MS022999.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS022999.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DNA polymerase delta small subunit
Location	scaffold357: 444767 .. 444862 (-)
Sequence length	96
RNA-Seq Expression	MS022999.1
Synteny	MS022999.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGACGCAGACATGGCGAAGAACAGTGGAAGGGGCTTCAAAGATGTTATTAGAGAGACATTACAACACACACAGACGTTTGATAAGTGACATTGTC

mRNA sequence

GTGACGCAGACATGGCGAAGAACAGTGGAAGGGGCTTCAAAGATGTTATTAGAGAGACATTACAACACACACAGACGTTTGATAAGTGACATTGTC

Coding sequence (CDS)

GTGACGCAGACATGGCGAAGAACAGTGGAAGGGGCTTCAAAGATGTTATTAGAGAGACATTACAACACACACAGACGTTTGATAAGTGACATTGTC

Protein sequence

VTQTWRRTVEGASKMLLERHYNTHRRLISDIV

Homology

[Close]

BLAST of MS022999.1 vs. NCBI nr
Match: XP_022158341.1 (uncharacterized protein LOC111024849 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 2.8e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASKMLLERHYNTHRRLISDIV
Sbjct: 103 IQKTWRRTVEGASKMLLERHYNTHRRLISDIV 134

[Close]

BLAST of MS022999.1 vs. NCBI nr
Match: XP_022983155.1 (uncharacterized protein LOC111481793 [Cucurbita maxima] >KAG7017556.1 hypothetical protein SDJN02_19422, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASK+LLE+HYNTHRRLISDIV
Sbjct: 109 IQKTWRRTVEGASKVLLEKHYNTHRRLISDIV 140

[Close]

BLAST of MS022999.1 vs. NCBI nr
Match: XP_008443054.1 (PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo] >KAA0043733.1 uncharacterized protein E6C27_scaffold236G00620 [Cucumis melo var. makuwa] >TYK25399.1 uncharacterized protein E5676_scaffold352G005410 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASK+LLE+HYNTHRRLISDIV
Sbjct: 104 IQKTWRRTVEGASKVLLEKHYNTHRRLISDIV 135

[Close]

BLAST of MS022999.1 vs. NCBI nr
Match: XP_004136571.1 (uncharacterized protein LOC101222384 [Cucumis sativus] >KGN59301.1 hypothetical protein Csa_001466 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASK+LLE+HYNTHRRLISDIV
Sbjct: 106 IQKTWRRTVEGASKVLLEKHYNTHRRLISDIV 137

[Close]

BLAST of MS022999.1 vs. NCBI nr
Match: XP_022935142.1 (uncharacterized protein LOC111442101 [Cucurbita moschata])

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASK+LLE+HYNTHRRLISDIV
Sbjct: 109 IQKTWRRTVEGASKVLLEKHYNTHRRLISDIV 140

[Close]

BLAST of MS022999.1 vs. ExPASy TrEMBL
Match: A0A6J1E0N1 (uncharacterized protein LOC111024849 OS=Momordica charantia OX=3673 GN=LOC111024849 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-07
Identity = 29/32 (90.62%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASKMLLERHYNTHRRLISDIV
Sbjct: 103 IQKTWRRTVEGASKMLLERHYNTHRRLISDIV 134

[Close]

BLAST of MS022999.1 vs. ExPASy TrEMBL
Match: A0A5A7TJU8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005410 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASK+LLE+HYNTHRRLISDIV
Sbjct: 104 IQKTWRRTVEGASKVLLEKHYNTHRRLISDIV 135

[Close]

BLAST of MS022999.1 vs. ExPASy TrEMBL
Match: A0A6J1J4Z4 (uncharacterized protein LOC111481793 OS=Cucurbita maxima OX=3661 GN=LOC111481793 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASK+LLE+HYNTHRRLISDIV
Sbjct: 109 IQKTWRRTVEGASKVLLEKHYNTHRRLISDIV 140

[Close]

BLAST of MS022999.1 vs. ExPASy TrEMBL
Match: A0A0A0LGY2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G807310 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASK+LLE+HYNTHRRLISDIV
Sbjct: 106 IQKTWRRTVEGASKVLLEKHYNTHRRLISDIV 137

[Close]

BLAST of MS022999.1 vs. ExPASy TrEMBL
Match: A0A6J1F4R1 (uncharacterized protein LOC111442101 OS=Cucurbita moschata OX=3662 GN=LOC111442101 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 8.9e-07
Identity = 27/32 (84.38%), Postives = 31/32 (96.88%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWRRTVEGASK+LLE+HYNTHRRLISDIV
Sbjct: 109 IQKTWRRTVEGASKVLLEKHYNTHRRLISDIV 140

[Close]

BLAST of MS022999.1 vs. TAIR 10
Match: AT2G42110.1 (unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 49.3 bits (116), Expect = 6.7e-07
Identity = 18/32 (56.25%), Postives = 28/32 (87.50%), Query Frame = 0


Query: 1   VTQTWRRTVEGASKMLLERHYNTHRRLISDIV 33
           + +TWR+T+EGAS++ +E+HYN HRRL +D+V
Sbjct: 106 IGKTWRKTMEGASRVFIEKHYNRHRRLTNDVV 137

The following BLAST results are available for this feature:

BLAST of MS022999.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158341.1	2.8e-07	90.63	uncharacterized protein LOC111024849 [Momordica charantia]	[more]
XP_022983155.1	1.8e-06	84.38	uncharacterized protein LOC111481793 [Cucurbita maxima] >KAG7017556.1 hypothetic...	[more]
XP_008443054.1	1.8e-06	84.38	PREDICTED: uncharacterized protein LOC103486764 [Cucumis melo] >KAA0043733.1 unc...	[more]
XP_004136571.1	1.8e-06	84.38	uncharacterized protein LOC101222384 [Cucumis sativus] >KGN59301.1 hypothetical ...	[more]
XP_022935142.1	1.8e-06	84.38	uncharacterized protein LOC111442101 [Cucurbita moschata]	[more]

BLAST of MS022999.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS022999.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E0N1	1.4e-07	90.63	uncharacterized protein LOC111024849 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A5A7TJU8	8.9e-07	84.38	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1J4Z4	8.9e-07	84.38	uncharacterized protein LOC111481793 OS=Cucurbita maxima OX=3661 GN=LOC111481793...	[more]
A0A0A0LGY2	8.9e-07	84.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G807310 PE=4 SV=1	[more]
A0A6J1F4R1	8.9e-07	84.38	uncharacterized protein LOC111442101 OS=Cucurbita moschata OX=3662 GN=LOC1114421...	[more]

BLAST of MS022999.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G42110.1	6.7e-07	56.25	unknown protein; Has 27 Blast hits to 27 proteins in 11 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36355	EXPRESSED PROTEIN	coord: 2..32

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS022999	MS022999	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS022999.1-cds	MS022999.1-cds-scaffold357:444767..444862	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS022999.1	MS022999.1-protein	polypeptide