAAGAGATATTTTTTCTCTTCGATAAATAGCTATAAAATTTTTAGCGATGATTTTTGTAGACTGTATCTTCCAACTCTGTTCTTTCGGGAGAAACACGTGATCTTAAAGAGACAGATACAAAAGAAGAAGTGGAGGAAAAAGCGGCGGACGCCGTACCAAAACCGGAAGAGGAAAAGCAGGAGGAAGAAGAGAGCGTTGAAGTTGTTGCTCCGAACGATGAAGAAGTTGAAGTTGCGGCCAAGGAGACTGAAGAGGAGGAAGTCGAGGAAGAAGAAGATGAGGTTGTGATCCTGTCGGAGGACGAGGCGGTGGAGGAATTAGTCGAAGAAGAGAATGGTGGCTCAGACGAGTCAGCGACAATGGAGATCGGAACTCCAGAGGTAGAGGCGGAGAAGGAAGAGGAAGCGCCAGCGAATACGGCGGAATAA

mRNA sequence

ATGGCCACCGTTGAGACTGTATCTTCCAACTCTGTTCTTTCGGGAGAAACACGTGATCTTAAAGAGACAGATACAAAAGAAGAAGTGGAGGAAAAAGCGGCGGACGCCGTACCAAAACCGGAAGAGGAAAAGCAGGAGGAAGAAGAGAGCGTTGAAGTTGTTGCTCCGAACGATGAAGAAGTTGAAGTTGCGGCCAAGGAGACTGAAGAGGAGGAAGTCGAGGAAGAAGAAGATGAGGTTGTGATCCTGTCGGAGGACGAGGCGGTGGAGGAATTAGTCGAAGAAGAGAATGGTGGCTCAGACGAGTCAGCGACAATGGAGATCGGAACTCCAGAGGTAGAGGCGGAGAAGGAAGAGGAAGCGCCAGCGAATACGGCGGAATAA

Coding sequence (CDS)

ATGGCCACCGTTGAGACTGTATCTTCCAACTCTGTTCTTTCGGGAGAAACACGTGATCTTAAAGAGACAGATACAAAAGAAGAAGTGGAGGAAAAAGCGGCGGACGCCGTACCAAAACCGGAAGAGGAAAAGCAGGAGGAAGAAGAGAGCGTTGAAGTTGTTGCTCCGAACGATGAAGAAGTTGAAGTTGCGGCCAAGGAGACTGAAGAGGAGGAAGTCGAGGAAGAAGAAGATGAGGTTGTGATCCTGTCGGAGGACGAGGCGGTGGAGGAATTAGTCGAAGAAGAGAATGGTGGCTCAGACGAGTCAGCGACAATGGAGATCGGAACTCCAGAGGTAGAGGCGGAGAAGGAAGAGGAAGCGCCAGCGAATACGGCGGAATAA

Protein sequence

MATVETVSSNSVLSGETRDLKETDTKEEVEEKAADAVPKPEEEKQEEEESVEVVAPNDEEVEVAAKETEEEEVEEEEDEVVILSEDEAVEELVEEENGGSDESATMEIGTPEVEAEKEEEAPANTAE

Homology

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BLAST of MS028292.1 vs. NCBI nr
Match: XP_022136241.1 (uncharacterized protein C53C9.2-like [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 1.4e-44
Identity = 121/127 (95.28%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MATVETVSSNSVLSGETRDLKETDTKEEVEEKAADAVPKPEEEKQEEEESVEVVAPNDEE 60
           MAT ETVSSNSVLSGET DLK TDTKEEVEEKA DAVPKPEE +QEEEESVEVVAPNDEE
Sbjct: 1   MATAETVSSNSVLSGETXDLKGTDTKEEVEEKAGDAVPKPEEVRQEEEESVEVVAPNDEE 60

Query: 61  VEVAAKETEEEEVEEEEDEVVILSEDEAVEELVEEENGGSDESATMEIGTPEVEAEKEEE 120
           VEVAAKETEEEEVEEEEDEVVILSEDEAVEELVEEENGGSDESATMEIGTPEVEAEKEEE
Sbjct: 61  VEVAAKETEEEEVEEEEDEVVILSEDEAVEELVEEENGGSDESATMEIGTPEVEAEKEEE 120

Query: 121 APANTAE 128
           APANTAE
Sbjct: 121 APANTAE 127

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BLAST of MS028292.1 vs. NCBI nr
Match: KAG6572249.1 (hypothetical protein SDJN03_28977, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.6 bits (135), Expect = 1.8e-04
Identity = 67/140 (47.86%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 1   MATVETVSSNSVLSGETRDLKETDTKEEVEEKAADAVPKPEEEKQEEEESVEVVA--PND 60
           MATVET+S N+ L  ET  LKET  KE VEE A  AV   E+ ++EE   VE VA  P+ 
Sbjct: 1   MATVETISPNAALLEETNVLKETAAKEGVEEPAPPAVTPEEKAEKEESVEVETVAEPPHS 60

Query: 61  EEV---EVAAKETEEEEVEEEEDEVVILS-------EDEAVEELVEEENGGSDESATMEI 120
           E     E      EEEEVEEEE+EVVIL+       E EAV E+ +EE+   DES+  E 
Sbjct: 61  EATVLNEKVEATEEEEEVEEEEEEVVILTDESKAEEEPEAVAEVTKEESDSPDESSAPEA 120

Query: 121 GTPEVEAEKE-EEAPANTAE 128
             P  E E E +EAPA   E
Sbjct: 121 DAPATEEEDEKKEAPAEKTE 140

[Close]

BLAST of MS028292.1 vs. ExPASy TrEMBL
Match: A0A6J1C2Z5 (uncharacterized protein C53C9.2-like OS=Momordica charantia OX=3673 GN=LOC111007988 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 6.6e-45
Identity = 121/127 (95.28%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MATVETVSSNSVLSGETRDLKETDTKEEVEEKAADAVPKPEEEKQEEEESVEVVAPNDEE 60
           MAT ETVSSNSVLSGET DLK TDTKEEVEEKA DAVPKPEE +QEEEESVEVVAPNDEE
Sbjct: 1   MATAETVSSNSVLSGETXDLKGTDTKEEVEEKAGDAVPKPEEVRQEEEESVEVVAPNDEE 60

Query: 61  VEVAAKETEEEEVEEEEDEVVILSEDEAVEELVEEENGGSDESATMEIGTPEVEAEKEEE 120
           VEVAAKETEEEEVEEEEDEVVILSEDEAVEELVEEENGGSDESATMEIGTPEVEAEKEEE
Sbjct: 61  VEVAAKETEEEEVEEEEDEVVILSEDEAVEELVEEENGGSDESATMEIGTPEVEAEKEEE 120

Query: 121 APANTAE 128
           APANTAE
Sbjct: 121 APANTAE 127

The following BLAST results are available for this feature:

BLAST of MS028292.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136241.1	1.4e-44	95.28	uncharacterized protein C53C9.2-like [Momordica charantia]	[more]
KAG6572249.1	1.8e-04	47.86	hypothetical protein SDJN03_28977, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of MS028292.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS028292.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2Z5	6.6e-45	95.28	uncharacterized protein C53C9.2-like OS=Momordica charantia OX=3673 GN=LOC111007...	[more]

BLAST of MS028292.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 59..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 111..127
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS028292	MS028292	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS028292.1-cds	MS028292.1-cds-scaffold47:2560478..2560846	CDS
MS028292.1-cds	MS028292.1-cds-scaffold47:2561046..2561060	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS028292.1	MS028292.1-protein	polypeptide