MS022968.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS022968.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Calcium load-activated calcium channel
Location	scaffold357: 217886 .. 218458 (-)
Sequence length	573
RNA-Seq Expression	MS022968.1
Synteny	MS022968.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACGATCCCTCTCTTCTCCTCCTTCCGATACTCCGACAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCGTCGTTTGCGAGGCCATCTCCTGGCTTCTCATCTACCGCACCAACTCCTACAAGACCCTCCGCTCCTCCATCGACAAAGCCGCTAAGAAGCTCGAGACCATGAAGACCGAGAGCTCCAAAATCTCCGTGAAAAAGTCCAAAACCAAGAAGATCGATCGCGTCGAGACCAGTCTGAAGGAATCGAATCGCGACCTCTCGCTCTTCAAGTTCAAGTCCGGCGCCGTCGTCGCCCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTCGTGGCCAAATTGCCGTTTAAGCCTTTTGGGCTTGTGATGAAGATGAGTCACCGAGGGTTGCAGGGAGACGATCCCACCGATTGCGCTATGGCTTTCTTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATCTCCAGAAGTTTTTGGGATTCTCGCCGCCGAGGGGCGCCGGCGCCGGCTTATTTCCGATGCCAGATCCCAAGACAAAC

mRNA sequence

ATGGCCACGATCCCTCTCTTCTCCTCCTTCCGATACTCCGACAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCGTCGTTTGCGAGGCCATCTCCTGGCTTCTCATCTACCGCACCAACTCCTACAAGACCCTCCGCTCCTCCATCGACAAAGCCGCTAAGAAGCTCGAGACCATGAAGACCGAGAGCTCCAAAATCTCCGTGAAAAAGTCCAAAACCAAGAAGATCGATCGCGTCGAGACCAGTCTGAAGGAATCGAATCGCGACCTCTCGCTCTTCAAGTTCAAGTCCGGCGCCGTCGTCGCCCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTCGTGGCCAAATTGCCGTTTAAGCCTTTTGGGCTTGTGATGAAGATGAGTCACCGAGGGTTGCAGGGAGACGATCCCACCGATTGCGCTATGGCTTTCTTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATCTCCAGAAGTTTTTGGGATTCTCGCCGCCGAGGGGCGCCGGCGCCGGCTTATTTCCGATGCCAGATCCCAAGACAAAC

Coding sequence (CDS)

ATGGCCACGATCCCTCTCTTCTCCTCCTTCCGATACTCCGACAGCCTCACGGTGGTCGGAATCTCCGTCTGCACCGCCGTCGTTTGCGAGGCCATCTCCTGGCTTCTCATCTACCGCACCAACTCCTACAAGACCCTCCGCTCCTCCATCGACAAAGCCGCTAAGAAGCTCGAGACCATGAAGACCGAGAGCTCCAAAATCTCCGTGAAAAAGTCCAAAACCAAGAAGATCGATCGCGTCGAGACCAGTCTGAAGGAATCGAATCGCGACCTCTCGCTCTTCAAGTTCAAGTCCGGCGCCGTCGTCGCCCTTGTTCTGTTCGTCGTCTTTGGATTGCTCAATTCGCTCTTCGAGGGCAAGGTCGTGGCCAAATTGCCGTTTAAGCCTTTTGGGCTTGTGATGAAGATGAGTCACCGAGGGTTGCAGGGAGACGATCCCACCGATTGCGCTATGGCTTTCTTGTACTTCCTCTGTTCGATTAGCATTAGGACCAATCTCCAGAAGTTTTTGGGATTCTCGCCGCCGAGGGGCGCCGGCGCCGGCTTATTTCCGATGCCAGATCCCAAGACAAAC

Protein sequence

MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGAGLFPMPDPKTN

Homology

[Close]

BLAST of MS022968.1 vs. NCBI nr
Match: XP_022151350.1 (calcium load-activated calcium channel-like [Momordica charantia])

HSP 1 Score: 365.2 bits (936), Expect = 3.5e-97
Identity = 190/191 (99.48%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. NCBI nr
Match: KAG6596248.1 (Calcium load-activated calcium channel, partial [Cucurbita argyrosperma subsp. sororia] >KAG7027791.1 Calcium load-activated calcium channel, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 361.7 bits (927), Expect = 3.9e-96
Identity = 187/191 (97.91%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTVVGISVCTA+VCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAIVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKI+VKKSKTKKIDRVETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. NCBI nr
Match: XP_038903426.1 (calcium load-activated calcium channel-like [Benincasa hispida])

HSP 1 Score: 359.4 bits (921), Expect = 1.9e-95
Identity = 186/191 (97.38%), Postives = 190/191 (99.48%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIP FSSFRYSDSLTVVGISVCTAVVCEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPFFSSFRYSDSLTVVGISVCTAVVCEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKI+VKKSKTKKIDRVETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. NCBI nr
Match: XP_004136557.1 (calcium load-activated calcium channel [Cucumis sativus])

HSP 1 Score: 358.6 bits (919), Expect = 3.3e-95
Identity = 184/191 (96.34%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTAV+CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKI+VKKSKTKKIDR+ETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. NCBI nr
Match: XP_008443026.1 (PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Cucumis melo] >KAA0043751.1 transmembrane and coiled-coil domain-containing protein 1 [Cucumis melo var. makuwa] >TYK25382.1 transmembrane and coiled-coil domain-containing protein 1 [Cucumis melo var. makuwa])

HSP 1 Score: 357.5 bits (916), Expect = 7.4e-95
Identity = 183/191 (95.81%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTV+GISVCTAV+CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKI+VKKSKTKKIDR+ETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. ExPASy Swiss-Prot
Match: Q3T0N3 (Calcium load-activated calcium channel OS=Bos taurus OX=9913 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 86/182 (47.25%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTESSKIS 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K E+   S
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLE-KKKETITES 61

Query: 69  VKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK +NRDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of MS022968.1 vs. ExPASy Swiss-Prot
Match: Q9UM00 (Calcium load-activated calcium channel OS=Homo sapiens OX=9606 GN=TMCO1 PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 86/182 (47.25%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTESSKIS 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K E+   S
Sbjct: 53  STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLE-KKKETITES 112

Query: 69  VKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK +NRDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 113 AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 172

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 173 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 232

[Close]

BLAST of MS022968.1 vs. ExPASy Swiss-Prot
Match: Q921L3 (Calcium load-activated calcium channel OS=Mus musculus OX=10090 GN=Tmco1 PE=1 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 86/182 (47.25%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTESSKIS 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K E+   S
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLE-KKKETITES 61

Query: 69  VKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK +NRDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of MS022968.1 vs. ExPASy Swiss-Prot
Match: C5HGF3 (Calcium load-activated calcium channel OS=Sus scrofa OX=9823 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 86/182 (47.25%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTESSKIS 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K E+   S
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLE-KKKETITES 61

Query: 69  VKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK +NRDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of MS022968.1 vs. ExPASy Swiss-Prot
Match: Q5R9B0 (Calcium load-activated calcium channel OS=Pongo abelii OX=9601 GN=TMCO1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 86/182 (47.25%), Postives = 121/182 (66.48%), Query Frame = 0


Query: 9   SFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKTESSKIS 68
           S  ++D+L +V ISVCTA++ E I+W+L+YRT+ YK L++ ++K +KKLE  K E+   S
Sbjct: 2   STMFADTLLIVFISVCTALLAEGITWVLVYRTDKYKRLKAEVEKQSKKLE-KKKETITES 61

Query: 69  VKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFK 128
             + + KKI+R E  LK +NRDLS+ + KS   +      + G+ NS+F+G+VVAKLPF 
Sbjct: 62  AGRQQKKKIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFT 121

Query: 129 PFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA--GAGLFPMP 188
           P   +  +SHR L GDD TDC+  FLY LC++SIR N+QK LG +P R A   AG F  P
Sbjct: 122 PLSYIQGLSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGP 181

[Close]

BLAST of MS022968.1 vs. ExPASy TrEMBL
Match: A0A6J1DAX6 (Calcium load-activated calcium channel OS=Momordica charantia OX=3673 GN=LOC111019313 PE=3 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 1.7e-97
Identity = 190/191 (99.48%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. ExPASy TrEMBL
Match: A0A0A0LGX0 (Calcium load-activated calcium channel OS=Cucumis sativus OX=3659 GN=Csa_3G799650 PE=3 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.6e-95
Identity = 184/191 (96.34%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSL+VVGISVCTAV+CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLSVVGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKI+VKKSKTKKIDR+ETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. ExPASy TrEMBL
Match: A0A5A7TQC2 (Calcium load-activated calcium channel OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005230 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.6e-95
Identity = 183/191 (95.81%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTV+GISVCTAV+CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKI+VKKSKTKKIDR+ETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. ExPASy TrEMBL
Match: A0A1S3B750 (Calcium load-activated calcium channel OS=Cucumis melo OX=3656 GN=LOC103486745 PE=3 SV=1)

HSP 1 Score: 357.5 bits (916), Expect = 3.6e-95
Identity = 183/191 (95.81%), Postives = 191/191 (100.00%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTV+GISVCTAV+CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVLGISVCTAVICEAISWVLIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT+SSKI+VKKSKTKKIDR+ETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDSSKITVKKSKTKKIDRIETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180
           VVAKLPFKPFGLVMKMSHRGLQG+DPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLQGEDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 GLFPMPDPKTN 192
           GLFPMPDPKTN
Sbjct: 181 GLFPMPDPKTN 191

[Close]

BLAST of MS022968.1 vs. ExPASy TrEMBL
Match: A0A6J1J172 (Calcium load-activated calcium channel OS=Cucurbita maxima OX=3661 GN=LOC111481756 PE=3 SV=1)

HSP 1 Score: 352.1 bits (902), Expect = 1.5e-93
Identity = 184/193 (95.34%), Postives = 190/193 (98.45%), Query Frame = 0


Query: 1   MATIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETM 60
           MATIPLFSSFRYSDSLTVVGISVCTAV+CEAISW+LIYRTNSYKTLRSSIDKAAKKLETM
Sbjct: 1   MATIPLFSSFRYSDSLTVVGISVCTAVICEAISWILIYRTNSYKTLRSSIDKAAKKLETM 60

Query: 61  KTESSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120
           KT++SKI+VKKSKTKKIDRVETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 61  KTDTSKINVKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 120

Query: 121 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG- 180
           VVAKLPFKPFGLVMKMSHRGL GDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAG 
Sbjct: 121 VVAKLPFKPFGLVMKMSHRGLLGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGAGA 180

Query: 181 -AGLFPMPDPKTN 192
            AGLFPMPDPKTN
Sbjct: 181 AAGLFPMPDPKTN 193

[Close]

BLAST of MS022968.1 vs. TAIR 10
Match: AT3G12030.1 (Protein of unknown function DUF106, transmembrane )

HSP 1 Score: 314.3 bits (804), Expect = 6.7e-86
Identity = 165/193 (85.49%), Postives = 179/193 (92.75%), Query Frame = 0


Query: 3   TIPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLETMKT 62
           TIPLF+SF+Y+DSLTVVGIS CTA+VCEAISW+LIYRT+SYK+L+ SIDKA KKLETMKT
Sbjct: 4   TIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKT 63

Query: 63  E--SSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 122
           E  SSK+S+KKSKTKKIDRVETSLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK
Sbjct: 64  ENPSSKLSIKKSKTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGK 123

Query: 123 VVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRGA-- 182
           VVAKLPF P  +V KMSHRGL+GDDPTDC+MAFLY LCSISIRTNLQKFLGFSPPRGA  
Sbjct: 124 VVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAG 183

Query: 183 GAGLFPMPDPKTN 192
             GLFPMPDPKTN
Sbjct: 184 AGGLFPMPDPKTN 196

[Close]

BLAST of MS022968.1 vs. TAIR 10
Match: AT5G06660.1 (Protein of unknown function DUF106, transmembrane )

HSP 1 Score: 306.6 bits (784), Expect = 1.4e-83
Identity = 164/196 (83.67%), Postives = 181/196 (92.35%), Query Frame = 0


Query: 1   MAT-IPLFSSFRYSDSLTVVGISVCTAVVCEAISWLLIYRTNSYKTLRSSIDKAAKKLET 60
           MAT IPLF+SF+Y+DSLTVVGIS CTA+VCEAISW+LIYRT+SYK+L+SSIDKA+KKLET
Sbjct: 1   MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60

Query: 61  MKTE--SSKISVKKSKTKKIDRVETSLKESNRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120
           MKT+  SSK++ KKSKTKKIDRVE+SLKES+RDLSLFKFKSGAVVALVLFVVFGLLNSLF
Sbjct: 61  MKTDNPSSKLTNKKSKTKKIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLF 120

Query: 121 EGKVVAKLPFKPFGLVMKMSHRGLQGDDPTDCAMAFLYFLCSISIRTNLQKFLGFSPPRG 180
           EGKVVAKLPF P  +V KMSHRGL+GDD TDC+MAFLY LCSISIRTNLQKFLGFSPPRG
Sbjct: 121 EGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRG 180

Query: 181 A--GAGLFPMPDPKTN 192
           A    GLFPMPDPKTN
Sbjct: 181 AAGAGGLFPMPDPKTN 196

The following BLAST results are available for this feature:

BLAST of MS022968.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151350.1	3.5e-97	99.48	calcium load-activated calcium channel-like [Momordica charantia]	[more]
KAG6596248.1	3.9e-96	97.91	Calcium load-activated calcium channel, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_038903426.1	1.9e-95	97.38	calcium load-activated calcium channel-like [Benincasa hispida]	[more]
XP_004136557.1	3.3e-95	96.34	calcium load-activated calcium channel [Cucumis sativus]	[more]
XP_008443026.1	7.4e-95	95.81	PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Cucumis me...	[more]

BLAST of MS022968.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3T0N3	1.0e-38	47.25	Calcium load-activated calcium channel OS=Bos taurus OX=9913 GN=TMCO1 PE=2 SV=1	[more]
Q9UM00	1.0e-38	47.25	Calcium load-activated calcium channel OS=Homo sapiens OX=9606 GN=TMCO1 PE=1 SV=...	[more]
Q921L3	1.0e-38	47.25	Calcium load-activated calcium channel OS=Mus musculus OX=10090 GN=Tmco1 PE=1 SV...	[more]
C5HGF3	1.0e-38	47.25	Calcium load-activated calcium channel OS=Sus scrofa OX=9823 GN=TMCO1 PE=2 SV=1	[more]
Q5R9B0	1.0e-38	47.25	Calcium load-activated calcium channel OS=Pongo abelii OX=9601 GN=TMCO1 PE=2 SV=...	[more]

BLAST of MS022968.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DAX6	1.7e-97	99.48	Calcium load-activated calcium channel OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A0A0LGX0	1.6e-95	96.34	Calcium load-activated calcium channel OS=Cucumis sativus OX=3659 GN=Csa_3G79965...	[more]
A0A5A7TQC2	3.6e-95	95.81	Calcium load-activated calcium channel OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3B750	3.6e-95	95.81	Calcium load-activated calcium channel OS=Cucumis melo OX=3656 GN=LOC103486745 P...	[more]
A0A6J1J172	1.5e-93	95.34	Calcium load-activated calcium channel OS=Cucurbita maxima OX=3661 GN=LOC1114817...	[more]

BLAST of MS022968.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G12030.1	6.7e-86	85.49	Protein of unknown function DUF106, transmembrane	[more]
AT5G06660.1	1.4e-83	83.67	Protein of unknown function DUF106, transmembrane	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..63
IPR002809	Integral membrane protein EMC3/TMCO1-like	SMART	SM01415	DUF106_2	coord: 14..174 e-value: 1.1E-38 score: 144.5
IPR002809	Integral membrane protein EMC3/TMCO1-like	PFAM	PF01956	EMC3_TMCO1	coord: 16..173 e-value: 1.4E-31 score: 109.5
IPR008559	Calcium load-activated calcium channel	PIRSF	PIRSF023322	UCP023322_TM_coiled-coil	coord: 5..191 e-value: 3.9E-76 score: 252.8
IPR008559	Calcium load-activated calcium channel	PANTHER	PTHR20917	PNAS-RELATED	coord: 1..189

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS022968	MS022968	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS022968.1-cds	MS022968.1-cds-scaffold357:217886..218458	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS022968.1	MS022968.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032469	endoplasmic reticulum calcium ion homeostasis
cellular_component	GO:0030176	integral component of endoplasmic reticulum membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0005262	calcium channel activity