MS022960.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS022960.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	60S ribosomal protein L21, putative, expressed
Location	scaffold357: 130744 .. 131825 (+)
Sequence length	492
RNA-Seq Expression	MS022960.1
Synteny	MS022960.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCGGCCGGCCATGGACTTAGGTCTCGTACCAGAGATCTCTTCGCGAGGCCCTTCAGGAAGAAGGGTTACATTGCTCTCACCACATACCTCAGGACCTACAAGATCGGCGACTATGTCGACATCAAGGTTAACGGCGCCGTTCACAAAGGTATGCCTCACAAGTTCTACCATGGCCGTACCGGTCGTGTATGGAACGTCACCAAGCGCGCCATCGGTGTCGAGATCAACAAGCAGGTTTTGCTTCGCCTCCTCTCCTTACTGATTGATTTTGTTTGCGGTTGTTTTATCAGATCCGTTTTGGTTCGTAGCATCTTTTTTTTTCTTTTTTGTTTTCAATCTGCTGCGATTTTTGGAATGTCTATGAATTTGACTGTTTAGGACGTGGATTGTGTTTGATTTTTATGACGACTCGTTTAGTTATAGGATGGAATGTGATGTTATCGATTCTGTTCGGATTGTATGTCTCTGGCTGCTGTTTTTATTCTGAGCATGTTGAACTTATTCTGCTAATTTCTCTAGCAATTCATTTGGTGGCTGTTTATTAAACTTTGTTTGTGGTTTTTGATGGCCAAACCACTATATTTTTGTTTGATGTAGCTGGAAATTCATACGATGCTCTACTTGTATGCGAATCATCGCTTATCTCACATCTTTGTAACCTTATGAGCCACCTGTGACTTGGTTGAGGATGTTCTTGGTTAGGTTTATTTTAGTTTCTGACCTAATCCAAAACCAAGCTCGACTGTGTTTTTAAAACAAAATATACACCATTCAGTTCTGGAATCTGTTTATCAAACTTTTAAATGATCTGTGTGAATTTTCAGGTGGGTAACAGGATAATTAAGAAGAGGATCCATGTCCGTGTTGAGCACGTGCAGCCGTCTCGATGCACCGAGGATTTCCGAATGAGGAAGGTGAACAATGATGCACTGAAGGCCGATGCCAAGGCTAGAGGTGAAGTCATTAGTACCAAGAGGCAACCAGAAGGCCCCAAGCCAGGGTTCATGGTTGAAGGTGCAACAATGGAGACTGTCACCCCCATTCCATACGATGTCGTCAATGATCTCAAGGGTGGTTAT

mRNA sequence

ATGCCGGCCGGCCATGGACTTAGGTCTCGTACCAGAGATCTCTTCGCGAGGCCCTTCAGGAAGAAGGGTTACATTGCTCTCACCACATACCTCAGGACCTACAAGATCGGCGACTATGTCGACATCAAGGTTAACGGCGCCGTTCACAAAGGTATGCCTCACAAGTTCTACCATGGCCGTACCGGTCGTGTATGGAACGTCACCAAGCGCGCCATCGGTGTCGAGATCAACAAGCAGGTGGGTAACAGGATAATTAAGAAGAGGATCCATGTCCGTGTTGAGCACGTGCAGCCGTCTCGATGCACCGAGGATTTCCGAATGAGGAAGGTGAACAATGATGCACTGAAGGCCGATGCCAAGGCTAGAGGTGAAGTCATTAGTACCAAGAGGCAACCAGAAGGCCCCAAGCCAGGGTTCATGGTTGAAGGTGCAACAATGGAGACTGTCACCCCCATTCCATACGATGTCGTCAATGATCTCAAGGGTGGTTAT

Coding sequence (CDS)

ATGCCGGCCGGCCATGGACTTAGGTCTCGTACCAGAGATCTCTTCGCGAGGCCCTTCAGGAAGAAGGGTTACATTGCTCTCACCACATACCTCAGGACCTACAAGATCGGCGACTATGTCGACATCAAGGTTAACGGCGCCGTTCACAAAGGTATGCCTCACAAGTTCTACCATGGCCGTACCGGTCGTGTATGGAACGTCACCAAGCGCGCCATCGGTGTCGAGATCAACAAGCAGGTGGGTAACAGGATAATTAAGAAGAGGATCCATGTCCGTGTTGAGCACGTGCAGCCGTCTCGATGCACCGAGGATTTCCGAATGAGGAAGGTGAACAATGATGCACTGAAGGCCGATGCCAAGGCTAGAGGTGAAGTCATTAGTACCAAGAGGCAACCAGAAGGCCCCAAGCCAGGGTTCATGGTTGAAGGTGCAACAATGGAGACTGTCACCCCCATTCCATACGATGTCGTCAATGATCTCAAGGGTGGTTAT

Protein sequence

MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGRTGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAKARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY

Homology

[Close]

BLAST of MS022960.1 vs. NCBI nr
Match: XP_022151455.1 (60S ribosomal protein L21-2 [Momordica charantia])

HSP 1 Score: 339.3 bits (869), Expect = 1.8e-89
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. NCBI nr
Match: XP_040384293.1 (60S ribosomal protein L21-2 [Oryza brachyantha])

HSP 1 Score: 325.5 bits (833), Expect = 2.7e-85
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGD+VD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTE+FR+RK+ ND LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGAT+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. NCBI nr
Match: XP_038906379.1 (60S ribosomal protein L21-1 [Benincasa hispida])

HSP 1 Score: 325.5 bits (833), Expect = 2.7e-85
Identity = 156/164 (95.12%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTE+FR+RKV ND LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEEFRLRKVKNDELKAEAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           A+GEVI TKRQPEGPKPGFMVEGA METVTPIPYDVVNDLKGGY
Sbjct: 121 AKGEVICTKRQPEGPKPGFMVEGALMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. NCBI nr
Match: XP_015632757.1 (60S ribosomal protein L21-2 [Oryza sativa Japonica Group] >EAY88484.1 hypothetical protein OsI_09955 [Oryza sativa Indica Group] >ABF93903.1 60S ribosomal protein L21, putative, expressed [Oryza sativa Japonica Group] >EAZ25530.1 hypothetical protein OsJ_09354 [Oryza sativa Japonica Group] >KAF2937211.1 hypothetical protein DAI22_03g033600 [Oryza sativa Japonica Group] >BAH91988.1 Os03g0141000 [Oryza sativa Japonica Group])

HSP 1 Score: 323.9 bits (829), Expect = 7.8e-85
Identity = 153/164 (93.29%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLR+RTRDLFARPFRKKGYI LTTYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTE+ R+RK+ ND LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGAT+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. NCBI nr
Match: RWR95953.1 (60S ribosomal protein L21-1 [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 323.6 bits (828), Expect = 1.0e-84
Identity = 154/164 (93.90%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLF+RPFRKKGYI+LTTYLRTY+IGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFSRPFRKKGYISLTTYLRTYRIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRC ED R+RKV ND LKA+AK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCAEDLRLRKVKNDKLKAEAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGAT+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. ExPASy Swiss-Prot
Match: Q9FDZ9 (60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 1.3e-82
Identity = 139/164 (84.76%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC E+F++RK  ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGE ISTKRQP+GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. ExPASy Swiss-Prot
Match: Q43291 (60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2)

HSP 1 Score: 301.6 bits (771), Expect = 5.4e-81
Identity = 137/164 (83.54%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC E+F++RK  ND LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           A GE ISTKRQP+GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. ExPASy Swiss-Prot
Match: O82574 (60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 2.9e-42
Identity = 91/158 (57.59%), Postives = 112/158 (70.89%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MP  +G R+RTR LFAR F+  G + L+TYL  +KIG+YVD+  N AVHKGMP K+YHGR
Sbjct: 1   MPHSYGYRARTRALFARAFKTNGPVHLSTYLTNFKIGEYVDVVGNAAVHKGMPFKYYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TG VWNVTKRAIGVEINK+V +RIIKKRIHVR++HV+ S C + F  R   ND +K DA 
Sbjct: 61  TGIVWNVTKRAIGVEINKRVRHRIIKKRIHVRIDHVKKSSCRDSFLKRVKENDKIKHDAH 120

Query: 121 -ARGEVISTKRQPEGPKPGFMV--EGATMETVTPIPYD 156
            A+  V STKR P  PK G ++  +G   ET   IPY+
Sbjct: 121 VAKLPVPSTKRLPVLPKAGAIIKSKGQVPETCHAIPYE 158

[Close]

BLAST of MS022960.1 vs. ExPASy Swiss-Prot
Match: Q02753 (60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RPL21A PE=1 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 5.0e-42
Identity = 82/157 (52.23%), Postives = 113/157 (71.97%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           M   HG RSRTR +F R FRK G + L+TYL+ YK+GD VDIK NG++ KGMPHKFY G+
Sbjct: 1   MGKSHGYRSRTRYMFQRDFRKHGAVHLSTYLKVYKVGDIVDIKANGSIQKGMPHKFYQGK 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TG V+NVTK ++GV INK VGNR ++KR+++RVEH++ S+C ++F  R   N A +A+AK
Sbjct: 61  TGVVYNVTKSSVGVIINKMVGNRYLEKRLNLRVEHIKHSKCRQEFLERVKANAAKRAEAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMV--EGATMETVTPIPYD 156
           A+G  +  KRQP  P+   +V  EG   +T+ P+PY+
Sbjct: 121 AQGVAVQLKRQPAQPRESRIVSTEGNVPQTLAPVPYE 157

[Close]

BLAST of MS022960.1 vs. ExPASy Swiss-Prot
Match: Q54X53 (60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 8.5e-42
Identity = 86/159 (54.09%), Postives = 105/159 (66.04%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MP   GLR+RTR LF+R FR  G +  TT+LRT+++GDYVDIK  G VHKGMPHKFYHGR
Sbjct: 1   MPHSFGLRARTRYLFSRGFRNHGLLQTTTFLRTFRLGDYVDIKATGNVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVT RA+GV INK+VG RII K+IHVR EHV+PS        R   N     +AK
Sbjct: 61  TGRVWNVTPRAVGVIINKRVGPRIIAKKIHVRTEHVKPSNSMAAHLKRIQENKKAVVEAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATME--TVTPIPYDVV 158
             G+ +  +R P  PK GF V     E   V P+ Y+++
Sbjct: 121 KAGKWVDVRRNPAAPKDGFFVNPRNTEFVEVKPVKYELL 159

[Close]

BLAST of MS022960.1 vs. ExPASy TrEMBL
Match: A0A6J1DB74 (60S ribosomal protein L21-2 OS=Momordica charantia OX=3673 GN=LOC111019384 PE=3 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 8.7e-90
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. ExPASy TrEMBL
Match: J3N389 (Uncharacterized protein OS=Oryza brachyantha OX=4533 GN=102715515 PE=3 SV=1)

HSP 1 Score: 325.5 bits (833), Expect = 1.3e-85
Identity = 154/164 (93.90%), Postives = 161/164 (98.17%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGD+VD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDHVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTE+FR+RK+ ND LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEEFRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGAT+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. ExPASy TrEMBL
Match: A0A0D9XKE3 (Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1)

HSP 1 Score: 325.1 bits (832), Expect = 1.7e-85
Identity = 154/164 (93.90%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLRSRTRDLFARPFRKKGYI LTTYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRSRTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTE+ R+RK+ ND LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGAT+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. ExPASy TrEMBL
Match: A3ADZ1 (Os03g0141000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0141000 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.8e-85
Identity = 153/164 (93.29%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLR+RTRDLFARPFRKKGYI LTTYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTE+ R+RK+ ND LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGAT+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. ExPASy TrEMBL
Match: A0A0D3FDM4 (Uncharacterized protein OS=Oryza barthii OX=65489 PE=3 SV=1)

HSP 1 Score: 323.9 bits (829), Expect = 3.8e-85
Identity = 153/164 (93.29%), Postives = 160/164 (97.56%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHGLR+RTRDLFARPFRKKGYI LTTYLRTYKIGDYVD+KVNGAVHKGMPHKFYHGR
Sbjct: 1   MPAGHGLRARTRDLFARPFRKKGYIPLTTYLRTYKIGDYVDVKVNGAVHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGRVWNVTKRAIGVEINKQVGNRII+KRIHVRVEHVQPSRCTE+ R+RK+ ND LKADAK
Sbjct: 61  TGRVWNVTKRAIGVEINKQVGNRIIRKRIHVRVEHVQPSRCTEELRLRKIKNDQLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGEVISTKRQPEGPKPGFMVEGAT+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGEVISTKRQPEGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. TAIR 10
Match: AT1G57660.1 (Translation protein SH3-like family protein )

HSP 1 Score: 307.0 bits (785), Expect = 9.2e-84
Identity = 139/164 (84.76%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC E+F++RK  ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGE ISTKRQP+GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. TAIR 10
Match: AT1G57860.1 (Translation protein SH3-like family protein )

HSP 1 Score: 307.0 bits (785), Expect = 9.2e-84
Identity = 139/164 (84.76%), Postives = 156/164 (95.12%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC E+F++RK  ND LKADAK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKQNDVLKADAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           ARGE ISTKRQP+GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ARGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. TAIR 10
Match: AT1G09590.1 (Translation protein SH3-like family protein )

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-82
Identity = 137/164 (83.54%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC E+F++RK  ND LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           A GE ISTKRQP+GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

[Close]

BLAST of MS022960.1 vs. TAIR 10
Match: AT1G09690.1 (Translation protein SH3-like family protein )

HSP 1 Score: 301.6 bits (771), Expect = 3.9e-82
Identity = 137/164 (83.54%), Postives = 154/164 (93.90%), Query Frame = 0


Query: 1   MPAGHGLRSRTRDLFARPFRKKGYIALTTYLRTYKIGDYVDIKVNGAVHKGMPHKFYHGR 60
           MPAGHG+R+RTRDLFARPFRKKGYI L+TYLRT+K+GDYVD+KVNGA+HKGMPHKFYHGR
Sbjct: 1   MPAGHGVRARTRDLFARPFRKKGYIPLSTYLRTFKVGDYVDVKVNGAIHKGMPHKFYHGR 60

Query: 61  TGRVWNVTKRAIGVEINKQVGNRIIKKRIHVRVEHVQPSRCTEDFRMRKVNNDALKADAK 120
           TGR+WNVTKRA+GVE+NKQ+GNRII+KRIHVRVEHVQ SRC E+F++RK  ND LKA AK
Sbjct: 61  TGRIWNVTKRAVGVEVNKQIGNRIIRKRIHVRVEHVQQSRCAEEFKLRKKKNDELKAAAK 120

Query: 121 ARGEVISTKRQPEGPKPGFMVEGATMETVTPIPYDVVNDLKGGY 165
           A GE ISTKRQP+GPKPGFMVEG T+ETVTPIPYDVVNDLKGGY
Sbjct: 121 ANGETISTKRQPKGPKPGFMVEGMTLETVTPIPYDVVNDLKGGY 164

The following BLAST results are available for this feature:

BLAST of MS022960.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022151455.1	1.8e-89	100.00	60S ribosomal protein L21-2 [Momordica charantia]	[more]
XP_040384293.1	2.7e-85	93.90	60S ribosomal protein L21-2 [Oryza brachyantha]	[more]
XP_038906379.1	2.7e-85	95.12	60S ribosomal protein L21-1 [Benincasa hispida]	[more]
XP_015632757.1	7.8e-85	93.29	60S ribosomal protein L21-2 [Oryza sativa Japonica Group] >EAY88484.1 hypothetic...	[more]
RWR95953.1	1.0e-84	93.90	60S ribosomal protein L21-1 [Cinnamomum micranthum f. kanehirae]	[more]

BLAST of MS022960.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FDZ9	1.3e-82	84.76	60S ribosomal protein L21-2 OS=Arabidopsis thaliana OX=3702 GN=RPL21E PE=2 SV=1	[more]
Q43291	5.4e-81	83.54	60S ribosomal protein L21-1 OS=Arabidopsis thaliana OX=3702 GN=RPL21A PE=2 SV=2	[more]
O82574	2.9e-42	57.59	60S ribosomal protein L21 OS=Cyanophora paradoxa OX=2762 GN=RPL21 PE=2 SV=1	[more]
Q02753	5.0e-42	52.23	60S ribosomal protein L21-A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	[more]
Q54X53	8.5e-42	54.09	60S ribosomal protein L21 OS=Dictyostelium discoideum OX=44689 GN=rpl21 PE=3 SV=...	[more]

BLAST of MS022960.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DB74	8.7e-90	100.00	60S ribosomal protein L21-2 OS=Momordica charantia OX=3673 GN=LOC111019384 PE=3 ...	[more]
J3N389	1.3e-85	93.90	Uncharacterized protein OS=Oryza brachyantha OX=4533 GN=102715515 PE=3 SV=1	[more]
A0A0D9XKE3	1.7e-85	93.90	Uncharacterized protein OS=Leersia perrieri OX=77586 PE=3 SV=1	[more]
A3ADZ1	3.8e-85	93.29	Os03g0141000 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0141000 PE...	[more]
A0A0D3FDM4	3.8e-85	93.29	Uncharacterized protein OS=Oryza barthii OX=65489 PE=3 SV=1	[more]

BLAST of MS022960.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G57660.1	9.2e-84	84.76	Translation protein SH3-like family protein	[more]
AT1G57860.1	9.2e-84	84.76	Translation protein SH3-like family protein	[more]
AT1G09590.1	3.9e-82	83.54	Translation protein SH3-like family protein	[more]
AT1G09690.1	3.9e-82	83.54	Translation protein SH3-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001147	Ribosomal protein L21e	PFAM	PF01157	Ribosomal_L21e	coord: 1..101 e-value: 3.7E-46 score: 155.1
IPR001147	Ribosomal protein L21e	PANTHER	PTHR20981	60S RIBOSOMAL PROTEIN L21	coord: 1..164
None	No IPR available	GENE3D	6.10.250.3260		coord: 99..156 e-value: 1.0E-22 score: 81.9
None	No IPR available	PANTHER	PTHR20981:SF21	60S RIBOSOMAL PROTEIN L21	coord: 1..164
IPR036948	Ribosomal protein L21 superfamily	GENE3D	2.30.30.70	Ribosomal protein L21	coord: 1..97 e-value: 2.0E-46 score: 158.0
IPR018259	Ribosomal protein L21e, conserved site	PROSITE	PS01171	RIBOSOMAL_L21E	coord: 37..62
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 3..99

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS022960	MS022960	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS022960.1-cds	MS022960.1-cds-scaffold357:130744..130980	CDS
MS022960.1-cds	MS022960.1-cds-scaffold357:131571..131825	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS022960.1	MS022960.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome