MS020556.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS020556.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	DnaJ domain
Location	scaffold375: 1154161 .. 1154247 (+)
Sequence length	87
RNA-Seq Expression	MS020556.1
Synteny	MS020556.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGGGAGACTGAATATTATGATATATTGGGTGTCGGCGTTGGTGCCTCCCCTGCAGAAATTAAAAAGGCTTACTACGTTAAG

mRNA sequence

ATGGTGAGGGAGACTGAATATTATGATATATTGGGTGTCGGCGTTGGTGCCTCCCCTGCAGAAATTAAAAAGGCTTACTACGTTAAG

Coding sequence (CDS)

ATGGTGAGGGAGACTGAATATTATGATATATTGGGTGTCGGCGTTGGTGCCTCCCCTGCAGAAATTAAAAAGGCTTACTACGTTAAG

Protein sequence

MVRETEYYDILGVGVGASPAEIKKAYYVK

Homology

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BLAST of MS020556.1 vs. NCBI nr
Match: XP_022146080.1 (chaperone protein dnaJ 10 [Momordica charantia])

HSP 1 Score: 62.4 bits (150), Expect = 7.5e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MVRETEYYDILGVGVGASPAEIKKAYYVK
Sbjct: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 29

[Close]

BLAST of MS020556.1 vs. NCBI nr
Match: XP_022876236.1 (chaperone protein dnaJ 10-like isoform X1 [Olea europaea var. sylvestris] >XP_022876237.1 chaperone protein dnaJ 10-like isoform X1 [Olea europaea var. sylvestris] >XP_022876238.1 chaperone protein dnaJ 10-like isoform X1 [Olea europaea var. sylvestris])

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV++TEYYDILGVGV ASPA+IKKAYY+K
Sbjct: 1  MVKDTEYYDILGVGVDASPADIKKAYYIK 29

[Close]

BLAST of MS020556.1 vs. NCBI nr
Match: XP_022876239.1 (chaperone protein dnaJ 10-like isoform X2 [Olea europaea var. sylvestris])

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV++TEYYDILGVGV ASPA+IKKAYY+K
Sbjct: 1  MVKDTEYYDILGVGVDASPADIKKAYYIK 29

[Close]

BLAST of MS020556.1 vs. NCBI nr
Match: CAA3030261.1 (Hypothetical predicted protein [Olea europaea subsp. europaea])

HSP 1 Score: 55.8 bits (133), Expect = 7.0e-05
Identity = 24/29 (82.76%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV++TEYYDILGVGV ASPA+IKKAYY+K
Sbjct: 1  MVKDTEYYDILGVGVDASPADIKKAYYIK 29

[Close]

BLAST of MS020556.1 vs. NCBI nr
Match: XP_031252210.1 (chaperone protein dnaJ 10-like [Pistacia vera] >XP_031252211.1 chaperone protein dnaJ 10-like [Pistacia vera] >XP_031252212.1 chaperone protein dnaJ 10-like [Pistacia vera] >XP_031252213.1 chaperone protein dnaJ 10-like [Pistacia vera])

HSP 1 Score: 55.1 bits (131), Expect = 1.2e-04
Identity = 25/29 (86.21%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+ETEYYDILGV V ASPAEIKKAYY+K
Sbjct: 1  MVKETEYYDILGVSVDASPAEIKKAYYLK 29

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BLAST of MS020556.1 vs. ExPASy Swiss-Prot
Match: Q8GYX8 (Chaperone protein dnaJ 10 OS=Arabidopsis thaliana OX=3702 GN=ATJ10 PE=2 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 3.3e-05
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+ETEYYD+LGV   A+ +EIKKAYY+K
Sbjct: 1  MVKETEYYDVLGVSPTATESEIKKAYYIK 29

[Close]

BLAST of MS020556.1 vs. ExPASy Swiss-Prot
Match: Q8WW22 (DnaJ homolog subfamily A member 4 OS=Homo sapiens OX=9606 GN=DNAJA4 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 2.8e-04
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAY 27
          MV+ET+YYDILGV   ASP EIKKAY
Sbjct: 1  MVKETQYYDILGVKPSASPEEIKKAY 26

[Close]

BLAST of MS020556.1 vs. ExPASy Swiss-Prot
Match: Q9JMC3 (DnaJ homolog subfamily A member 4 OS=Mus musculus OX=10090 GN=Dnaja4 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 2.8e-04
Identity = 20/26 (76.92%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAY 27
          MV+ET+YYDILGV   ASP EIKKAY
Sbjct: 1  MVKETQYYDILGVKPSASPEEIKKAY 26

[Close]

BLAST of MS020556.1 vs. ExPASy Swiss-Prot
Match: P39101 (Protein CAJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=CAJ1 PE=1 SV=1)

HSP 1 Score: 43.5 bits (101), Expect = 4.7e-04
Identity = 19/26 (73.08%), Postives = 22/26 (84.62%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAY 27
          MV+ETEYYDILG+   A+P EIKKAY
Sbjct: 1  MVKETEYYDILGIKPEATPTEIKKAY 26

[Close]

BLAST of MS020556.1 vs. ExPASy TrEMBL
Match: A0A6J1CWA1 (chaperone protein dnaJ 10 OS=Momordica charantia OX=3673 GN=LOC111015376 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-07
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MVRETEYYDILGVGVGASPAEIKKAYYVK
Sbjct: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 29

[Close]

BLAST of MS020556.1 vs. ExPASy TrEMBL
Match: A0A6P6VSY8 (chaperone protein dnaJ 10-like OS=Coffea arabica OX=13443 GN=LOC113726282 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-05
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+ETEYYDILGV + ASPAEIKKAYY+K
Sbjct: 1  MVKETEYYDILGVSIDASPAEIKKAYYLK 29

[Close]

BLAST of MS020556.1 vs. ExPASy TrEMBL
Match: A0A068VH87 (J domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00008522001 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-05
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+ETEYYDILGV + ASPAEIKKAYY+K
Sbjct: 1  MVKETEYYDILGVSIDASPAEIKKAYYLK 29

[Close]

BLAST of MS020556.1 vs. ExPASy TrEMBL
Match: A0A1S3X8B8 (chaperone protein dnaJ 10-like OS=Nicotiana tabacum OX=4097 GN=LOC107762300 PE=4 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.5e-05
Identity = 23/29 (79.31%), Postives = 28/29 (96.55%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV++TEYYD+LGVGV A+PAEIKKAYY+K
Sbjct: 1  MVKDTEYYDLLGVGVNATPAEIKKAYYLK 29

[Close]

BLAST of MS020556.1 vs. ExPASy TrEMBL
Match: A0A5B7BDS7 (Putative chaperone protein dnaJ 10 OS=Davidia involucrata OX=16924 GN=Din_036166 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-04
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV++TEYYDILGV V ASPAEIKKAYY+K
Sbjct: 1  MVKDTEYYDILGVNVDASPAEIKKAYYLK 29

[Close]

BLAST of MS020556.1 vs. TAIR 10
Match: AT4G39150.1 (DNAJ heat shock N-terminal domain-containing protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-06
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+E+EYYDILGV + AS AEIKKAYYV+
Sbjct: 1  MVKESEYYDILGVKIDASGAEIKKAYYVQ 29

[Close]

BLAST of MS020556.1 vs. TAIR 10
Match: AT4G39150.2 (DNAJ heat shock N-terminal domain-containing protein )

HSP 1 Score: 48.5 bits (114), Expect = 1.0e-06
Identity = 22/29 (75.86%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+E+EYYDILGV + AS AEIKKAYYV+
Sbjct: 1  MVKESEYYDILGVKIDASGAEIKKAYYVQ 29

[Close]

BLAST of MS020556.1 vs. TAIR 10
Match: AT2G21510.1 (DNAJ heat shock N-terminal domain-containing protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-06
Identity = 22/29 (75.86%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+ETEYY+ILGV   AS AEIKKAYY+K
Sbjct: 1  MVKETEYYEILGVKTDASDAEIKKAYYLK 29

[Close]

BLAST of MS020556.1 vs. TAIR 10
Match: AT1G76700.1 (DNAJ heat shock N-terminal domain-containing protein )

HSP 1 Score: 47.4 bits (111), Expect = 2.3e-06
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+ETEYYD+LGV   A+ +EIKKAYY+K
Sbjct: 1  MVKETEYYDVLGVSPTATESEIKKAYYIK 29

[Close]

BLAST of MS020556.1 vs. TAIR 10
Match: AT1G21080.1 (DNAJ heat shock N-terminal domain-containing protein )

HSP 1 Score: 47.0 bits (110), Expect = 3.0e-06
Identity = 20/29 (68.97%), Postives = 25/29 (86.21%), Query Frame = 0


Query: 1  MVRETEYYDILGVGVGASPAEIKKAYYVK 30
          MV+ETE+YD+LGV   A+ AEIKKAYY+K
Sbjct: 1  MVKETEFYDVLGVSPTATEAEIKKAYYIK 29

The following BLAST results are available for this feature:

BLAST of MS020556.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022146080.1	7.5e-07	100.00	chaperone protein dnaJ 10 [Momordica charantia]	[more]
XP_022876236.1	7.0e-05	82.76	chaperone protein dnaJ 10-like isoform X1 [Olea europaea var. sylvestris] >XP_02...	[more]
XP_022876239.1	7.0e-05	82.76	chaperone protein dnaJ 10-like isoform X2 [Olea europaea var. sylvestris]	[more]
CAA3030261.1	7.0e-05	82.76	Hypothetical predicted protein [Olea europaea subsp. europaea]	[more]
XP_031252210.1	1.2e-04	86.21	chaperone protein dnaJ 10-like [Pistacia vera] >XP_031252211.1 chaperone protein...	[more]

BLAST of MS020556.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYX8	3.3e-05	68.97	Chaperone protein dnaJ 10 OS=Arabidopsis thaliana OX=3702 GN=ATJ10 PE=2 SV=2	[more]
Q8WW22	2.8e-04	76.92	DnaJ homolog subfamily A member 4 OS=Homo sapiens OX=9606 GN=DNAJA4 PE=1 SV=1	[more]
Q9JMC3	2.8e-04	76.92	DnaJ homolog subfamily A member 4 OS=Mus musculus OX=10090 GN=Dnaja4 PE=1 SV=1	[more]
P39101	4.7e-04	73.08	Protein CAJ1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]

BLAST of MS020556.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CWA1	3.6e-07	100.00	chaperone protein dnaJ 10 OS=Momordica charantia OX=3673 GN=LOC111015376 PE=4 SV...	[more]
A0A6P6VSY8	7.5e-05	82.76	chaperone protein dnaJ 10-like OS=Coffea arabica OX=13443 GN=LOC113726282 PE=4 S...	[more]
A0A068VH87	7.5e-05	82.76	J domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00008522001 P...	[more]
A0A1S3X8B8	7.5e-05	79.31	chaperone protein dnaJ 10-like OS=Nicotiana tabacum OX=4097 GN=LOC107762300 PE=4...	[more]
A0A5B7BDS7	1.3e-04	82.76	Putative chaperone protein dnaJ 10 OS=Davidia involucrata OX=16924 GN=Din_036166...	[more]

BLAST of MS020556.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G39150.1	1.0e-06	75.86	DNAJ heat shock N-terminal domain-containing protein	[more]
AT4G39150.2	1.0e-06	75.86	DNAJ heat shock N-terminal domain-containing protein	[more]
AT2G21510.1	1.4e-06	75.86	DNAJ heat shock N-terminal domain-containing protein	[more]
AT1G76700.1	2.3e-06	68.97	DNAJ heat shock N-terminal domain-containing protein	[more]
AT1G21080.1	3.0e-06	68.97	DNAJ heat shock N-terminal domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036869	Chaperone J-domain superfamily	GENE3D	1.10.287.110	DnaJ domain	coord: 1..29 e-value: 2.2E-6 score: 29.8
IPR036869	Chaperone J-domain superfamily	SUPERFAMILY	46565	Chaperone J-domain	coord: 2..27
IPR001623	DnaJ domain	CDD	cd06257	DnaJ	coord: 6..27 e-value: 1.61149E-7 score: 39.4509

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS020556	MS020556	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS020556.1-cds	MS020556.1-cds-scaffold375:1154161..1154247	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS020556.1	MS020556.1-protein	polypeptide