MS018886.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS018886.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	scaffold89: 208821 .. 210131 (+)
Sequence length	813
RNA-Seq Expression	MS018886.1
Synteny	MS018886.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCTTCACTCTCAGCGGCCACACCCTTGGCTGTGCAGGTGCGGCCCTGTTCTAGTTCTTGGTCTCACTCCGCCATTTCCAACACCTTCTTTTCTCCATCATTCACCCCAAGAGAAAGACCACACTCCCACTCCCACTCCCGACGGACAATCGTGGCACGAGCCCAAGCTCAGCCGCGCCGGACTTGGCTCCCCGGCCTCGACCCCCCACCGCACCTCGATGGAAGGTCAGCCTTAGCCCCTCAAATTCAACTAATTCTAACTCTTCTTTCTCCCCTCGTAATGCTCTTTCTGCAGTCTGGCCGGCGATTTCGGATTCGACCCACTTGGGCTCGCCGAGGACCCCGAAAGCTTGAAGTGGTACGTCCAAGCGGAGCTCCTCCATTCTCGATTCGCCATGCTCGGAATCTCCGGAATTCTCCTCACAGACGTCTGTATACCCTACACACATTACCCAATTCTTACCCCCACAACACACAATAATAATCCTCCTCTTCTTCTTCTTCTTTGTGCCAGCTGCTTCGTGTTACAGGAGTCAGCAAAGTACCAGTTTGGTACACTGCGGGTGCGGCGGAATACGGGTTCGCCAATAAAGAAACCCTCTTCATCGTTCAGCTGCTGTTGATGGGGTCCCAAATTCTGTCTCTCCCGTCATTTCTTTCTGCTTTGTCTGTTCCTGTTCCTGTTCCTGTATGTGGCAGTGATCGTTTTTTCCTTTTCTTTATAGGTTTGTAGAAACCAAAAGATACATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGGTTGGAAGCCGCTCTCGAAGGTCTCGAGCCCGGGTAATGTACAACATTTCAACTTATCTGGAAACTCGTATGATTTCATTTCAATATCTTAACTCAACTAGTAGTTTATCTAAGCAAATGAAAAGGGAGTATTTGTTATTTTATTTCCCCTTTGATTTGAACCTTATGGATTGAACATCCTTGAGCTTTAATTGACTTACAGATACCCTGGGGGTCCTCTGCTGAATCCACTAGGCCTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGTTCAGTTTTCCACTCACATTGTTGAATTTTCATATTCTTCTTCGTTTTGGACTAATCCTTATTCCTTCGTACAGGACGGTTAGCGATGGTAGCCATGGTTGGGATCTTCGTGCAGGCTTATGTAACTCACGCAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTCTCAAGCTCAAGTCCT

mRNA sequence

ATGGCGGTTTCTTCACTCTCAGCGGCCACACCCTTGGCTGTGCAGGTGCGGCCCTGTTCTAGTTCTTGGTCTCACTCCGCCATTTCCAACACCTTCTTTTCTCCATCATTCACCCCAAGAGAAAGACCACACTCCCACTCCCACTCCCGACGGACAATCGTGGCACGAGCCCAAGCTCAGCCGCGCCGGACTTGGCTCCCCGGCCTCGACCCCCCACCGCACCTCGATGGAAGTCTGGCCGGCGATTTCGGATTCGACCCACTTGGGCTCGCCGAGGACCCCGAAAGCTTGAAGTGGTACGTCCAAGCGGAGCTCCTCCATTCTCGATTCGCCATGCTCGGAATCTCCGGAATTCTCCTCACAGACCTGCTTCGTGTTACAGGAGTCAGCAAAGTACCAGTTTGGTACACTGCGGGTGCGGCGGAATACGGGTTCGCCAATAAAGAAACCCTCTTCATCGTTCAGCTGCTGTTGATGGGGTTTGTAGAAACCAAAAGATACATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGGTTGGAAGCCGCTCTCGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGCTGAATCCACTAGGCCTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGACGGTTAGCGATGGTAGCCATGGTTGGGATCTTCGTGCAGGCTTATGTAACTCACGCAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTCTCAAGCTCAAGTCCT

Coding sequence (CDS)

ATGGCGGTTTCTTCACTCTCAGCGGCCACACCCTTGGCTGTGCAGGTGCGGCCCTGTTCTAGTTCTTGGTCTCACTCCGCCATTTCCAACACCTTCTTTTCTCCATCATTCACCCCAAGAGAAAGACCACACTCCCACTCCCACTCCCGACGGACAATCGTGGCACGAGCCCAAGCTCAGCCGCGCCGGACTTGGCTCCCCGGCCTCGACCCCCCACCGCACCTCGATGGAAGTCTGGCCGGCGATTTCGGATTCGACCCACTTGGGCTCGCCGAGGACCCCGAAAGCTTGAAGTGGTACGTCCAAGCGGAGCTCCTCCATTCTCGATTCGCCATGCTCGGAATCTCCGGAATTCTCCTCACAGACCTGCTTCGTGTTACAGGAGTCAGCAAAGTACCAGTTTGGTACACTGCGGGTGCGGCGGAATACGGGTTCGCCAATAAAGAAACCCTCTTCATCGTTCAGCTGCTGTTGATGGGGTTTGTAGAAACCAAAAGATACATGGATTTCAAAAGCCCTGGATCTCAAGCACAAGAAGGAACTTTCTTTGGGTTGGAAGCCGCTCTCGAAGGTCTCGAGCCCGGATACCCTGGGGGTCCTCTGCTGAATCCACTAGGCCTGGCTAAAGATATCAAGAATGCCCATGACTGGAAGCTCAAGGAGATTAAGAATGGACGGTTAGCGATGGTAGCCATGGTTGGGATCTTCGTGCAGGCTTATGTAACTCACGCAGGGCCAATAGATAACCTTGTGGAGCACCTTTCTAATCCATGGCACAAGACTATTATCCAGACACTCTCAAGCTCAAGTCCT

Protein sequence

MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP

Homology

[Close]

BLAST of MS018886.1 vs. NCBI nr
Match: XP_022144176.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 541.6 bits (1394), Expect = 3.9e-150
Identity = 270/273 (98.90%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQ 60
           MAVSSLSAATPLAVQVRPCSSSWS SAISNTFFSPSFTPRERP  HSHSHSRRTIVARAQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120
           AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240
           EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ
Sbjct: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240

Query: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 272
           AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 273

[Close]

BLAST of MS018886.1 vs. NCBI nr
Match: XP_022144175.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 535.8 bits (1379), Expect = 2.2e-148
Identity = 270/277 (97.47%), Postives = 270/277 (97.47%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQ 60
           MAVSSLSAATPLAVQVRPCSSSWS SAISNTFFSPSFTPRERP  HSHSHSRRTIVARAQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120
           AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG----FVETKRYMDFKSPG 180
           LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG    FVETKRYMDFKSPG
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGSQILFVETKRYMDFKSPG 180

Query: 181 SQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVG 240
           SQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVG
Sbjct: 181 SQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVG 240

Query: 241 IFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 272
           IFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 IFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 277

[Close]

BLAST of MS018886.1 vs. NCBI nr
Match: XP_038886221.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 430.3 bits (1105), Expect = 1.3e-116
Identity = 215/270 (79.63%), Postives = 236/270 (87.41%), Query Frame = 0


Query: 1   MAVS-SLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQ 60
           MAVS S + A   A  ++P SSS S        ++PSF P +     S SRRT ++A+AQ
Sbjct: 1   MAVSVSAATARATAFHLQPSSSSSS--------YTPSFNPNQSLRLRSPSRRTLLIAQAQ 60

Query: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120
           ++ R+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLKWYVQAEL+HSRFAMLG+SGI
Sbjct: 61  SEHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWYVQAELVHSRFAMLGVSGI 120

Query: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTG+S++PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240
           EGTFFGLEAA EGLEPGYPGGPLLNPLG+AKDIKNAH+WKLKEIKNGRLAMVAM+GIFVQ
Sbjct: 181 EGTFFGLEAAFEGLEPGYPGGPLLNPLGIAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQ 240

Query: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSS 269
           AYVTH GPIDNLVEHLSNPWHKTIIQTLSS
Sbjct: 241 AYVTHTGPIDNLVEHLSNPWHKTIIQTLSS 262

[Close]

BLAST of MS018886.1 vs. NCBI nr
Match: XP_004150882.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus] >KGN62506.1 hypothetical protein Csa_022315 [Cucumis sativus])

HSP 1 Score: 427.9 bits (1099), Expect = 6.3e-116
Identity = 215/272 (79.04%), Postives = 236/272 (86.76%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQA 60
           MAV S SAAT  A+ + P SSS          ++P F P +     S SRRT ++A AQ+
Sbjct: 1   MAV-SFSAAT--ALHLHPSSSS----------YTPLFNPSQFLRLRSPSRRTLLIAHAQS 60

Query: 61  QPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGIL 120
           + R+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP+SLKWYVQAEL+H RFAMLG+SG+L
Sbjct: 61  EHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVL 120

Query: 121 LTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQE 180
           LTDLLRVTG+S++PVWY AGA EYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQE
Sbjct: 121 LTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQE 180

Query: 181 GTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQA 240
           GTFFGLEAA +GLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQA
Sbjct: 181 GTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQA 240

Query: 241 YVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 272
           YVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 YVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of MS018886.1 vs. NCBI nr
Match: XP_023001834.1 (photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima])

HSP 1 Score: 422.2 bits (1084), Expect = 3.5e-114
Identity = 214/273 (78.39%), Postives = 234/273 (85.71%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--Q 60
           MAV SLSAATP             H   S++ +S S + ++     S SRRT+ A+A  Q
Sbjct: 1   MAV-SLSAATPF------------HLLPSSSLYSSSLSSKQH-LLRSPSRRTVTAQAQSQ 60

Query: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120
           +QPR+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLKW+VQAEL+HSRFAMLG+SGI
Sbjct: 61  SQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGI 120

Query: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTG+S++PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240
           EGTFFGLE+A EGLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAM+GIFVQ
Sbjct: 181 EGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQ 240

Query: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 272
           AYVT  GPIDNLVEHLSNPWH TII TLSSSSP
Sbjct: 241 AYVTQTGPIDNLVEHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of MS018886.1 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.1e-99
Identity = 170/213 (79.81%), Postives = 192/213 (90.14%), Query Frame = 0


Query: 59  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 118
           A  R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDPESLKWYVQAEL+HSRFAMLG++GI
Sbjct: 43  AVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102

Query: 119 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 178
           L TDLLR TG+  +PVWY AGA ++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+
Sbjct: 103 LFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAK 162

Query: 179 EGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFV 238
           EG+ FFGLEAALEGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AM+G FV
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222

Query: 239 QAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSS 271
           QA VTH GPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of MS018886.1 vs. ExPASy Swiss-Prot
Match: Q9SQL2 (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 4.2e-54
Identity = 105/205 (51.22%), Postives = 142/205 (69.27%), Query Frame = 0


Query: 65  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLL 124
           WLPGL  P +L GSL GD GFDPLGLAEDPE+L+W+VQAEL++ R+AMLG++G+LL ++ 
Sbjct: 56  WLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVF 115

Query: 125 RVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 184
              G+  VP WY AG  EY FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 116 TSIGIINVPKWYAAGKEEY-FASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF-- 175

Query: 185 LEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHA 244
            + +L   E GYPGG + NPL  A  +    + K KEI NGRLAM+A +G  +Q  VT  
Sbjct: 176 KQYSLPAGEVGYPGG-IFNPLNFAPTL----EAKEKEIANGRLAMLAFLGFIIQHNVTGK 235

Query: 245 GPIDNLVEHLSNPWHKTIIQTLSSS 270
           GP DNL++H+S+PWH TI+QTL  +
Sbjct: 236 GPFDNLLQHISDPWHNTIVQTLGGN 252

[Close]

BLAST of MS018886.1 vs. ExPASy Swiss-Prot
Match: P27521 (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA4 PE=1 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.6e-53
Identity = 105/203 (51.72%), Postives = 141/203 (69.46%), Query Frame = 0


Query: 65  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLL 124
           WLPGL  P +L GSLAGD GFDPLGLAEDPE+LKW+VQAEL++ R+AMLG++G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 125 RVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 184
              G+  VP WY AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 176

Query: 185 LEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHA 244
            + +L   E GYPGG + NPL  A       + K KE+ NGRLAM+A +G  VQ  VT  
Sbjct: 177 KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGK 236

Query: 245 GPIDNLVEHLSNPWHKTIIQTLS 268
           GP +NL++HLS+PWH TI+QT +
Sbjct: 237 GPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of MS018886.1 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 3.7e-50
Identity = 107/221 (48.42%), Postives = 133/221 (60.18%), Query Frame = 0


Query: 49  SRRTIVARAQAQP-RRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLH 108
           SR   V+   A P R  W PG  PP  LDGSL GDFGFDPLGL  DPESLKW  QAEL+H
Sbjct: 51  SRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVH 110

Query: 109 SRFAMLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRY 168
           SR+AMLG +GI + + L   GV   P WYTAG  EY F +  TLF+++L+L+G+ E +R+
Sbjct: 111 SRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEY-FTDTTTLFVIELVLIGWAEGRRW 170

Query: 169 MDFKSPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGR 228
            D   PG    +  F      L G + GYPGG   +PLG          + + KEIKNGR
Sbjct: 171 ADIIKPGCVNTDPIF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKIKELRTKEIKNGR 230

Query: 229 LAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLS 268
           LAM+A++G + Q   T  GPIDNL  HL++P H TI    S
Sbjct: 231 LAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATIFAAFS 268

[Close]

BLAST of MS018886.1 vs. ExPASy Swiss-Prot
Match: Q9SYW8 (Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA2 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 6.3e-50
Identity = 103/212 (48.58%), Postives = 133/212 (62.74%), Query Frame = 0


Query: 52  TIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFA 111
           ++ A A    R  W PG  PP  LDGSL GDFGFDPLGL+ DP+SLKW VQAE++H R+A
Sbjct: 42  SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWA 101

Query: 112 MLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFK 171
           MLG +GI + + L   G+   P WYTAG  EY F +K TLF+V+L+L+G+ E +R+ D  
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 161

Query: 172 SPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMV 231
            PGS   +  F      L G + GYPGG   +PLG          + + KEIKNGRLAM+
Sbjct: 162 KPGSVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 221

Query: 232 AMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTI 263
           A++G + Q   T  GPIDNL  HL++P H TI
Sbjct: 222 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 250

[Close]

BLAST of MS018886.1 vs. ExPASy TrEMBL
Match: A0A6J1CSJ3 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013928 PE=3 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 1.9e-150
Identity = 270/273 (98.90%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQ 60
           MAVSSLSAATPLAVQVRPCSSSWS SAISNTFFSPSFTPRERP  HSHSHSRRTIVARAQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120
           AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240
           EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ
Sbjct: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240

Query: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 272
           AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 273

[Close]

BLAST of MS018886.1 vs. ExPASy TrEMBL
Match: A0A6J1CQX2 (Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013928 PE=3 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.0e-148
Identity = 270/277 (97.47%), Postives = 270/277 (97.47%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERP--HSHSHSRRTIVARAQ 60
           MAVSSLSAATPLAVQVRPCSSSWS SAISNTFFSPSFTPRERP  HSHSHSRRTIVARAQ
Sbjct: 1   MAVSSLSAATPLAVQVRPCSSSWSPSAISNTFFSPSFTPRERPHSHSHSHSRRTIVARAQ 60

Query: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120
           AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI
Sbjct: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120

Query: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG----FVETKRYMDFKSPG 180
           LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMG    FVETKRYMDFKSPG
Sbjct: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGSQILFVETKRYMDFKSPG 180

Query: 181 SQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVG 240
           SQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVG
Sbjct: 181 SQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVG 240

Query: 241 IFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 272
           IFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 IFVQAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 277

[Close]

BLAST of MS018886.1 vs. ExPASy TrEMBL
Match: A0A0A0LRB4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_2G357290 PE=3 SV=1)

HSP 1 Score: 427.9 bits (1099), Expect = 3.1e-116
Identity = 215/272 (79.04%), Postives = 236/272 (86.76%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRT-IVARAQA 60
           MAV S SAAT  A+ + P SSS          ++P F P +     S SRRT ++A AQ+
Sbjct: 1   MAV-SFSAAT--ALHLHPSSSS----------YTPLFNPSQFLRLRSPSRRTLLIAHAQS 60

Query: 61  QPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGIL 120
           + R+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP+SLKWYVQAEL+H RFAMLG+SG+L
Sbjct: 61  EHRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPQSLKWYVQAELVHCRFAMLGVSGVL 120

Query: 121 LTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQE 180
           LTDLLRVTG+S++PVWY AGA EYGFANK TLFIVQLLLMGFVETKRYMDFKSPGSQAQE
Sbjct: 121 LTDLLRVTGISELPVWYNAGAVEYGFANKRTLFIVQLLLMGFVETKRYMDFKSPGSQAQE 180

Query: 181 GTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQA 240
           GTFFGLEAA +GLEPGYPGGPLLNPLG+AKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQA
Sbjct: 181 GTFFGLEAAFKGLEPGYPGGPLLNPLGIAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQA 240

Query: 241 YVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 272
           YVTH GPIDNLVEHLSNPWHKTIIQTLSSSSP
Sbjct: 241 YVTHTGPIDNLVEHLSNPWHKTIIQTLSSSSP 259

[Close]

BLAST of MS018886.1 vs. ExPASy TrEMBL
Match: A0A6J1KNS0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111495909 PE=3 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 1.7e-114
Identity = 214/273 (78.39%), Postives = 234/273 (85.71%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--Q 60
           MAV SLSAATP             H   S++ +S S + ++     S SRRT+ A+A  Q
Sbjct: 1   MAV-SLSAATPF------------HLLPSSSLYSSSLSSKQH-LLRSPSRRTVTAQAQSQ 60

Query: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120
           +QPR+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLKW+VQAEL+HSRFAMLG+SGI
Sbjct: 61  SQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGI 120

Query: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTG+S++PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240
           EGTFFGLE+A EGLEPGYPGGPLLNPLGLAKDIKNAH+WKLKEIKNGRLAMVAM+GIFVQ
Sbjct: 181 EGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHEWKLKEIKNGRLAMVAMLGIFVQ 240

Query: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSSP 272
           AYVT  GPIDNLVEHLSNPWH TII TLSSSSP
Sbjct: 241 AYVTQTGPIDNLVEHLSNPWHNTIIHTLSSSSP 259

[Close]

BLAST of MS018886.1 vs. ExPASy TrEMBL
Match: A0A6J1GH16 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111454144 PE=3 SV=1)

HSP 1 Score: 419.9 bits (1078), Expect = 8.3e-114
Identity = 212/270 (78.52%), Postives = 232/270 (85.93%), Query Frame = 0


Query: 1   MAVSSLSAATPLAVQVRPCSSSWSHSAISNTFFSPSFTPRERPHSHSHSRRTIVARA--Q 60
           MAV SLSAAT              H   S++F+S S +P++     S SRRT+ A+A  Q
Sbjct: 1   MAV-SLSAATSF------------HLLPSSSFYSSSLSPKQH-LLRSPSRRTVTAQAQSQ 60

Query: 61  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 120
           +QPR+TWLPGLDPPPHLDG+LAGDFGFDPLGL EDP SLKW+VQAEL+HSRFAMLG+SGI
Sbjct: 61  SQPRQTWLPGLDPPPHLDGTLAGDFGFDPLGLGEDPHSLKWFVQAELVHSRFAMLGVSGI 120

Query: 121 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180
           LLTDLLRVTG+S++PVWY AGA EYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ
Sbjct: 121 LLTDLLRVTGISELPVWYNAGAVEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 180

Query: 181 EGTFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQ 240
           EGTFFGLE+A EGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAM+GIFVQ
Sbjct: 181 EGTFFGLESAFEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQ 240

Query: 241 AYVTHAGPIDNLVEHLSNPWHKTIIQTLSS 269
           AYVT  GPIDNLVEHLSNPWH T+I TLSS
Sbjct: 241 AYVTQTGPIDNLVEHLSNPWHNTVIHTLSS 256

[Close]

BLAST of MS018886.1 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 364.4 bits (934), Expect = 8.0e-101
Identity = 170/213 (79.81%), Postives = 192/213 (90.14%), Query Frame = 0


Query: 59  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 118
           A  R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDPESLKWYVQAEL+HSRFAMLG++GI
Sbjct: 43  AVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102

Query: 119 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 178
           L TDLLR TG+  +PVWY AGA ++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+
Sbjct: 103 LFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAK 162

Query: 179 EGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFV 238
           EG+ FFGLEAALEGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AM+G FV
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222

Query: 239 QAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSS 271
           QA VTH GPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of MS018886.1 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 364.4 bits (934), Expect = 8.0e-101
Identity = 170/213 (79.81%), Postives = 192/213 (90.14%), Query Frame = 0


Query: 59  AQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGI 118
           A  R TWLPGL+PPP+LDG+LAGD+GFDPLGL EDPESLKWYVQAEL+HSRFAMLG++GI
Sbjct: 43  AVERATWLPGLNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVAGI 102

Query: 119 LLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQ 178
           L TDLLR TG+  +PVWY AGA ++ FA+ +TL +VQ LLMGF ETKRYMDF SPGSQA+
Sbjct: 103 LFTDLLRTTGIRNLPVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAK 162

Query: 179 EGT-FFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFV 238
           EG+ FFGLEAALEGLEPGYPGGPLLNPLGLAKD++NAHDWKLKEIKNGRLAM+AM+G FV
Sbjct: 163 EGSFFFGLEAALEGLEPGYPGGPLLNPLGLAKDVQNAHDWKLKEIKNGRLAMMAMLGFFV 222

Query: 239 QAYVTHAGPIDNLVEHLSNPWHKTIIQTLSSSS 271
           QA VTH GPIDNLVEHLSNPWHKTIIQTL +S+
Sbjct: 223 QASVTHTGPIDNLVEHLSNPWHKTIIQTLFTST 255

[Close]

BLAST of MS018886.1 vs. TAIR 10
Match: AT3G47470.1 (light-harvesting chlorophyll-protein complex I subunit A4 )

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-54
Identity = 105/203 (51.72%), Postives = 141/203 (69.46%), Query Frame = 0


Query: 65  WLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFAMLGISGILLTDLL 124
           WLPGL  P +L GSLAGD GFDPLGLAEDPE+LKW+VQAEL++ R+AMLG++G+LL ++ 
Sbjct: 57  WLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVF 116

Query: 125 RVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFG 184
              G+  VP WY AG  +Y FA+  TLF+++ +L  +VE +R+ D K+PGS  Q+  F  
Sbjct: 117 TKIGIINVPEWYDAGKEQY-FASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-- 176

Query: 185 LEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHA 244
            + +L   E GYPGG + NPL  A       + K KE+ NGRLAM+A +G  VQ  VT  
Sbjct: 177 KQYSLPKGEVGYPGG-IFNPLNFAP----TQEAKEKELANGRLAMLAFLGFVVQHNVTGK 236

Query: 245 GPIDNLVEHLSNPWHKTIIQTLS 268
           GP +NL++HLS+PWH TI+QT +
Sbjct: 237 GPFENLLQHLSDPWHNTIVQTFN 251

[Close]

BLAST of MS018886.1 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 199.1 bits (505), Expect = 4.5e-51
Identity = 103/212 (48.58%), Postives = 133/212 (62.74%), Query Frame = 0


Query: 52  TIVARAQAQPRRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESLKWYVQAELLHSRFA 111
           ++ A A    R  W PG  PP  LDGSL GDFGFDPLGL+ DP+SLKW VQAE++H R+A
Sbjct: 42  SVRAVAADPDRPIWFPGSTPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWA 101

Query: 112 MLGISGILLTDLLRVTGVSKVPVWYTAGAAEYGFANKETLFIVQLLLMGFVETKRYMDFK 171
           MLG +GI + + L   G+   P WYTAG  EY F +K TLF+V+L+L+G+ E +R+ D  
Sbjct: 102 MLGAAGIFIPEFLTKIGILNTPSWYTAGEQEY-FTDKTTLFVVELILIGWAEGRRWADII 161

Query: 172 SPGSQAQEGTFFGLEAALEGLEPGYPGGPLLNPLGLAK-DIKNAHDWKLKEIKNGRLAMV 231
            PGS   +  F      L G + GYPGG   +PLG          + + KEIKNGRLAM+
Sbjct: 162 KPGSVNTDPVF--PNNKLTGTDVGYPGGLWFDPLGWGSGSPAKLKELRTKEIKNGRLAML 221

Query: 232 AMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTI 263
           A++G + Q   T  GPIDNL  HL++P H TI
Sbjct: 222 AVMGAWFQHIYTGTGPIDNLFAHLADPGHATI 250

[Close]

BLAST of MS018886.1 vs. TAIR 10
Match: AT1G61520.1 (photosystem I light harvesting complex gene 3 )

HSP 1 Score: 175.6 bits (444), Expect = 5.3e-44
Identity = 98/244 (40.16%), Postives = 140/244 (57.38%), Query Frame = 0


Query: 45  SHSHSRRTIVARAQAQP-------RRTWLPGLDPPPHLDGSLAGDFGFDPLGLAEDPESL 104
           S S  + + V +A A P       R  W        +LDGSL GD+GFDPLGL+ DPE  
Sbjct: 29  SASQKKSSFVVKAAATPPVKQGANRPLWFASSQSLSYLDGSLPGDYGFDPLGLS-DPEGT 88

Query: 105 ------KWYVQAELLHSRFAMLGISGILLTDLLRVTGVSKVPV---WYTAG----AAEYG 164
                 +W    E+++ RFAMLG +G +  ++L   G+        W+  G    A  Y 
Sbjct: 89  GGFIEPRWLAYGEIINGRFAMLGAAGAIAPEILGKAGLIPAETALPWFQTGVIPPAGTYT 148

Query: 165 F-ANKETLFIVQLLLMGFVETKRYMDFKSPGSQAQEGTFFGLEAALEGL-EPGYPGGPLL 224
           + A+  TLF++++ LMGF E +R  D+ +PGS  ++  F GLE  L G   P YPGGP  
Sbjct: 149 YWADNYTLFVLEMALMGFAEHRRLQDWYNPGSMGKQ-YFLGLEKGLAGSGNPAYPGGPFF 208

Query: 225 NPLGLAKDIKNAHDWKLKEIKNGRLAMVAMVGIFVQAYVTHAGPIDNLVEHLSNPWHKTI 267
           NPLG  KD K+  + KLKE+KNGRLAM+A++G F+Q  VT  GP  NL++HL++P +  +
Sbjct: 209 NPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHLADPVNNNV 268

The following BLAST results are available for this feature:

BLAST of MS018886.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144176.1	3.9e-150	98.90	photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X2 [Momor...	[more]
XP_022144175.1	2.2e-148	97.47	photosystem I chlorophyll a/b-binding protein 5, chloroplastic isoform X1 [Momor...	[more]
XP_038886221.1	1.3e-116	79.63	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Benincasa hispid...	[more]
XP_004150882.1	6.3e-116	79.04	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucumis sativus]...	[more]
XP_023001834.1	3.5e-114	78.39	photosystem I chlorophyll a/b-binding protein 5, chloroplastic [Cucurbita maxima...	[more]

BLAST of MS018886.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C639	1.1e-99	79.81	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
Q9SQL2	4.2e-54	51.22	Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum OX=3888 GN=lh...	[more]
P27521	1.6e-53	51.72	Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
P13869	3.7e-50	48.42	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]
Q9SYW8	6.3e-50	48.58	Photosystem I chlorophyll a/b-binding protein 2, chloroplastic OS=Arabidopsis th...	[more]

BLAST of MS018886.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSJ3	1.9e-150	98.90	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A6J1CQX2	1.0e-148	97.47	Chlorophyll a-b binding protein, chloroplastic OS=Momordica charantia OX=3673 GN...	[more]
A0A0A0LRB4	3.1e-116	79.04	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A6J1KNS0	1.7e-114	78.39	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1GH16	8.3e-114	78.52	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]

BLAST of MS018886.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G45474.1	8.0e-101	79.81	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	8.0e-101	79.81	photosystem I light harvesting complex gene 5	[more]
AT3G47470.1	1.1e-54	51.72	light-harvesting chlorophyll-protein complex I subunit A4	[more]
AT3G61470.1	4.5e-51	48.58	photosystem I light harvesting complex gene 2	[more]
AT1G61520.1	5.3e-44	40.16	photosystem I light harvesting complex gene 3	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 63..270 e-value: 1.0E-60 score: 207.1
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 71..240 e-value: 1.8E-47 score: 161.8
None	No IPR available	PANTHER	PTHR21649:SF67	PHOTOSYSTEM I CHLOROPHYLL A/B-BINDING PROTEIN 5, CHLOROPLASTIC	coord: 42..268
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 58..268
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 42..268

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS018886	MS018886	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS018886.1-cds	MS018886.1-cds-scaffold89:208821..209053	CDS
MS018886.1-cds	MS018886.1-cds-scaffold89:209124..209256	CDS
MS018886.1-cds	MS018886.1-cds-scaffold89:209343..209455	CDS
MS018886.1-cds	MS018886.1-cds-scaffold89:209554..209658	CDS
MS018886.1-cds	MS018886.1-cds-scaffold89:209828..209916	CDS
MS018886.1-cds	MS018886.1-cds-scaffold89:209992..210131	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS018886.1	MS018886.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane