MS022959.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS022959.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	clathrin coat assembly protein AP180
Location	scaffold357: 125706 .. 125992 (-)
Sequence length	285
RNA-Seq Expression	MS022959.1
Synteny	MS022959.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGCGCCTTCGTCCGCACCTTCGATATCTACCTCGCCGAGATTTTGGACTGCTTTCTCATCGGGAAGCCCCATAAGCGCATGTCCGAGAGTGACCATGGACGGAATCGGCGATGTTGATTGATCGAATTTCTTACCGGCATAAATTTCCCGACATAGCAAATGCAACCAGGCCCATCGGACCGGCAAAATCGAACCGATTGGTTCAGTATTCGCTCCACGCCGTCGTCCAGGAGAGCTTCGAACTCTACCGGGACATCTCCCACGGCCGCGTGCTTCTTCTCGAA

mRNA sequence

CACCGCGCCTTCGTCCGCACCTTCGATATCTACCTCGCCGAGATTTTGGACTGCTTTCTCATCGGGAAGCCCCATAAGCGCATGTCCGAGAGTGACCATGGACGGAATCGGATGTTGATTGATCGAATTTCTTACCGGCATAAATTTCCCGACATAGCAAATGCAACCAGGCCCATCGGACCGGCAAAATCGAACCGATTGGTTCAGTATTCGCTCCACGCCGTCGTCCAGGAGAGCTTCGAACTCTACCGGGACATCTCCCACGGCCGCGTGCTTCTTCTCGAA

Coding sequence (CDS)

CACCGCGCCTTCGTCCGCACCTTCGATATCTACCTCGCCGAGATTTTGGACTGCTTTCTCATCGGGAAGCCCCATAAGCGCATGTCCGAGAGTGACCATGGACGGAATCGGATGTTGATTGATCGAATTTCTTACCGGCATAAATTTCCCGACATAGCAAATGCAACCAGGCCCATCGGACCGGCAAAATCGAACCGATTGGTTCAGTATTCGCTCCACGCCGTCGTCCAGGAGAGCTTCGAACTCTACCGGGACATCTCCCACGGCCGCGTGCTTCTTCTCGAA

Protein sequence

HRAFVRTFDIYLAEILDCFLIGKPHKRMSESDHGRNRMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE

Homology

[Close]

BLAST of MS022959.1 vs. NCBI nr
Match: XP_038887470.1 (clathrin coat assembly protein AP180 [Benincasa hispida])

HSP 1 Score: 114.0 bits (284), Expect = 7.1e-22
Identity = 65/111 (58.56%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRMS----ESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR +    ES HG  R            MLIDRI+
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTQRKIESYHGTTRRINEPIRDMKPAMLIDRIT 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYRDI+ G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDITDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. NCBI nr
Match: XP_008449479.1 (PREDICTED: clathrin coat assembly protein AP180 [Cucumis melo] >KAA0061650.1 clathrin coat assembly protein AP180 [Cucumis melo var. makuwa] >TYK05856.1 clathrin coat assembly protein AP180 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 65/111 (58.56%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTQRKTESYHATTRRINEPIRDMKPAMLIDRIT 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. NCBI nr
Match: XP_004140244.1 (clathrin coat assembly protein AP180 [Cucumis sativus] >KGN47964.1 hypothetical protein Csa_003702 [Cucumis sativus])

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-21
Identity = 65/111 (58.56%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTQRKAESYHATTRRINEPIRDMKPAMLIDRIT 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. NCBI nr
Match: XP_022952666.1 (clathrin coat assembly protein AP180 [Cucurbita moschata])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 65/111 (58.56%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR     +ES HG  R            MLIDRI 
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTERKTESFHGNTRRINEPIRDMKPAMLIDRIY 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLV  SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVLNSLHAVVQESFDLYRDISDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. NCBI nr
Match: XP_023553928.1 (clathrin coat assembly protein AP180-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 110.2 bits (274), Expect = 1.0e-20
Identity = 65/111 (58.56%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR     +ES HG  R            MLIDRI 
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTERKTESFHGNTRRINEPIRDMKPAMLIDRIY 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLV  SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVLNSLHAVVQESFDLYRDISDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. ExPASy Swiss-Prot
Match: Q9ZVN6 (Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana OX=3702 GN=AP180 PE=1 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.8e-18
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 3   AFVRTFDIYLAEILDCFLIGKPHK---------RMSESDHGRNR---------------- 62
           AFVRTF +YL E LDCFL GK  +         R+S +   R+R                
Sbjct: 142 AFVRTFALYLDERLDCFLTGKLQRRYTNREQTGRISTNSTTRSRFNPKAGIKSHEPAVRD 201

Query: 63  ----MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLL 96
               ML+D+I+Y  K  D A ATRP G AK+NRLV+ SL+AV+QESF+LYRDIS G  LL
Sbjct: 202 MKPVMLLDKITYWQKLLDRAIATRPTGDAKANRLVKMSLYAVMQESFDLYRDISDGLALL 261

[Close]

BLAST of MS022959.1 vs. ExPASy Swiss-Prot
Match: Q8GX47 (Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana OX=3702 GN=At4g02650 PE=2 SV=2)

HSP 1 Score: 52.0 bits (123), Expect = 4.3e-06
Identity = 36/128 (28.12%), Postives = 60/128 (46.88%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRMS------------ESDHG-------------- 60
           + AFVRT+ +YL E LD  + G+  K+ S            E DH               
Sbjct: 137 YSAFVRTYALYLDERLDYRMQGRRGKKKSGGGGGGDGDSGEEDDHRGTSNDIRSKAIVVK 196

Query: 61  -------RNRMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDIS 96
                  +   + +R+ +  +  D   A RP G AK+NR+V  +++ +V+ESF+LY +I+
Sbjct: 197 SKPVAEMKTEKIFNRVQHLQQLLDRFLACRPTGNAKNNRVVIVAMYPIVKESFQLYYNIT 256

[Close]

BLAST of MS022959.1 vs. ExPASy Swiss-Prot
Match: Q9LVD8 (Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana OX=3702 GN=At5g57200 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 1.4e-04
Identity = 32/106 (30.19%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 3   AFVRTFDIYLAEILDCFLIGK--------PHKRMSESDHGRNRM-----LIDRISYRHKF 62
           A+VRT+ ++L E L+C+ + K        P    + S   R RM     L++++    + 
Sbjct: 138 AWVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQLPALQQL 197

Query: 63  PDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
                  +P G A SN L+QY+L  V++ESF++Y  I+ G + L++
Sbjct: 198 LYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINLVD 243

[Close]

BLAST of MS022959.1 vs. ExPASy TrEMBL
Match: A0A5D3C685 (Clathrin coat assembly protein AP180 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00110 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 65/111 (58.56%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTQRKTESYHATTRRINEPIRDMKPAMLIDRIT 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. ExPASy TrEMBL
Match: A0A0A0KGJ5 (ENTH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421580 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 65/111 (58.56%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTQRKAESYHATTRRINEPIRDMKPAMLIDRIT 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. ExPASy TrEMBL
Match: A0A1S3BN17 (clathrin coat assembly protein AP180 OS=Cucumis melo OX=3656 GN=LOC103491352 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 7.6e-22
Identity = 65/111 (58.56%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR     +ES H   R            MLIDRI+
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTQRKTESYHATTRRINEPIRDMKPAMLIDRIT 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLVQ+SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. ExPASy TrEMBL
Match: A0A6J1GKV6 (clathrin coat assembly protein AP180 OS=Cucurbita moschata OX=3662 GN=LOC111455292 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.0e-21
Identity = 65/111 (58.56%), Postives = 70/111 (63.06%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRM----SESDHGRNR------------MLIDRIS 60
           + AFVRTF +YL E LDCFL GK  KR     +ES HG  R            MLIDRI 
Sbjct: 138 YTAFVRTFALYLDERLDCFLTGKLQKRFTERKTESFHGNTRRINEPIRDMKPAMLIDRIY 197

Query: 61  YRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           Y  K  D A ATRP GPAK NRLV  SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 YWQKLLDRAIATRPTGPAKGNRLVLNSLHAVVQESFDLYRDISDGLALLLD 248

[Close]

BLAST of MS022959.1 vs. ExPASy TrEMBL
Match: A0A6J1JET6 (clathrin coat assembly protein AP180-like OS=Cucurbita maxima OX=3661 GN=LOC111486264 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 6.5e-21
Identity = 61/105 (58.10%), Postives = 69/105 (65.71%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRMSESDHGRN----------RMLIDRISYRHKFP 60
           + AFVRTF +YL E LDCFL GK  KR ++    R            MLIDRISY  K  
Sbjct: 138 YTAFVRTFALYLDERLDCFLNGKLQKRYTQGKTSRRMNEPIRDMKPTMLIDRISYWQKLL 197

Query: 61  DIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
           D A ATRP G AK NRL+Q+SLHAVVQESF+LYRDIS G  LLL+
Sbjct: 198 DRAIATRPTGSAKRNRLIQHSLHAVVQESFDLYRDISDGLALLLD 242

[Close]

BLAST of MS022959.1 vs. TAIR 10
Match: AT1G05020.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 92.0 bits (227), Expect = 2.7e-19
Identity = 57/122 (46.72%), Postives = 71/122 (58.20%), Query Frame = 0


Query: 3   AFVRTFDIYLAEILDCFLIGKPHK---------RMSESDHGRNR---------------- 62
           AFVRTF +YL E LDCFL GK  +         R+S +   R+R                
Sbjct: 142 AFVRTFALYLDERLDCFLTGKLQRRYTNREQTGRISTNSTTRSRFNPKAGIKSHEPAVRD 201

Query: 63  ----MLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLL 96
               ML+D+I+Y  K  D A ATRP G AK+NRLV+ SL+AV+QESF+LYRDIS G  LL
Sbjct: 202 MKPVMLLDKITYWQKLLDRAIATRPTGDAKANRLVKMSLYAVMQESFDLYRDISDGLALL 261

[Close]

BLAST of MS022959.1 vs. TAIR 10
Match: AT4G02650.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 52.0 bits (123), Expect = 3.1e-07
Identity = 36/128 (28.12%), Postives = 60/128 (46.88%), Query Frame = 0


Query: 1   HRAFVRTFDIYLAEILDCFLIGKPHKRMS------------ESDHG-------------- 60
           + AFVRT+ +YL E LD  + G+  K+ S            E DH               
Sbjct: 137 YSAFVRTYALYLDERLDYRMQGRRGKKKSGGGGGGDGDSGEEDDHRGTSNDIRSKAIVVK 196

Query: 61  -------RNRMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDIS 96
                  +   + +R+ +  +  D   A RP G AK+NR+V  +++ +V+ESF+LY +I+
Sbjct: 197 SKPVAEMKTEKIFNRVQHLQQLLDRFLACRPTGNAKNNRVVIVAMYPIVKESFQLYYNIT 256

[Close]

BLAST of MS022959.1 vs. TAIR 10
Match: AT5G57200.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 47.0 bits (110), Expect = 9.9e-06
Identity = 32/106 (30.19%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 3   AFVRTFDIYLAEILDCFLIGK--------PHKRMSESDHGRNRM-----LIDRISYRHKF 62
           A+VRT+ ++L E L+C+ + K        P    + S   R RM     L++++    + 
Sbjct: 138 AWVRTYALFLEERLECYRVLKYDIEAERLPKASGAASKTHRTRMLSGEDLLEQLPALQQL 197

Query: 63  PDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
                  +P G A SN L+QY+L  V++ESF++Y  I+ G + L++
Sbjct: 198 LYRLIGCQPEGAAYSNYLIQYALALVLKESFKIYCAINDGIINLVD 243

[Close]

BLAST of MS022959.1 vs. TAIR 10
Match: AT4G25940.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 8.4e-05
Identity = 33/115 (28.70%), Postives = 56/115 (48.70%), Query Frame = 0


Query: 3   AFVRTFDIYLAEILDCFLI--------------GKPHKRM--SESDHGRNRMLIDRISYR 62
           A++RT+ ++L E L+C+ +              G   K +  + S   R RML D     
Sbjct: 138 AWIRTYALFLEERLECYRVLKYDIEAERLPKGSGASSKNVDFNASQTYRTRMLSDE-ELL 197

Query: 63  HKFPDIAN------ATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLLE 96
            + P +          +P G A SN L+QY+L  V++ESF++Y  I+ G + L++
Sbjct: 198 EQLPALQQLLYRLIGCQPEGSAYSNYLIQYALALVLKESFKIYCAINDGIINLVD 251

[Close]

BLAST of MS022959.1 vs. TAIR 10
Match: AT1G03050.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 2.4e-04
Identity = 20/61 (32.79%), Postives = 37/61 (60.66%), Query Frame = 0


Query: 35  RNRMLIDRISYRHKFPDIANATRPIGPAKSNRLVQYSLHAVVQESFELYRDISHGRVLLL 94
           +   +  RI +  +  D   A RP G A++NR+V  +L+ +V+ESF++Y D++    +L+
Sbjct: 199 KTEQIFIRIQHLQQLLDRFLACRPTGNARNNRVVIVALYPIVKESFQIYYDVTEIMGILI 258

Query: 95  E 96
           E
Sbjct: 259 E 259

The following BLAST results are available for this feature:

BLAST of MS022959.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038887470.1	7.1e-22	58.56	clathrin coat assembly protein AP180 [Benincasa hispida]	[more]
XP_008449479.1	1.6e-21	58.56	PREDICTED: clathrin coat assembly protein AP180 [Cucumis melo] >KAA0061650.1 cla...	[more]
XP_004140244.1	1.6e-21	58.56	clathrin coat assembly protein AP180 [Cucumis sativus] >KGN47964.1 hypothetical ...	[more]
XP_022952666.1	1.0e-20	58.56	clathrin coat assembly protein AP180 [Cucurbita moschata]	[more]
XP_023553928.1	1.0e-20	58.56	clathrin coat assembly protein AP180-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MS022959.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVN6	3.8e-18	46.72	Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana OX=3702 GN=AP180 PE...	[more]
Q8GX47	4.3e-06	28.13	Putative clathrin assembly protein At4g02650 OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LVD8	1.4e-04	30.19	Putative clathrin assembly protein At5g57200 OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of MS022959.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C685	7.6e-22	58.56	Clathrin coat assembly protein AP180 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KGJ5	7.6e-22	58.56	ENTH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421580 PE=4 S...	[more]
A0A1S3BN17	7.6e-22	58.56	clathrin coat assembly protein AP180 OS=Cucumis melo OX=3656 GN=LOC103491352 PE=...	[more]
A0A6J1GKV6	5.0e-21	58.56	clathrin coat assembly protein AP180 OS=Cucurbita moschata OX=3662 GN=LOC1114552...	[more]
A0A6J1JET6	6.5e-21	58.10	clathrin coat assembly protein AP180-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of MS022959.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05020.1	2.7e-19	46.72	ENTH/ANTH/VHS superfamily protein	[more]
AT4G02650.1	3.1e-07	28.13	ENTH/ANTH/VHS superfamily protein	[more]
AT5G57200.1	9.9e-06	30.19	ENTH/ANTH/VHS superfamily protein	[more]
AT4G25940.1	8.4e-05	28.70	ENTH/ANTH/VHS superfamily protein	[more]
AT1G03050.1	2.4e-04	32.79	ENTH/ANTH/VHS superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014712	ANTH domain superfamily	GENE3D	1.20.58.150	ANTH domain	coord: 6..95 e-value: 3.7E-5 score: 25.4
IPR011417	AP180 N-terminal homology (ANTH) domain	PFAM	PF07651	ANTH	coord: 2..93 e-value: 1.2E-7 score: 31.1
None	No IPR available	PANTHER	PTHR22951	CLATHRIN ASSEMBLY PROTEIN	coord: 3..94
None	No IPR available	PANTHER	PTHR22951:SF75	CLATHRIN COAT ASSEMBLY PROTEIN AP180	coord: 3..94
None	No IPR available	SUPERFAMILY	89009	GAT-like domain	coord: 39..95

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS022959	MS022959	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS022959.1-cds	MS022959.1-cds-scaffold357:125706..125879	CDS
MS022959.1-cds	MS022959.1-cds-scaffold357:125882..125992	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS022959.1	MS022959.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048268	clathrin coat assembly
cellular_component	GO:0030136	clathrin-coated vesicle
molecular_function	GO:0005545	1-phosphatidylinositol binding
molecular_function	GO:0030276	clathrin binding
molecular_function	GO:0005543	phospholipid binding