MS022267.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS022267.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Mitochondrial transcription termination factor family protein
Location	scaffold47: 2133938 .. 2134942 (-)
Sequence length	1005
RNA-Seq Expression	MS022267.1
Synteny	MS022267.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGTATCTTTCAGGGTTTATGGAAACTAGCGCCAGTCGAAATGGTACGAATATGCTGTGGTTCTTCAGGGATAAAGGGTTTGATGACAGAAGCATCGATAAGATGTTTAAAAAGTGCAGGCGTTTAGAAGCTGTGCACAAGGAAAGAGCTTCTGAAAACTGGGAATATTTGGAAAGAATCGGGATTCAAAAGAGGAAGCTCCCTTTTGTTGTTTCTAAGTGCCCTAAGATTCTAGCTCTTGGACTCCATGAGAAACTTGTCCCCATGGTTGAGTGCCTTGGGACACTCAGCACCAAGCCTCATGAAATTGCTTCAGCTATTGCCAAATTTCCTGGCATACTCTCCTATAGCGTTGAAGAGAAGCTTTGTCCGCTTTTGGCTTTCTTTCAAGCATTGGGGGTCCCTGAAAAGCAGCTTGGAAAAATGATTCTACTCAACCCTAGGCTTATTAGCTACAGCATTGAATCGAAGCTCATCGAAACTGTTGATTTTCTTGTTGGGCTTGGCCTTACGAAGGAGGGGATGCTTGGAAAAGTTATAGCAAAAAATCCATTTCTCATGGGTTATAGCATTGATAAAAGGCTCCGCCCTACATCGGAGTTTCTGAAATCAATTGGCCTAAAGGAGATGGATCTTCAGGCAGTTGCATTGAAATTTCCAGACATTTTGTGTAGGGATGTGGACAAAGTTTTGAGACCCAATTTGGTTTATCTAAGGAGATGTGGCTTTAAAGATGGAGAAGTAGTGTCTTTGGTGACTGGTTATCCTCCTATTCTGATCAAGAGCATTAAACATTCATTAGAACCTCGGATCAGATTTTTAGTCGAAATTATGGGAAGAAAACTTGAAGAAGTTGCCAAATATCCCGACTTCTTTAAGCATGGTTTGAAGAAAAGGCTCGAGTTGCGGCATAAATTGTTGATAGAGAAGAAAGTGGACTTTACCTTGAGTGAATTGCTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTA

mRNA sequence

ATGCTGTATCTTTCAGGGTTTATGGAAACTAGCGCCAGTCGAAATGGTACGAATATGCTGTGGTTCTTCAGGGATAAAGGGTTTGATGACAGAAGCATCGATAAGATGTTTAAAAAGTGCAGGCGTTTAGAAGCTGTGCACAAGGAAAGAGCTTCTGAAAACTGGGAATATTTGGAAAGAATCGGGATTCAAAAGAGGAAGCTCCCTTTTGTTGTTTCTAAGTGCCCTAAGATTCTAGCTCTTGGACTCCATGAGAAACTTGTCCCCATGGTTGAGTGCCTTGGGACACTCAGCACCAAGCCTCATGAAATTGCTTCAGCTATTGCCAAATTTCCTGGCATACTCTCCTATAGCGTTGAAGAGAAGCTTTGTCCGCTTTTGGCTTTCTTTCAAGCATTGGGGGTCCCTGAAAAGCAGCTTGGAAAAATGATTCTACTCAACCCTAGGCTTATTAGCTACAGCATTGAATCGAAGCTCATCGAAACTGTTGATTTTCTTGTTGGGCTTGGCCTTACGAAGGAGGGGATGCTTGGAAAAGTTATAGCAAAAAATCCATTTCTCATGGGTTATAGCATTGATAAAAGGCTCCGCCCTACATCGGAGTTTCTGAAATCAATTGGCCTAAAGGAGATGGATCTTCAGGCAGTTGCATTGAAATTTCCAGACATTTTGTGTAGGGATGTGGACAAAGTTTTGAGACCCAATTTGGTTTATCTAAGGAGATGTGGCTTTAAAGATGGAGAAGTAGTGTCTTTGGTGACTGGTTATCCTCCTATTCTGATCAAGAGCATTAAACATTCATTAGAACCTCGGATCAGATTTTTAGTCGAAATTATGGGAAGAAAACTTGAAGAAGTTGCCAAATATCCCGACTTCTTTAAGCATGGTTTGAAGAAAAGGCTCGAGTTGCGGCATAAATTGTTGATAGAGAAGAAAGTGGACTTTACCTTGAGTGAATTGCTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTA

Coding sequence (CDS)

ATGCTGTATCTTTCAGGGTTTATGGAAACTAGCGCCAGTCGAAATGGTACGAATATGCTGTGGTTCTTCAGGGATAAAGGGTTTGATGACAGAAGCATCGATAAGATGTTTAAAAAGTGCAGGCGTTTAGAAGCTGTGCACAAGGAAAGAGCTTCTGAAAACTGGGAATATTTGGAAAGAATCGGGATTCAAAAGAGGAAGCTCCCTTTTGTTGTTTCTAAGTGCCCTAAGATTCTAGCTCTTGGACTCCATGAGAAACTTGTCCCCATGGTTGAGTGCCTTGGGACACTCAGCACCAAGCCTCATGAAATTGCTTCAGCTATTGCCAAATTTCCTGGCATACTCTCCTATAGCGTTGAAGAGAAGCTTTGTCCGCTTTTGGCTTTCTTTCAAGCATTGGGGGTCCCTGAAAAGCAGCTTGGAAAAATGATTCTACTCAACCCTAGGCTTATTAGCTACAGCATTGAATCGAAGCTCATCGAAACTGTTGATTTTCTTGTTGGGCTTGGCCTTACGAAGGAGGGGATGCTTGGAAAAGTTATAGCAAAAAATCCATTTCTCATGGGTTATAGCATTGATAAAAGGCTCCGCCCTACATCGGAGTTTCTGAAATCAATTGGCCTAAAGGAGATGGATCTTCAGGCAGTTGCATTGAAATTTCCAGACATTTTGTGTAGGGATGTGGACAAAGTTTTGAGACCCAATTTGGTTTATCTAAGGAGATGTGGCTTTAAAGATGGAGAAGTAGTGTCTTTGGTGACTGGTTATCCTCCTATTCTGATCAAGAGCATTAAACATTCATTAGAACCTCGGATCAGATTTTTAGTCGAAATTATGGGAAGAAAACTTGAAGAAGTTGCCAAATATCCCGACTTCTTTAAGCATGGTTTGAAGAAAAGGCTCGAGTTGCGGCATAAATTGTTGATAGAGAAGAAAGTGGACTTTACCTTGAGTGAATTGCTGGAATGCAATCAAAAGAAGTTTATGATGAAAATGGGTTTGTTA

Protein sequence

MLYLSGFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKKVDFTLSELLECNQKKFMMKMGLL

Homology

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BLAST of MS022267.1 vs. NCBI nr
Match: XP_022135779.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Momordica charantia])

HSP 1 Score: 648.3 bits (1671), Expect = 3.7e-182
Identity = 327/330 (99.09%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 6   GFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQK 65
           GFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQK
Sbjct: 4   GFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQK 63

Query: 66  RKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCP 125
           RKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCP
Sbjct: 64  RKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCP 123

Query: 126 LLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNP 185
           LLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFL GLGLTKEGMLGKVIAKNP
Sbjct: 124 LLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGLGLTKEGMLGKVIAKNP 183

Query: 186 FLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFK 245
           FLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFK
Sbjct: 184 FLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFK 243

Query: 246 DGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRH 305
           DGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHG KKRLELR 
Sbjct: 244 DGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGFKKRLELRQ 303

Query: 306 KLLIEKKVDFTLSELLECNQKKFMMKMGLL 336
           KLLIEKKVDFTLSELLECNQKKFMMKMGLL
Sbjct: 304 KLLIEKKVDFTLSELLECNQKKFMMKMGLL 333

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BLAST of MS022267.1 vs. NCBI nr
Match: KAA0059582.1 (transcription termination factor MTERF6 [Cucumis melo var. makuwa] >TYK25788.1 transcription termination factor MTERF6 [Cucumis melo var. makuwa])

HSP 1 Score: 592.0 bits (1525), Expect = 3.1e-165
Identity = 296/335 (88.36%), Postives = 315/335 (94.03%), Query Frame = 0


Query: 1   MLYLSGFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLER 60
           ML LSGFME+SAS+NG  MLWFFRDKGFDDRSIDKMF+KCRRLE    ERASENWEYLER
Sbjct: 1   MLNLSGFMESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLER 60

Query: 61  IGIQKRKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVE 120
           IGIQKRKLP VVSKCPKILALGL EKLVPMVECL TLSTKPHEIA+AIAKFPGILSYSVE
Sbjct: 61  IGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVE 120

Query: 121 EKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKV 180
           EKLCPLLAFFQALGVPEK LGKMILLNPRLISYSIESKL+ETVDFL G+GLTKEG++GKV
Sbjct: 121 EKLCPLLAFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKV 180

Query: 181 IAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLR 240
           +AKNPFLMGYS+DKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR
Sbjct: 181 LAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLR 240

Query: 241 RCGFKDGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKR 300
             GFKDGE+VS+VTGYPP+LIKSI+HSLEPRIRFLVEIMGRKL+EVA+YPDFFKHGLKK+
Sbjct: 241 SRGFKDGEIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKK 300

Query: 301 LELRHKLLIEKKVDFTLSELLECNQKKFMMKMGLL 336
           LELRH+LL EK VDFTLSELLECNQKKFMMKMGLL
Sbjct: 301 LELRHRLLKEKNVDFTLSELLECNQKKFMMKMGLL 335

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BLAST of MS022267.1 vs. NCBI nr
Match: XP_038887558.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Benincasa hispida])

HSP 1 Score: 590.5 bits (1521), Expect = 9.1e-165
Identity = 292/328 (89.02%), Postives = 312/328 (95.12%), Query Frame = 0


Query: 8   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 67
           ME SASRNG  MLWFFRDKGFDDRSIDKMFK+CRRL+ + KERASENWEYLERIGIQ+RK
Sbjct: 1   MEVSASRNGNCMLWFFRDKGFDDRSIDKMFKRCRRLKDMQKERASENWEYLERIGIQRRK 60

Query: 68  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 127
           LP +VSKCPKILALGL EKLVPMVECL TLSTKP+EIASAIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSIVSKCPKILALGLQEKLVPMVECLATLSTKPNEIASAIAKFPGILSYSVEEKLCPLL 120

Query: 128 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFL 187
           AFFQALGVPEK LGKMILLNPRLISYSIESKL+ETVDF  G GL KEG++GKV+AKNPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFFAGFGLMKEGVIGKVLAKNPFL 180

Query: 188 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 247
           MGYS+DKRLRPTSEFL+SIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRRCGFKDG
Sbjct: 181 MGYSVDKRLRPTSEFLRSIGLNEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRCGFKDG 240

Query: 248 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKL 307
           E+VSLVTGYPP+LIKSI+HSLEPRIRFLVEIMGRKL+EVA+YPDFFKHGLKKRLELRH+L
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKRLELRHRL 300

Query: 308 LIEKKVDFTLSELLECNQKKFMMKMGLL 336
           L EK++DFTLSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKQMDFTLSELLECNQKKFMMKMGLL 328

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BLAST of MS022267.1 vs. NCBI nr
Match: XP_004144567.1 (transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sativus] >KGN43380.1 hypothetical protein Csa_020537 [Cucumis sativus])

HSP 1 Score: 585.1 bits (1507), Expect = 3.8e-163
Identity = 293/328 (89.33%), Postives = 310/328 (94.51%), Query Frame = 0


Query: 8   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 67
           ME+SASRNG  MLWFFRDKGFDDRSIDKMF+KCRRLE +  ERASENWEYLERIGIQKRK
Sbjct: 1   MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60

Query: 68  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 127
           LP VVSKCPKILALGL EKLVPMVECL TLSTKPHEIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 128 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFL 187
           AFFQALGVPEKQLGKMILLNPRLISYSIESKL+ETVDFL G+GLTKEG++GKV+AKNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 188 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 247
           MGYS+DKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR  GFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDG 240

Query: 248 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKL 307
           E+VSLVTGYPP+LIKSI+HSLEPRIRFLVEIMGRKLEEVA+YPDFFKHGLKK+LELRH+L
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300

Query: 308 LIEKKVDFTLSELLECNQKKFMMKMGLL 336
           L EK VDF LSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328

[Close]

BLAST of MS022267.1 vs. NCBI nr
Match: XP_008451174.1 (PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis melo])

HSP 1 Score: 582.0 bits (1499), Expect = 3.2e-162
Identity = 290/328 (88.41%), Postives = 309/328 (94.21%), Query Frame = 0


Query: 8   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 67
           ME+SAS+NG  MLWFFRDKGFDDRSIDKMF+KCRRLE    ERASENWEYLERIGIQKRK
Sbjct: 1   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 60

Query: 68  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 127
           LP VVSKCPKILALGL EKLVPMVECL TLSTKPHEIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 128 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFL 187
           AFFQALGVPEK LGKMILLNPRLISYSIESKL+ETVDFL G+GLTKEG++GKV+AKNPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 188 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 247
           MGYS+DKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR  GFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 240

Query: 248 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKL 307
           E+VS+VTGYPP+LIKSI+HSLEPRIRFLVEIMGRKL+EVA+YPDFFKHGLKK+LELRH+L
Sbjct: 241 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 300

Query: 308 LIEKKVDFTLSELLECNQKKFMMKMGLL 336
           L EK VDFTLSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFTLSELLECNQKKFMMKMGLL 328

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BLAST of MS022267.1 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 432.2 bits (1110), Expect = 5.4e-120
Identity = 206/321 (64.17%), Postives = 262/321 (81.62%), Query Frame = 0


Query: 15  NGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERI-GIQKRKLPFVVS 74
           N ++++WFFRDKGFDD SIDKM +KC++LE    + ASENW+YL  I GIQ+RKLP++VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 75  KCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLLAFFQAL 134
           +CPKIL L L E+L+PMVECL +L   P E+ASAI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 135 GVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFLMGYSID 194
           GVPE QLGKMIL NPRLISYSI++KL   V FL  LGL ++GM+GKV+ KNPFLMGYS+D
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 195 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEVVSL 254
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ CGF D ++ ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 255 VTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKK 314
           VTGYP ILIKS+K+SL+PRIRFLV++MGR ++EVA YP+FF HGLKK++E R KL+ +  
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 315 VDFTLSELLECNQKKFMMKMG 334
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of MS022267.1 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 6.4e-28
Identity = 72/291 (24.74%), Postives = 149/291 (51.20%), Query Frame = 0


Query: 39  KCRRLEAVHKERASENWEYLERIGIQKRKLPFVVSKCPKILALGLHEKLVPMVECLGTLS 98
           +C  L +   E      ++  ++G+ +     +V   PKI+     + +   +  L    
Sbjct: 304 RCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFG 363

Query: 99  TKPHEIASAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESK 158
               E+   +A  P ++  S+EE+  PL+ +F  LG+P++ + +++++ P L    +E  
Sbjct: 364 LSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKT 423

Query: 159 LIETVDFLVGLGLTKEGMLGKVIAKNPFLMGYSIDKRLRPTSEFLKS-IGLKEMDLQAVA 218
           +   V FL  +G+  E  +G ++ K P L+  S+ K++RP   FL +  G+ + D+  V 
Sbjct: 424 IAPKVRFLQEMGIPNEA-IGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVI 483

Query: 219 LKFPDILCRDVDKVLRPNLVYLRRCGFKDGEVVSLVTGYPPILIKSIKHSLEPRIRFLVE 278
              P +L   +   L PN+ Y    G +  ++  ++  +P +L  ++  +L P+ R+L  
Sbjct: 484 AMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYLRR 543

Query: 279 IMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKKVDFTLSELLECNQKKF 329
            M R L+++ ++P FF + L++R+  RH +++E +V+F L  +L C  ++F
Sbjct: 544 TMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF 592

[Close]

BLAST of MS022267.1 vs. ExPASy Swiss-Prot
Match: B6TGN4 (Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MTERF4 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-26
Identity = 71/313 (22.68%), Postives = 155/313 (49.52%), Query Frame = 0


Query: 56  EYLERIGIQKRKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGIL 115
           +YL ++G+++  LP ++ + P++L   +   L P+V+ L  +  +P ++   + ++P +L
Sbjct: 140 DYLGKLGVRRDALPDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPTDVPRVLERYPELL 199

Query: 116 SYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEG 175
            + +E  +   +A+   +GV  +Q+G +I   P ++   +   +   V+ L G+GL +  
Sbjct: 200 GFKLEGTMSTSVAYLVGIGVGRRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRLA 259

Query: 176 MLGKVIAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDIL----------- 235
            + ++I K P+++G+ + ++++P  E L  IG+++  L ++ +++PD+L           
Sbjct: 260 -IARIIEKKPYVLGFGLQEKVKPNIEALVDIGVRKEALASIVMQYPDVLGLELRDKLVAQ 319

Query: 236 -----------CRDVDKVLR--------------PNLVYLRRCGFKDGEVVSLVTGYPPI 295
                        D  +VL                ++ +L  CGF   +V  +V   P +
Sbjct: 320 QSLFESSILVSREDFGRVLERMPQAISLGRAAVLKHVNFLTACGFMLSQVSKMVVACPQL 379

Query: 296 LIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKKVDFTLSE 333
           L  +I   +     +    M R LEE+ ++P FF +G++  +  RH+++  K +  +L+ 
Sbjct: 380 LALNI-DIMRMNFEYFKNEMERDLEELVEFPAFFTYGIESTVRPRHEMVSRKGLTCSLAW 439

[Close]

BLAST of MS022267.1 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 2.7e-26
Identity = 71/313 (22.68%), Postives = 154/313 (49.20%), Query Frame = 0


Query: 56  EYLERIGIQKRKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGIL 115
           +YL ++G+++  LP ++ + P++L   +   L P+V+ L  +  +PH++   + ++P +L
Sbjct: 149 DYLGKLGVRQDALPDLLRRYPQVLHASVVVDLAPVVKYLQGMDVRPHDVPRVLERYPELL 208

Query: 116 SYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEG 175
            + +E  +   +A+   +GV  +Q+G +I   P ++   +   +   V+ L G+GL +  
Sbjct: 209 GFKLEGTMSTSIAYLVGIGVARRQVGSVITRFPEVLGMRVGKIIKPFVEHLEGIGLQRLA 268

Query: 176 MLGKVIAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDIL----------- 235
            + ++I K P+++G+ ++ +++P  E L   G+++  L  +  ++PDIL           
Sbjct: 269 -IARIIEKKPYVLGFGLEDKVKPNIEALLEFGVRKEALAFIVAQYPDILGIELRDKLATQ 328

Query: 236 -----------CRDVDKVLR--------------PNLVYLRRCGFKDGEVVSLVTGYPPI 295
                        D  +V+                ++ +L  CGF   +V  +V   P +
Sbjct: 329 QSLFESSILVSSEDFGRVIERMPQAISLGRTAVLKHVNFLTSCGFLLSQVSKMVVACPQL 388

Query: 296 LIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKKVDFTLSE 333
           L  ++   ++    +    M R LEE+ ++P FF +GL+  +  RH+++ +K    +L+ 
Sbjct: 389 LALNM-DIMKMSFEYFQNEMERDLEELVEFPAFFTYGLESTVRPRHEMVAKKGFTCSLAW 448

[Close]

BLAST of MS022267.1 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.8e-26
Identity = 78/283 (27.56%), Postives = 146/283 (51.59%), Query Frame = 0


Query: 57  YLERIGIQKRKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILS 116
           YL  +G+   ++  +  K        L  K+ P+VE L  L     +I + + K P I  
Sbjct: 202 YLLDLGLNLEQIKTITRKFAAFPYYSLDGKIKPVVEFLLDLGIPKSDIPTILCKRPQICG 261

Query: 117 YSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGM 176
            S+ + L P +AF + LG+ + Q  K+I   P +++YS   KL  TV+FL   GLT+E  
Sbjct: 262 ISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAILTYS-RQKLTSTVEFLSQTGLTEE-Q 321

Query: 177 LGKVIAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNL 236
           +G+++ + P +M YS++ +LRPT E+ +S+    +D+  +  + P      ++  L+P  
Sbjct: 322 IGRILTRCPNIMSYSVEDKLRPTMEYFRSL---NVDVAVLLHRCPQTFGLSIESNLKPVT 381

Query: 237 VYLRRCGFKDGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHG 296
            +    GF   E+  +++ Y  +   S+K ++ P+  +  + M     E+ K+P FF + 
Sbjct: 382 EFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWDYF-QTMDYPKSELVKFPQFFGYS 441

Query: 297 LKKRLELRHKLLIEKKVDFTLSELLECN-------QKKFMMKM 333
           L++R++ R++L+    V   L+++L  +        KK MMK+
Sbjct: 442 LQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVVKKKMMKL 478

[Close]

BLAST of MS022267.1 vs. ExPASy TrEMBL
Match: A0A6J1C2G0 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Momordica charantia OX=3673 GN=LOC111007658 PE=3 SV=1)

HSP 1 Score: 648.3 bits (1671), Expect = 1.8e-182
Identity = 327/330 (99.09%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 6   GFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQK 65
           GFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQK
Sbjct: 4   GFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQK 63

Query: 66  RKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCP 125
           RKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCP
Sbjct: 64  RKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCP 123

Query: 126 LLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNP 185
           LLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFL GLGLTKEGMLGKVIAKNP
Sbjct: 124 LLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGLGLTKEGMLGKVIAKNP 183

Query: 186 FLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFK 245
           FLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFK
Sbjct: 184 FLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFK 243

Query: 246 DGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRH 305
           DGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHG KKRLELR 
Sbjct: 244 DGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGFKKRLELRQ 303

Query: 306 KLLIEKKVDFTLSELLECNQKKFMMKMGLL 336
           KLLIEKKVDFTLSELLECNQKKFMMKMGLL
Sbjct: 304 KLLIEKKVDFTLSELLECNQKKFMMKMGLL 333

[Close]

BLAST of MS022267.1 vs. ExPASy TrEMBL
Match: A0A5A7UUK2 (Transcription termination factor MTERF6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold640G00330 PE=3 SV=1)

HSP 1 Score: 592.0 bits (1525), Expect = 1.5e-165
Identity = 296/335 (88.36%), Postives = 315/335 (94.03%), Query Frame = 0


Query: 1   MLYLSGFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLER 60
           ML LSGFME+SAS+NG  MLWFFRDKGFDDRSIDKMF+KCRRLE    ERASENWEYLER
Sbjct: 1   MLNLSGFMESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLER 60

Query: 61  IGIQKRKLPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVE 120
           IGIQKRKLP VVSKCPKILALGL EKLVPMVECL TLSTKPHEIA+AIAKFPGILSYSVE
Sbjct: 61  IGIQKRKLPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVE 120

Query: 121 EKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKV 180
           EKLCPLLAFFQALGVPEK LGKMILLNPRLISYSIESKL+ETVDFL G+GLTKEG++GKV
Sbjct: 121 EKLCPLLAFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKV 180

Query: 181 IAKNPFLMGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLR 240
           +AKNPFLMGYS+DKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR
Sbjct: 181 LAKNPFLMGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLR 240

Query: 241 RCGFKDGEVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKR 300
             GFKDGE+VS+VTGYPP+LIKSI+HSLEPRIRFLVEIMGRKL+EVA+YPDFFKHGLKK+
Sbjct: 241 SRGFKDGEIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKK 300

Query: 301 LELRHKLLIEKKVDFTLSELLECNQKKFMMKMGLL 336
           LELRH+LL EK VDFTLSELLECNQKKFMMKMGLL
Sbjct: 301 LELRHRLLKEKNVDFTLSELLECNQKKFMMKMGLL 335

[Close]

BLAST of MS022267.1 vs. ExPASy TrEMBL
Match: A0A0A0K108 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029940 PE=3 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 1.9e-163
Identity = 293/328 (89.33%), Postives = 310/328 (94.51%), Query Frame = 0


Query: 8   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 67
           ME+SASRNG  MLWFFRDKGFDDRSIDKMF+KCRRLE +  ERASENWEYLERIGIQKRK
Sbjct: 1   MESSASRNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDMQNERASENWEYLERIGIQKRK 60

Query: 68  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 127
           LP VVSKCPKILALGL EKLVPMVECL TLSTKPHEIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 128 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFL 187
           AFFQALGVPEKQLGKMILLNPRLISYSIESKL+ETVDFL G+GLTKEG++GKV+AKNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 188 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 247
           MGYS+DKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR  GFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRYNLDYLRSRGFKDG 240

Query: 248 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKL 307
           E+VSLVTGYPP+LIKSI+HSLEPRIRFLVEIMGRKLEEVA+YPDFFKHGLKK+LELRH+L
Sbjct: 241 EIVSLVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLEEVAEYPDFFKHGLKKKLELRHRL 300

Query: 308 LIEKKVDFTLSELLECNQKKFMMKMGLL 336
           L EK VDF LSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFALSELLECNQKKFMMKMGLL 328

[Close]

BLAST of MS022267.1 vs. ExPASy TrEMBL
Match: A0A1S3BQA2 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucumis melo OX=3656 GN=LOC103492550 PE=3 SV=1)

HSP 1 Score: 582.0 bits (1499), Expect = 1.6e-162
Identity = 290/328 (88.41%), Postives = 309/328 (94.21%), Query Frame = 0


Query: 8   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 67
           ME+SAS+NG  MLWFFRDKGFDDRSIDKMF+KCRRLE    ERASENWEYLERIGIQKRK
Sbjct: 1   MESSASQNGNCMLWFFRDKGFDDRSIDKMFRKCRRLEDTQNERASENWEYLERIGIQKRK 60

Query: 68  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 127
           LP VVSKCPKILALGL EKLVPMVECL TLSTKPHEIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILALGLQEKLVPMVECLATLSTKPHEIAAAIAKFPGILSYSVEEKLCPLL 120

Query: 128 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFL 187
           AFFQALGVPEK LGKMILLNPRLISYSIESKL+ETVDFL G+GLTKEG++GKV+AKNPFL
Sbjct: 121 AFFQALGVPEKHLGKMILLNPRLISYSIESKLVETVDFLAGVGLTKEGVIGKVLAKNPFL 180

Query: 188 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 247
           MGYS+DKRLRPT EFLKSIGL +MDLQAVALKFPDILCRDVDKVLR NL YLR  GFKDG
Sbjct: 181 MGYSVDKRLRPTVEFLKSIGLNKMDLQAVALKFPDILCRDVDKVLRSNLDYLRSRGFKDG 240

Query: 248 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKL 307
           E+VS+VTGYPP+LIKSI+HSLEPRIRFLVEIMGRKL+EVA+YPDFFKHGLKK+LELRH+L
Sbjct: 241 EIVSMVTGYPPVLIKSIQHSLEPRIRFLVEIMGRKLDEVAEYPDFFKHGLKKKLELRHRL 300

Query: 308 LIEKKVDFTLSELLECNQKKFMMKMGLL 336
           L EK VDFTLSELLECNQKKFMMKMGLL
Sbjct: 301 LKEKNVDFTLSELLECNQKKFMMKMGLL 328

[Close]

BLAST of MS022267.1 vs. ExPASy TrEMBL
Match: A0A6J1I081 (transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111468249 PE=3 SV=1)

HSP 1 Score: 572.0 bits (1473), Expect = 1.6e-159
Identity = 286/328 (87.20%), Postives = 304/328 (92.68%), Query Frame = 0


Query: 8   METSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERIGIQKRK 67
           ME S SRNGT+MLWFFRDKGFDD SIDKMFKKCRRLE +  ERA+ENWEYLE IGIQKRK
Sbjct: 1   MEISGSRNGTSMLWFFRDKGFDDGSIDKMFKKCRRLEGMQNERAAENWEYLEGIGIQKRK 60

Query: 68  LPFVVSKCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLL 127
           LP VVSKCPKIL LGL EK+ PMVECL TL+TKP EIA+AIAKFPGILSYSVEEKLCPLL
Sbjct: 61  LPSVVSKCPKILVLGLQEKIAPMVECLATLTTKPREIATAIAKFPGILSYSVEEKLCPLL 120

Query: 128 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFL 187
           AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFL G+GLTKEGM+GKV+ KNPFL
Sbjct: 121 AFFQALGVPEKQLGKMILLNPRLISYSIESKLIETVDFLAGVGLTKEGMIGKVLVKNPFL 180

Query: 188 MGYSIDKRLRPTSEFLKSIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDG 247
           +GYS+ KRLRPT EFLKSIGL EMDLQAVALKFPDILCRDVDKVLRPNL YLRR GFKDG
Sbjct: 181 IGYSVHKRLRPTFEFLKSIGLSEMDLQAVALKFPDILCRDVDKVLRPNLDYLRRRGFKDG 240

Query: 248 EVVSLVTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKL 307
           E+VSLVTGYPPILIKSI+HSLEPRIRFLVEIMGR L+EVA+YP+FFKHGLKKRLELRH+L
Sbjct: 241 EIVSLVTGYPPILIKSIQHSLEPRIRFLVEIMGRTLDEVAEYPEFFKHGLKKRLELRHRL 300

Query: 308 LIEKKVDFTLSELLECNQKKFMMKMGLL 336
           L EK +DFTLSELLECNQKKFMMKM LL
Sbjct: 301 LKEKTMDFTLSELLECNQKKFMMKMSLL 328

[Close]

BLAST of MS022267.1 vs. TAIR 10
Match: AT4G38160.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 432.2 bits (1110), Expect = 3.9e-121
Identity = 206/321 (64.17%), Postives = 262/321 (81.62%), Query Frame = 0


Query: 15  NGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERI-GIQKRKLPFVVS 74
           N ++++WFFRDKGFDD SIDKM +KC++LE    + ASENW+YL  I GIQ+RKLP++VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 75  KCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLLAFFQAL 134
           +CPKIL L L E+L+PMVECL +L   P E+ASAI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 135 GVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFLMGYSID 194
           GVPE QLGKMIL NPRLISYSI++KL   V FL  LGL ++GM+GKV+ KNPFLMGYS+D
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 195 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEVVSL 254
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ CGF D ++ ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 255 VTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKK 314
           VTGYP ILIKS+K+SL+PRIRFLV++MGR ++EVA YP+FF HGLKK++E R KL+ +  
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 315 VDFTLSELLECNQKKFMMKMG 334
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of MS022267.1 vs. TAIR 10
Match: AT4G38160.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 432.2 bits (1110), Expect = 3.9e-121
Identity = 206/321 (64.17%), Postives = 262/321 (81.62%), Query Frame = 0


Query: 15  NGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERI-GIQKRKLPFVVS 74
           N ++++WFFRDKGFDD SIDKM +KC++LE    + ASENW+YL  I GIQ+RKLP++VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 75  KCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLLAFFQAL 134
           +CPKIL L L E+L+PMVECL +L   P E+ASAI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 135 GVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFLMGYSID 194
           GVPE QLGKMIL NPRLISYSI++KL   V FL  LGL ++GM+GKV+ KNPFLMGYS+D
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 195 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEVVSL 254
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ CGF D ++ ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 255 VTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKK 314
           VTGYP ILIKS+K+SL+PRIRFLV++MGR ++EVA YP+FF HGLKK++E R KL+ +  
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 315 VDFTLSELLECNQKKFMMKMG 334
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of MS022267.1 vs. TAIR 10
Match: AT4G38160.3 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 432.2 bits (1110), Expect = 3.9e-121
Identity = 206/321 (64.17%), Postives = 262/321 (81.62%), Query Frame = 0


Query: 15  NGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENWEYLERI-GIQKRKLPFVVS 74
           N ++++WFFRDKGFDD SIDKM +KC++LE    + ASENW+YL  I GIQ+RKLP++VS
Sbjct: 5   NTSSIMWFFRDKGFDDPSIDKMLRKCKQLEKAQSDVASENWDYLSNIVGIQERKLPYIVS 64

Query: 75  KCPKILALGLHEKLVPMVECLGTLSTKPHEIASAIAKFPGILSYSVEEKLCPLLAFFQAL 134
           +CPKIL L L E+L+PMVECL +L   P E+ASAI KFP ILS+SVEEKLCPLLAFFQAL
Sbjct: 65  RCPKILTLRLDERLIPMVECLSSLGRNPREVASAITKFPPILSHSVEEKLCPLLAFFQAL 124

Query: 135 GVPEKQLGKMILLNPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFLMGYSID 194
           GVPE QLGKMIL NPRLISYSI++KL   V FL  LGL ++GM+GKV+ KNPFLMGYS+D
Sbjct: 125 GVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKVLVKNPFLMGYSVD 184

Query: 195 KRLRPTSEFLK-SIGLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEVVSL 254
           KRLRPT+EFLK S+GL E  +++V + FP +LCRDV+K+L+PN  YL+ CGF D ++ ++
Sbjct: 185 KRLRPTTEFLKSSVGLSEDGIKSVVMNFPQLLCRDVNKILKPNYDYLKECGFGDSQIATM 244

Query: 255 VTGYPPILIKSIKHSLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKK 314
           VTGYP ILIKS+K+SL+PRIRFLV++MGR ++EVA YP+FF HGLKK++E R KL+ +  
Sbjct: 245 VTGYPQILIKSVKNSLQPRIRFLVQVMGRGMDEVASYPEFFHHGLKKKVESRFKLVKKNN 304

Query: 315 VDFTLSELLECNQKKFMMKMG 334
           +D +L E+L+CN KKF  K G
Sbjct: 305 IDCSLREMLDCNTKKFHEKFG 325

[Close]

BLAST of MS022267.1 vs. TAIR 10
Match: AT1G78930.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 130.2 bits (326), Expect = 3.1e-30
Identity = 104/362 (28.73%), Postives = 171/362 (47.24%), Query Frame = 0


Query: 4   LSGFMETSASRNGTNMLWFFRDKGFDDRSIDKMFKKCRRLEAVHKERASENW-EYLERIG 63
           LS F +  A R G +ML      G  D S   + +   RL  + +E   +   E+LE IG
Sbjct: 222 LSFFEKIEARRGGLDML------GSVDASFRFLLESFPRLLLLSEENDMKPMVEFLESIG 281

Query: 64  IQKRKLPFVVSKCPKILALGLHEKLVPMV-ECLGTLSTKPHEIASAIAKFPGILSYSVEE 123
           I K  L  V+   P I+ LG  E++   V   +  +S    +    + K+P ILS S++E
Sbjct: 282 IPKYCLGKVLLLYPPIM-LGKTEEIKRRVATAMEKVSVVNKDSGKLLLKYPWILSPSIQE 341

Query: 124 KLCPLLAFFQA-----------------------------------LGVPEKQLGKMILL 183
               + +FF +                                   LGV +K++GK+I  
Sbjct: 342 NYSHIGSFFYSESVLKMDIDHAIRRWPLLLGCSASNMEMMVKEFDKLGVRDKRMGKVIPK 401

Query: 184 NPRLISYSIESKLIETVDFLVGLGLTKEGMLGKVIAKNPFLMGYSIDKRLRPTSEFLKSI 243
            P+L+      + ++ V FL  LG  KE ++G+++ + P + G SI+K L+    FL   
Sbjct: 402 MPQLLLCK-PQEFLKVVCFLEDLGFQKE-IVGQILCRCPEIFGCSIEKTLQKKLIFLTRF 461

Query: 244 GLKEMDLQAVALKFPDILCRDVDKVLRPNLVYLRRCGFKDGEVVSLVTGYPPILIKSIKH 303
           G+       +  K+P+ L  D DK + P L YL   G  + E+  ++  + PIL  SI  
Sbjct: 462 GVSTTHFPRIIKKYPEFLIYDADKTVLPRLKYLMEIGISEREIAFMIRKFSPILGYSIDK 521

Query: 304 SLEPRIRFLVEIMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKKVDFTLSELLECNQK 329
            L P+  FLV  M + + EV +YP +F + L+KR++ R ++L  + ++ TL E+L  N +
Sbjct: 522 VLRPKFEFLVNSMEKPVREVIEYPRYFSYSLEKRIKPRFRVLKGRNIECTLQEMLGKNDE 574

[Close]

BLAST of MS022267.1 vs. TAIR 10
Match: AT2G21710.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 126.3 bits (316), Expect = 4.5e-29
Identity = 72/291 (24.74%), Postives = 149/291 (51.20%), Query Frame = 0


Query: 39  KCRRLEAVHKERASENWEYLERIGIQKRKLPFVVSKCPKILALGLHEKLVPMVECLGTLS 98
           +C  L +   E      ++  ++G+ +     +V   PKI+     + +   +  L    
Sbjct: 304 RCPELLSFSMEEVKSRVDFFLKMGMNQNDFGTMVYDYPKIIGFFSFQVMEKKINYLKEFG 363

Query: 99  TKPHEIASAIAKFPGILSYSVEEKLCPLLAFFQALGVPEKQLGKMILLNPRLISYSIESK 158
               E+   +A  P ++  S+EE+  PL+ +F  LG+P++ + +++++ P L    +E  
Sbjct: 364 LSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKT 423

Query: 159 LIETVDFLVGLGLTKEGMLGKVIAKNPFLMGYSIDKRLRPTSEFLKS-IGLKEMDLQAVA 218
           +   V FL  +G+  E  +G ++ K P L+  S+ K++RP   FL +  G+ + D+  V 
Sbjct: 424 IAPKVRFLQEMGIPNEA-IGNMLVKFPSLLTNSLYKKIRPVVIFLLTRAGVTQKDIGKVI 483

Query: 219 LKFPDILCRDVDKVLRPNLVYLRRCGFKDGEVVSLVTGYPPILIKSIKHSLEPRIRFLVE 278
              P +L   +   L PN+ Y    G +  ++  ++  +P +L  ++  +L P+ R+L  
Sbjct: 484 AMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNV-DNLRPKYRYLRR 543

Query: 279 IMGRKLEEVAKYPDFFKHGLKKRLELRHKLLIEKKVDFTLSELLECNQKKF 329
            M R L+++ ++P FF + L++R+  RH +++E +V+F L  +L C  ++F
Sbjct: 544 TMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDEEF 592

The following BLAST results are available for this feature:

BLAST of MS022267.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135779.1	3.7e-182	99.09	transcription termination factor MTERF6, chloroplastic/mitochondrial [Momordica ...	[more]
KAA0059582.1	3.1e-165	88.36	transcription termination factor MTERF6 [Cucumis melo var. makuwa] >TYK25788.1 t...	[more]
XP_038887558.1	9.1e-165	89.02	transcription termination factor MTERF6, chloroplastic/mitochondrial [Benincasa ...	[more]
XP_004144567.1	3.8e-163	89.33	transcription termination factor MTERF6, chloroplastic/mitochondrial [Cucumis sa...	[more]
XP_008451174.1	3.2e-162	88.41	PREDICTED: transcription termination factor MTERF6, chloroplastic/mitochondrial ...	[more]

BLAST of MS022267.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SZL6	5.4e-120	64.17	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4IHL3	6.4e-28	24.74	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
B6TGN4	2.7e-26	22.68	Transcription termination factor MTERF4, chloroplastic OS=Zea mays OX=4577 GN=MT...	[more]
Q6AUK6	2.7e-26	22.68	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]
F4JVI3	7.8e-26	27.56	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of MS022267.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2G0	1.8e-182	99.09	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Momordic...	[more]
A0A5A7UUK2	1.5e-165	88.36	Transcription termination factor MTERF6 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0K108	1.9e-163	89.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G029940 PE=3 SV=1	[more]
A0A1S3BQA2	1.6e-162	88.41	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucumis ...	[more]
A0A6J1I081	1.6e-159	87.20	transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Cucurbit...	[more]

BLAST of MS022267.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G38160.1	3.9e-121	64.17	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.2	3.9e-121	64.17	Mitochondrial transcription termination factor family protein	[more]
AT4G38160.3	3.9e-121	64.17	Mitochondrial transcription termination factor family protein	[more]
AT1G78930.1	3.1e-30	28.73	Mitochondrial transcription termination factor family protein	[more]
AT2G21710.1	4.5e-29	24.74	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 141..172 e-value: 9.5E-6 score: 35.1 coord: 105..136 e-value: 2.7E-4 score: 30.2 coord: 214..245 e-value: 0.11 score: 21.7 coord: 250..282 e-value: 0.18 score: 20.9 coord: 178..209 e-value: 2.0E-5 score: 34.0 coord: 283..314 e-value: 9.8 score: 15.1 coord: 69..100 e-value: 180.0 score: 9.7 coord: 34..64 e-value: 620.0 score: 5.5
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 22..131 e-value: 4.6E-13 score: 48.8 coord: 120..328 e-value: 3.7E-42 score: 144.4
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 18..334
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 96..333 e-value: 6.6E-55 score: 188.1
None	No IPR available	PANTHER	PTHR13068:SF5	TRANSCRIPTION TERMINATION FACTOR MTERF6, CHLOROPLASTIC/MITOCHONDRIAL	coord: 18..334

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS022267	MS022267	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS022267.1-cds	MS022267.1-cds-scaffold47:2133938..2134942	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS022267.1	MS022267.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding