MS021974.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS021974.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	peptidyl-prolyl cis-trans isomerase CYP95 isoform X1
Location	scaffold110: 740124 .. 740237 (-)
Sequence length	114
RNA-Seq Expression	MS021974.1
Synteny	MS021974.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTCGCAATCCCCCAGGAGGACTATCAGAGATAGGTCCAGGTCTCCTTCTGGTAGCCCAGATGGGAAGAAGGGCCTGGTCTCGTATGGCGATGGATCTCCCGATTCAGAGAGG

mRNA sequence

GATTCGCAATCCCCCAGGAGGACTATCAGAGATAGGTCCAGGTCTCCTTCTGGTAGCCCAGATGGGAAGAAGGGCCTGGTCTCGTATGGCGATGGATCTCCCGATTCAGAGAGG

Coding sequence (CDS)

GATTCGCAATCCCCCAGGAGGACTATCAGAGATAGGTCCAGGTCTCCTTCTGGTAGCCCAGATGGGAAGAAGGGCCTGGTCTCGTATGGCGATGGATCTCCCGATTCAGAGAGG

Protein sequence

DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER

Homology

[Close]

BLAST of MS021974.1 vs. NCBI nr
Match: XP_022132234.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Momordica charantia] >XP_022132235.1 peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 747 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 784

[Close]

BLAST of MS021974.1 vs. NCBI nr
Match: XP_022132236.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X2 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 682 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 719

[Close]

BLAST of MS021974.1 vs. NCBI nr
Match: XP_022132237.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X3 [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 748 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 785

[Close]

BLAST of MS021974.1 vs. NCBI nr
Match: XP_038885735.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X4 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRRT RD+SRSPSGSP GKKGLVSYGDGSPDSER
Sbjct: 637 DSQSPRRTSRDKSRSPSGSPQGKKGLVSYGDGSPDSER 674

[Close]

BLAST of MS021974.1 vs. NCBI nr
Match: XP_038885730.1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Benincasa hispida] >XP_038885731.1 peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Benincasa hispida])

HSP 1 Score: 69.3 bits (168), Expect = 8.0e-09
Identity = 35/38 (92.11%), Postives = 36/38 (94.74%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRRT RD+SRSPSGSP GKKGLVSYGDGSPDSER
Sbjct: 758 DSQSPRRTSRDKSRSPSGSPQGKKGLVSYGDGSPDSER 795

[Close]

BLAST of MS021974.1 vs. ExPASy TrEMBL
Match: A0A6J1BRW1 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111005142 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 747 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 784

[Close]

BLAST of MS021974.1 vs. ExPASy TrEMBL
Match: A0A6J1BRP7 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111005142 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 682 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 719

[Close]

BLAST of MS021974.1 vs. ExPASy TrEMBL
Match: A0A6J1BTA6 (peptidyl-prolyl cis-trans isomerase CYP95 isoform X3 OS=Momordica charantia OX=3673 GN=LOC111005142 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 7.8e-10
Identity = 36/38 (94.74%), Postives = 37/38 (97.37%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRR IRDRS+SPSGSPDGKKGLVSYGDGSPDSER
Sbjct: 748 DSQSPRRPIRDRSKSPSGSPDGKKGLVSYGDGSPDSER 785

[Close]

BLAST of MS021974.1 vs. ExPASy TrEMBL
Match: A0A0A0LQ44 (PPIase cyclophilin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G380020 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.9e-08
Identity = 35/38 (92.11%), Postives = 35/38 (92.11%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPDSER 39
           DSQSPRRT RDRSRSPS SP GKKGLVSYGDGSPDSER
Sbjct: 747 DSQSPRRTSRDRSRSPSASPVGKKGLVSYGDGSPDSER 784

[Close]

BLAST of MS021974.1 vs. ExPASy TrEMBL
Match: A0A6J1KB87 (peptidyl-prolyl cis-trans isomerase CYP95-like isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111491765 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.3e-08
Identity = 32/35 (91.43%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1   DSQSPRRTIRDRSRSPSGSPDGKKGLVSYGDGSPD 36
           DSQSPRRT++DRSRSPSGSP+GKKGLVSYGDGSPD
Sbjct: 652 DSQSPRRTLKDRSRSPSGSPEGKKGLVSYGDGSPD 686

The following BLAST results are available for this feature:

BLAST of MS021974.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022132234.1	1.6e-09	94.74	peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Momordica charantia] >XP_0...	[more]
XP_022132236.1	1.6e-09	94.74	peptidyl-prolyl cis-trans isomerase CYP95 isoform X2 [Momordica charantia]	[more]
XP_022132237.1	1.6e-09	94.74	peptidyl-prolyl cis-trans isomerase CYP95 isoform X3 [Momordica charantia]	[more]
XP_038885735.1	8.0e-09	92.11	peptidyl-prolyl cis-trans isomerase CYP95 isoform X4 [Benincasa hispida]	[more]
XP_038885730.1	8.0e-09	92.11	peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 [Benincasa hispida] >XP_038...	[more]

BLAST of MS021974.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MS021974.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BRW1	7.8e-10	94.74	peptidyl-prolyl cis-trans isomerase CYP95 isoform X1 OS=Momordica charantia OX=3...	[more]
A0A6J1BRP7	7.8e-10	94.74	peptidyl-prolyl cis-trans isomerase CYP95 isoform X2 OS=Momordica charantia OX=3...	[more]
A0A6J1BTA6	7.8e-10	94.74	peptidyl-prolyl cis-trans isomerase CYP95 isoform X3 OS=Momordica charantia OX=3...	[more]
A0A0A0LQ44	1.9e-08	92.11	PPIase cyclophilin-type domain-containing protein OS=Cucumis sativus OX=3659 GN=...	[more]
A0A6J1KB87	3.3e-08	91.43	peptidyl-prolyl cis-trans isomerase CYP95-like isoform X3 OS=Cucurbita maxima OX...	[more]

BLAST of MS021974.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..38

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS021974	MS021974	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS021974.1-cds	MS021974.1-cds-scaffold110:740124..740237	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS021974.1	MS021974.1-protein	polypeptide