MS018372.1 (mRNA) Bitter gourd (TR) v1

Overview


Name	MS018372.1
Type	mRNA
Organism	Momordica charantia cv. TR (Bitter gourd (TR) v1)
Description	F-box/kelch-repeat protein SKIP30-like
Location	scaffold342: 363511 .. 364548 (+)
Sequence length	1038
RNA-Seq Expression	MS018372.1
Synteny	MS018372.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTGGTCTGATTGAAGGCCTCCCTGATGCAATTGCCCTTAGATGCCTTGCTCGTGTCCCATATTACCTCCACCCCAAATTGGAACTCGTTTCTCGCTCTTGGAAAGCCGCGTTTCGTAGTGCTGAACTGTTTAGAGCTCGACAAGAGGTTGGTTCATCTGAGGATTTACTGTGTGTATGCTCTTATGACCCAAATAATACATGGCAGCTTTATGATCCTCTCCGAGATCTTTGGATCACCCTCCCTGAACTCCCCTCAAAACGAAGACATCTTTCGCATTTTGGGGCTGCCTCCACTTCTCAATACCTGTTTGTTCTCGGTGGTCGTAGCGATGCTATTGATCCATTGACCGGTGACCATGACGACAACTTATCGACCAATGAGGTATGGTCCTTTGACCCTGTAACACGAAACTGGTTGATGCGAGCACCAATGCTCGTACCACGTGCTATGTTTGCCTGCTGTGTTTTGGAAGGGAAGATCATTGTTGCAGGCGGCTTCACCAGCACATCAAAATCAACTTCCAAGACTGAAATATATGACTCTGAGAAGGATCTTTGGGTTCCGTTACCTGATCTACTTCAAACCCATGATTCAACCTGCATTGGAGTAGTGATAGGAGGAAAAGTGCACATTATGTACAAGGGGCAATCCACAGTACAAATTTTTGACACTTTGGAGCTGAAATGGAGAGTTGAGGATTACGGTTGGCTTCCCGGCCCCATGGCTGCCGTTCAAGATTCACTCTATGTCATGTGCCTAGGATTGATCTTCAAGCAGGATGGACGAGACAGACAGGTTGTCATTCCGGCGGTATCTCAGTTTCTCCATAGAATCGGGATGGCGATGATTGGGTTTAGAGGCGAATTGTATGTGATTGGAGGAGTAGTTCGCCCCGTCCGCCTCGATGCGGATCTCGTAAAACTGTCTGACGTGCATGTTCTTAACCTGAGGGGTGAGAAACCAACTTGGTATTGTGTTGCTCCGATGAGTCGATGCCATGGAACAGTTCTTGGGTGCACAGAGTTGAGAATT

mRNA sequence

ATGTCTGGTCTGATTGAAGGCCTCCCTGATGCAATTGCCCTTAGATGCCTTGCTCGTGTCCCATATTACCTCCACCCCAAATTGGAACTCGTTTCTCGCTCTTGGAAAGCCGCGTTTCGTAGTGCTGAACTGTTTAGAGCTCGACAAGAGGTTGGTTCATCTGAGGATTTACTGTGTGTATGCTCTTATGACCCAAATAATACATGGCAGCTTTATGATCCTCTCCGAGATCTTTGGATCACCCTCCCTGAACTCCCCTCAAAACGAAGACATCTTTCGCATTTTGGGGCTGCCTCCACTTCTCAATACCTGTTTGTTCTCGGTGGTCGTAGCGATGCTATTGATCCATTGACCGGTGACCATGACGACAACTTATCGACCAATGAGGTATGGTCCTTTGACCCTGTAACACGAAACTGGTTGATGCGAGCACCAATGCTCGTACCACGTGCTATGTTTGCCTGCTGTGTTTTGGAAGGGAAGATCATTGTTGCAGGCGGCTTCACCAGCACATCAAAATCAACTTCCAAGACTGAAATATATGACTCTGAGAAGGATCTTTGGGTTCCGTTACCTGATCTACTTCAAACCCATGATTCAACCTGCATTGGAGTAGTGATAGGAGGAAAAGTGCACATTATGTACAAGGGGCAATCCACAGTACAAATTTTTGACACTTTGGAGCTGAAATGGAGAGTTGAGGATTACGGTTGGCTTCCCGGCCCCATGGCTGCCGTTCAAGATTCACTCTATGTCATGTGCCTAGGATTGATCTTCAAGCAGGATGGACGAGACAGACAGGTTGTCATTCCGGCGGTATCTCAGTTTCTCCATAGAATCGGGATGGCGATGATTGGGTTTAGAGGCGAATTGTATGTGATTGGAGGAGTAGTTCGCCCCGTCCGCCTCGATGCGGATCTCGTAAAACTGTCTGACGTGCATGTTCTTAACCTGAGGGGTGAGAAACCAACTTGGTATTGTGTTGCTCCGATGAGTCGATGCCATGGAACAGTTCTTGGGTGCACAGAGTTGAGAATT

Coding sequence (CDS)

ATGTCTGGTCTGATTGAAGGCCTCCCTGATGCAATTGCCCTTAGATGCCTTGCTCGTGTCCCATATTACCTCCACCCCAAATTGGAACTCGTTTCTCGCTCTTGGAAAGCCGCGTTTCGTAGTGCTGAACTGTTTAGAGCTCGACAAGAGGTTGGTTCATCTGAGGATTTACTGTGTGTATGCTCTTATGACCCAAATAATACATGGCAGCTTTATGATCCTCTCCGAGATCTTTGGATCACCCTCCCTGAACTCCCCTCAAAACGAAGACATCTTTCGCATTTTGGGGCTGCCTCCACTTCTCAATACCTGTTTGTTCTCGGTGGTCGTAGCGATGCTATTGATCCATTGACCGGTGACCATGACGACAACTTATCGACCAATGAGGTATGGTCCTTTGACCCTGTAACACGAAACTGGTTGATGCGAGCACCAATGCTCGTACCACGTGCTATGTTTGCCTGCTGTGTTTTGGAAGGGAAGATCATTGTTGCAGGCGGCTTCACCAGCACATCAAAATCAACTTCCAAGACTGAAATATATGACTCTGAGAAGGATCTTTGGGTTCCGTTACCTGATCTACTTCAAACCCATGATTCAACCTGCATTGGAGTAGTGATAGGAGGAAAAGTGCACATTATGTACAAGGGGCAATCCACAGTACAAATTTTTGACACTTTGGAGCTGAAATGGAGAGTTGAGGATTACGGTTGGCTTCCCGGCCCCATGGCTGCCGTTCAAGATTCACTCTATGTCATGTGCCTAGGATTGATCTTCAAGCAGGATGGACGAGACAGACAGGTTGTCATTCCGGCGGTATCTCAGTTTCTCCATAGAATCGGGATGGCGATGATTGGGTTTAGAGGCGAATTGTATGTGATTGGAGGAGTAGTTCGCCCCGTCCGCCTCGATGCGGATCTCGTAAAACTGTCTGACGTGCATGTTCTTAACCTGAGGGGTGAGAAACCAACTTGGTATTGTGTTGCTCCGATGAGTCGATGCCATGGAACAGTTCTTGGGTGCACAGAGTTGAGAATT

Protein sequence

MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCVCSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGDHDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEIYDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLPGPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRPVRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI

Homology

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BLAST of MS018372.1 vs. NCBI nr
Match: XP_022150165.1 (F-box/kelch-repeat protein SKIP30-like [Momordica charantia])

HSP 1 Score: 726.9 bits (1875), Expect = 8.4e-206
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV
Sbjct: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD
Sbjct: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
           HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI
Sbjct: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP
Sbjct: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP
Sbjct: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
           VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI
Sbjct: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 346

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BLAST of MS018372.1 vs. NCBI nr
Match: KAG6575922.1 (F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 588.2 bits (1515), Expect = 4.7e-164
Identity = 274/346 (79.19%), Postives = 305/346 (88.15%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAI++RCLA VPYYLHPKLELVSRSWKAA RS ELFRARQEVGSSEDLLCV
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSYDPNNTWQLYDPL++LW+TLPELPSK RHL++FGA STSQ LFVLGGR DA+DP+TGD
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTLPELPSKIRHLANFGAVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
            DDN STNEVWSFDPVTR W MRAPMLVPR+ FACCV++GKI+VAGGFTS SKSTS+ E+
Sbjct: 121 RDDNSSTNEVWSFDPVTRTWSMRAPMLVPRSTFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YDSEKD+W+PLPDLL THDSTCIG++IGG++HIMY G STVQ+FD+LELKWRVEDYGWLP
Sbjct: 181 YDSEKDVWIPLPDLLHTHDSTCIGLMIGGRMHIMYGGVSTVQVFDSLELKWRVEDYGWLP 240

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           G  A V  SLY M  GL+FKQ+ RD Q V+ A SQF+ RIGMAM+GFRGELYVIGGVVRP
Sbjct: 241 GHKAVVGGSLYTMSQGLVFKQEERDAQAVVSA-SQFVQRIGMAMVGFRGELYVIGGVVRP 300

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            R + DLVKLSDVHVL +R EKP+W C APMSRC GTVLGCT  RI
Sbjct: 301 ERFNGDLVKLSDVHVLQVRNEKPSWSCAAPMSRCSGTVLGCTVWRI 345

[Close]

BLAST of MS018372.1 vs. NCBI nr
Match: KAG7014455.1 (F-box/kelch-repeat protein SKIP30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 585.5 bits (1508), Expect = 3.0e-163
Identity = 272/342 (79.53%), Postives = 303/342 (88.60%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAI++RCLA VPYYLHPKLELVSRSWKAA RS ELFRARQEVGSSEDLLCV
Sbjct: 63  MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 122

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSYDPNNTWQLYDPL++LW+TLPELPSK RHL++FGA STSQ LFVLGGR DA+DP+TGD
Sbjct: 123 CSYDPNNTWQLYDPLQNLWMTLPELPSKIRHLANFGAVSTSQKLFVLGGRGDAVDPVTGD 182

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
            DDN STNEVWSFDPVTR W MRAPMLVPR+ FACCV++GKI+VAGGFTS SKSTS+ E+
Sbjct: 183 RDDNSSTNEVWSFDPVTRTWSMRAPMLVPRSTFACCVVDGKIVVAGGFTSLSKSTSQAEM 242

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YDSEKD+W+PLPDLL THDSTCIG++IGG++HIMY G STVQ+FD+LELKWRVEDYGWLP
Sbjct: 243 YDSEKDVWIPLPDLLHTHDSTCIGLMIGGRMHIMYGGVSTVQVFDSLELKWRVEDYGWLP 302

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           G  A V  SLY M  GL+FKQ+ RD Q V+ A SQF+ RIGMAM+GFRGELYVIGGVVRP
Sbjct: 303 GHKAVVGGSLYTMSQGLVFKQEERDAQAVVSA-SQFVQRIGMAMVGFRGELYVIGGVVRP 362

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCT 343
            R + DLVKLSDVHVL +R EKP+W C APMSRC GTVLGCT
Sbjct: 363 ERFNGDLVKLSDVHVLQVRNEKPSWSCAAPMSRCSGTVLGCT 403

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BLAST of MS018372.1 vs. NCBI nr
Match: XP_022953500.1 (F-box/kelch-repeat protein SKIP30-like [Cucurbita moschata] >XP_022953501.1 F-box/kelch-repeat protein SKIP30-like [Cucurbita moschata])

HSP 1 Score: 585.1 bits (1507), Expect = 4.0e-163
Identity = 271/346 (78.32%), Postives = 303/346 (87.57%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAI++RCLA VPYYLHPKLELVSRSWKAA RS ELFRARQEVGSSEDLLCV
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSYDPNNTWQLYDPL++LW+TLPELPSK  HL++FG  STSQ LFVLGGR DA+DP+TGD
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTLPELPSKITHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
            +DN STNEVWSFDPVTR W MRAPMLVPR  FACCV++GKI+VAGGFTS SKSTS+ E+
Sbjct: 121 REDNSSTNEVWSFDPVTRTWSMRAPMLVPRYTFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YD+EKD+W+PLPDLL THDSTCIG++IGGK+H+MY G STVQ+FD+LELKWRVEDYGWLP
Sbjct: 181 YDNEKDVWIPLPDLLHTHDSTCIGLMIGGKMHVMYGGVSTVQVFDSLELKWRVEDYGWLP 240

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           G  A V  SLY M  GL+FKQ+ RD Q V+ A SQF+ RIGMA++GFRGELYVIGGVVRP
Sbjct: 241 GHKAVVGGSLYTMSQGLVFKQEERDAQAVVSA-SQFVQRIGMAIVGFRGELYVIGGVVRP 300

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            R D DLVKLSDVHVL +R EKP+WYC APMSRC GTVLGCT  RI
Sbjct: 301 ERFDGDLVKLSDVHVLKVRNEKPSWYCAAPMSRCSGTVLGCTVWRI 345

[Close]

BLAST of MS018372.1 vs. NCBI nr
Match: XP_023547905.1 (F-box/kelch-repeat protein SKIP30-like [Cucurbita pepo subsp. pepo] >XP_023547906.1 F-box/kelch-repeat protein SKIP30-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 581.3 bits (1497), Expect = 5.7e-162
Identity = 271/346 (78.32%), Postives = 305/346 (88.15%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAI++RCLA VPYYLHPKLELVSRSWKAA RS ELFRARQEVGSSEDLLCV
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSYDPNNTWQLYDPL++LW+T+PELPSK RHL++FGA STSQ LFVLGG  DAIDP+TGD
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTIPELPSKIRHLANFGAVSTSQKLFVLGGCGDAIDPVTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
            DDN STNEVWSFDPVTR W +RAPMLVPR+ FACCV++GKI+VAGGFTS SKSTS+ E+
Sbjct: 121 RDDNSSTNEVWSFDPVTRTWSLRAPMLVPRSTFACCVVDGKIVVAGGFTSISKSTSQAEM 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YD+EKD+W+PLPDLL THDSTCIG++IGGK++IMY G STVQ+FD+LELKWRVEDYGWLP
Sbjct: 181 YDNEKDVWIPLPDLLHTHDSTCIGLMIGGKMNIMYGGVSTVQVFDSLELKWRVEDYGWLP 240

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           G  A V  SLY M  GL+FKQ+ RD Q V+ A SQF+ RIGMA++GFRGELYVIGGVVRP
Sbjct: 241 GHKAVVGGSLYTMSQGLVFKQEERDVQAVVSA-SQFVQRIGMAIVGFRGELYVIGGVVRP 300

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            R D DLVKLSDVHVL +R EKP+W C APMS+C GTVLGCT LRI
Sbjct: 301 ERFDGDLVKLSDVHVLKVRNEKPSWCCAAPMSQCSGTVLGCTVLRI 345

[Close]

BLAST of MS018372.1 vs. ExPASy Swiss-Prot
Match: Q9M1W7 (F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1 SV=2)

HSP 1 Score: 450.7 bits (1158), Expect = 1.5e-125
Identity = 203/346 (58.67%), Postives = 263/346 (76.01%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGL++G+P+A+ALRCLA VP +LHP LELVSRSW+AA RS ELFR R+E+ SSE LLCV
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           C++DP N WQ+Y P  D W+TLP LPS+ RHL+HFGA +T+  LFVLGG SDA+ P+TGD
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
           HD   +T++VWS+D V R W  RA MLVPRAMFACCVL+GKI+VAGGFT+  KS S  E+
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YD E D+W  +PDL QTH+S C G+V+ GKVH+++KG STVQ+ ++++L W V+DYGW  
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           GPM  V+D LYVM  GL+FKQ+G D   ++ + S+F  RIGMAM     E+ ++GGV+ P
Sbjct: 248 GPMVVVEDVLYVMSHGLVFKQEG-DTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGP 307

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            RL+ D+  LSDV  L +  ++P W  VAPM+RC GT+LGCT+L I
Sbjct: 308 DRLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 352

[Close]

BLAST of MS018372.1 vs. ExPASy Swiss-Prot
Match: Q0WW40 (F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana OX=3702 GN=At1g16250 PE=2 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-35
Identity = 117/373 (31.37%), Postives = 161/373 (43.16%), Query Frame = 0


Query: 4   LIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCVCSY 63
           +I GLPD +ALRC+A++ +  H  LE VSR W+   R A+    +   G S   L V + 
Sbjct: 8   IIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLTE 67

Query: 64  DPNNTWQLYDPLRDLWITLPELPSKRR--HLSHFGAASTSQYLFVLGGRSDAIDPLTGDH 123
              N W  YDP  D W  LP   + +   H S F     S  L V+GG   A    +  H
Sbjct: 68  RSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGG-CYAPSVSSFPH 127

Query: 124 DDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTST-SKSTSKTEI 183
              + T +V  FDP  + W M A M  PR  FAC  + GK+ VAGG   T S+     E+
Sbjct: 128 QKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAEV 187

Query: 184 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIM-----YKGQSTVQIFDTLELKWRVED 243
           YD   D W  LP  +      C G+   G  H++     +  Q++ ++F+  ++ W   +
Sbjct: 188 YDPVADRWEELP-AMPRPQMDCSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTVE 247

Query: 244 YGWLPGPMA---AVQ----DSLYVMC---LGLIFKQD---------GRDRQVVIPAVSQF 303
             W P   A   AVQ    D +Y +      LI  +D         G    VV+P   + 
Sbjct: 248 DVW-PFSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWYNVGSVPSVVLPNHPRE 307

Query: 304 LHRIGMAMIGFRGELYVIGGVVRPVRLDA----DLVKLSDVHVLNLRGEKPTWYCVAPMS 345
           L   G      R ELYVIGG V           D+V+L  V V N       W    PM 
Sbjct: 308 LEAFGYGFAALRNELYVIGGKVLKWEESGAGRFDIVRLPVVRVCNPLDRPLNWRETKPMC 367

[Close]

BLAST of MS018372.1 vs. ExPASy Swiss-Prot
Match: Q93W93 (F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g55270 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 5.4e-22
Identity = 78/258 (30.23%), Postives = 115/258 (44.57%), Query Frame = 0


Query: 4   LIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCVCSY 63
           L+ GLPD +A+ CL RVP   H KL LV + W         +  R+ +G SE+ + V   
Sbjct: 78  LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query: 64  DPNN--TWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQ-YLFVLGGRSDAIDPLTGD 123
           D +   +W  +DP+  LW  LP +P +      FG A  S  +L++ GG+    DPL G 
Sbjct: 138 DRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGK----DPLRG- 197

Query: 124 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKT-E 183
                S   V  ++  T  W     ML  R  F CCV+   + VAGG     + T ++ E
Sbjct: 198 -----SMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAE 257

Query: 184 IYDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTV---QIFDTLELKWRVEDY 243
           +YD  K+ W  + D + T     IGVV   K  +   G   +   + +D     W     
Sbjct: 258 VYDPNKNRWSFIAD-MSTAMVPLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSPVSD 317

Query: 244 GWLPG---PMAAVQDSLY 252
           G + G   P  ++   LY
Sbjct: 318 GMVAGWRNPCTSLNGRLY 324

[Close]

BLAST of MS018372.1 vs. ExPASy Swiss-Prot
Match: Q9FKJ0 (F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana OX=3702 GN=At5g60570 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 8.1e-18
Identity = 70/239 (29.29%), Postives = 104/239 (43.51%), Query Frame = 0


Query: 4   LIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLL-CVCS 63
           ++ GL D +AL CLA VP   +P L  V++ +     S  LF  R+E+G  E L+  VC 
Sbjct: 49  VLPGLIDDVALNCLAWVPRSDYPSLSCVNKKYNKLINSGHLFALRKELGIVEYLVFMVC- 108

Query: 64  YDPNNTWQLYDPLRDLWITLPELPSKR--RHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 123
            DP   W ++ P++  W+ LP++P      H      A   + L V G            
Sbjct: 109 -DPRG-WLMFSPMKKKWMVLPKMPCDECFNHADKESLAVDDE-LLVFG------------ 168

Query: 124 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 183
               L    +W +   +R W+    M  PR +FA   L G  IVAGG        +  E+
Sbjct: 169 --RELFQFAIWKYSLRSRCWVKCEGMHRPRCLFASGSLGGIAIVAGGTDMNGNILASAEL 228

Query: 184 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQI-------FDTLELKWR 233
           YDS    W  LP+ + +    C G  + GK +++  G S+  +       FD    KWR
Sbjct: 229 YDSSSGRWEMLPN-MHSPRRLCSGFFMDGKFYVI-GGMSSPNVSVTFGEEFDLETRKWR 267

[Close]

BLAST of MS018372.1 vs. ExPASy Swiss-Prot
Match: Q9LM55 (F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g22040 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-17
Identity = 61/223 (27.35%), Postives = 99/223 (44.39%), Query Frame = 0


Query: 4   LIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCVCS- 63
           LI  LPD ++++ LAR+P   +  + LVSR W++A  ++E++  R+E+G +E+ L V + 
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 64  -YDPNNTWQLYDPLRDLWITLPELP------SKRRHL------------------SHFGA 123
            ++    W   DP+   W  LP +P        R+ L                  S  G 
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162

Query: 124 ASTSQYLFVLGGRSDAIDP---LTGDHDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFA 183
             +S+ +   G    A+D    + G    + + + VW FDP+  +W   + ML  RA   
Sbjct: 163 RDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWRFDPILNSWSEVSSMLASRAYSK 222

Query: 184 CCVLEGKIIVAGGFTSTSKSTS---KTEIYDSEKDLWVPLPDL 195
             VL  K+ V GG        S     E+YD   D W  +P +
Sbjct: 223 TGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSM 265

[Close]

BLAST of MS018372.1 vs. ExPASy TrEMBL
Match: A0A6J1D7Q9 (F-box/kelch-repeat protein SKIP30-like OS=Momordica charantia OX=3673 GN=LOC111018411 PE=4 SV=1)

HSP 1 Score: 726.9 bits (1875), Expect = 4.1e-206
Identity = 346/346 (100.00%), Postives = 346/346 (100.00%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV
Sbjct: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD
Sbjct: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
           HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI
Sbjct: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP
Sbjct: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP
Sbjct: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
           VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI
Sbjct: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 346

[Close]

BLAST of MS018372.1 vs. ExPASy TrEMBL
Match: A0A6J1GPT2 (F-box/kelch-repeat protein SKIP30-like OS=Cucurbita moschata OX=3662 GN=LOC111456033 PE=4 SV=1)

HSP 1 Score: 585.1 bits (1507), Expect = 1.9e-163
Identity = 271/346 (78.32%), Postives = 303/346 (87.57%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAI++RCLA VPYYLHPKLELVSRSWKAA RS ELFRARQEVGSSEDLLCV
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSYDPNNTWQLYDPL++LW+TLPELPSK  HL++FG  STSQ LFVLGGR DA+DP+TGD
Sbjct: 61  CSYDPNNTWQLYDPLQNLWMTLPELPSKITHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
            +DN STNEVWSFDPVTR W MRAPMLVPR  FACCV++GKI+VAGGFTS SKSTS+ E+
Sbjct: 121 REDNSSTNEVWSFDPVTRTWSMRAPMLVPRYTFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YD+EKD+W+PLPDLL THDSTCIG++IGGK+H+MY G STVQ+FD+LELKWRVEDYGWLP
Sbjct: 181 YDNEKDVWIPLPDLLHTHDSTCIGLMIGGKMHVMYGGVSTVQVFDSLELKWRVEDYGWLP 240

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           G  A V  SLY M  GL+FKQ+ RD Q V+ A SQF+ RIGMA++GFRGELYVIGGVVRP
Sbjct: 241 GHKAVVGGSLYTMSQGLVFKQEERDAQAVVSA-SQFVQRIGMAIVGFRGELYVIGGVVRP 300

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            R D DLVKLSDVHVL +R EKP+WYC APMSRC GTVLGCT  RI
Sbjct: 301 ERFDGDLVKLSDVHVLKVRNEKPSWYCAAPMSRCSGTVLGCTVWRI 345

[Close]

BLAST of MS018372.1 vs. ExPASy TrEMBL
Match: A0A6J1JW98 (F-box/kelch-repeat protein SKIP30-like OS=Cucurbita maxima OX=3661 GN=LOC111488452 PE=4 SV=1)

HSP 1 Score: 574.3 bits (1479), Expect = 3.4e-160
Identity = 266/346 (76.88%), Postives = 301/346 (86.99%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAI++RCLA VPYYLHPKLELVSRSWKAA RS ELFRARQEVGSSEDLLCV
Sbjct: 1   MSGLIEGLPDAISIRCLAFVPYYLHPKLELVSRSWKAAIRSTELFRARQEVGSSEDLLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSYDPNNTW+LYDPL++LW+TLPELPSK +HL++FG  STSQ LFVLGGR DA+DP+TGD
Sbjct: 61  CSYDPNNTWKLYDPLQNLWMTLPELPSKIKHLANFGVVSTSQKLFVLGGRGDAVDPVTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
            ++  STNEVWSFDPVTR W MRAPMLVPR+MFACCV++GKI+VAGGFTS SKSTS+ E+
Sbjct: 121 REETSSTNEVWSFDPVTRMWSMRAPMLVPRSMFACCVVDGKIVVAGGFTSLSKSTSQAEM 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YD EKD+W+PLPDLL T DSTCIG++IGGK+HIMY G STVQ+FD+LELKWRVE YGWLP
Sbjct: 181 YDIEKDVWIPLPDLLHTRDSTCIGLMIGGKMHIMYGGVSTVQVFDSLELKWRVEYYGWLP 240

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           G  A V  SLY M  GL+FKQ+ R  Q V+ A SQF+ RIGMAM+GFRGELYVIGG+VRP
Sbjct: 241 GHKAVVGGSLYTMSQGLVFKQEERGAQAVVSA-SQFVQRIGMAMVGFRGELYVIGGIVRP 300

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            R D DLVKLSDVHVL +R EKP+WYC AP SRC GT+LGCT LRI
Sbjct: 301 ERFDGDLVKLSDVHVLKVRNEKPSWYCAAPTSRCSGTILGCTVLRI 345

[Close]

BLAST of MS018372.1 vs. ExPASy TrEMBL
Match: A0A0A0K7B1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387780 PE=4 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.8e-153
Identity = 262/348 (75.29%), Postives = 292/348 (83.91%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAI+LRCLA +PYYLHPKLELVSRSWKAA RS ELFRARQEVG SED LCV
Sbjct: 1   MSGLIEGLPDAISLRCLAYIPYYLHPKLELVSRSWKAAIRSVELFRARQEVGFSEDFLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSY PNNTWQLYDPL + W+TLPELPSKR HL +F A STSQ LFVLGGRSDA+DP+TGD
Sbjct: 61  CSYHPNNTWQLYDPLPNRWMTLPELPSKRMHLGNFCAVSTSQKLFVLGGRSDAVDPVTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
            DDN STNEVWSFDP+TR W MRAPMLVPRAMFACCV++GKIIVAGGFTS SKSTSK E+
Sbjct: 121 RDDNFSTNEVWSFDPITRTWSMRAPMLVPRAMFACCVVDGKIIVAGGFTSKSKSTSKAEM 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YDSEKD+W PLPDLLQTHDSTCIG+V+ GK+HI+Y   STVQ+ D+ E+KWRVEDYGW+ 
Sbjct: 181 YDSEKDVWTPLPDLLQTHDSTCIGLVVRGKMHIVYNKVSTVQVLDSSEMKWRVEDYGWVL 240

Query: 241 GPMAAVQDSLYVM--CLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVV 300
           G  A V DSLYVM    G++FKQ GR  +V+  A +QF  RIGMA++GFRG+LY IGG +
Sbjct: 241 GLKAVVGDSLYVMNPLEGVVFKQYGRTWKVIALA-TQFAQRIGMAVVGFRGDLYAIGGGI 300

Query: 301 RPVRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            P R   DL KLSDVHVLNLR E+PTW C A MSRC GTVLGCTELRI
Sbjct: 301 HPNRTGGDLTKLSDVHVLNLRDEEPTWRCAAQMSRCQGTVLGCTELRI 347

[Close]

BLAST of MS018372.1 vs. ExPASy TrEMBL
Match: A0A1S3BQL6 (F-box/kelch-repeat protein SKIP30-like OS=Cucumis melo OX=3656 GN=LOC103492650 PE=4 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 4.0e-153
Identity = 264/348 (75.86%), Postives = 292/348 (83.91%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGLIEGLPDAI+LRCLA +PYYLHPKL LVSRSWKAA RS ELFRARQEVG SED LCV
Sbjct: 1   MSGLIEGLPDAISLRCLAYIPYYLHPKLALVSRSWKAAIRSVELFRARQEVGFSEDFLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           CSY PNNTWQLYDPL + W+TLPELPSKR HL +F   STSQ LFVLGGRS A+DP+TGD
Sbjct: 61  CSYHPNNTWQLYDPLPNHWMTLPELPSKRMHLGNFCTVSTSQKLFVLGGRSIAVDPVTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
            DDN STNEVWSFDP+TR W MRAPMLVPRAMFACCV++GKIIVAGGFTS SKSTSK E+
Sbjct: 121 RDDNFSTNEVWSFDPITRMWSMRAPMLVPRAMFACCVVDGKIIVAGGFTSKSKSTSKAEM 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YDSEKD+W  LPDLLQTHDSTC G VI GK+HI+Y G STVQ+ D+LE+KWRVEDYGWLP
Sbjct: 181 YDSEKDVWTLLPDLLQTHDSTCNGWVIRGKMHIVYNGVSTVQVLDSLEMKWRVEDYGWLP 240

Query: 241 GPMAAVQDSLYVMCL--GLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVV 300
           G  A V DSLYVM L  G++FKQ GR  +V + A +QFL RIGMA++GFRG+LY IGGV+
Sbjct: 241 GLKAVVGDSLYVMSLTQGVVFKQYGRAWKVFVLA-TQFLQRIGMAVVGFRGDLYAIGGVI 300

Query: 301 RPVRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            P R   DL KLSDVHVLNLR E+PTW+  A MSRC GTVLGCTELRI
Sbjct: 301 HPNRTGGDLTKLSDVHVLNLRDEEPTWHSAAQMSRCQGTVLGCTELRI 347

[Close]

BLAST of MS018372.1 vs. TAIR 10
Match: AT3G63220.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 450.7 bits (1158), Expect = 1.1e-126
Identity = 203/346 (58.67%), Postives = 263/346 (76.01%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGL++G+P+A+ALRCLA VP +LHP LELVSRSW+AA RS ELFR R+E+ SSE LLCV
Sbjct: 1   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 60

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           C++DP N WQ+Y P  D W+TLP LPS+ RHL+HFGA +T+  LFVLGG SDA+ P+TGD
Sbjct: 61  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 120

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
           HD   +T++VWS+D V R W  RA MLVPRAMFACCVL+GKI+VAGGFT+  KS S  E+
Sbjct: 121 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 180

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YD E D+W  +PDL QTH+S C G+V+ GKVH+++KG STVQ+ ++++L W V+DYGW  
Sbjct: 181 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 240

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           GPM  V+D LYVM  GL+FKQ+G D   ++ + S+F  RIGMAM     E+ ++GGV+ P
Sbjct: 241 GPMVVVEDVLYVMSHGLVFKQEG-DTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGP 300

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            RL+ D+  LSDV  L +  ++P W  VAPM+RC GT+LGCT+L I
Sbjct: 301 DRLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 345

[Close]

BLAST of MS018372.1 vs. TAIR 10
Match: AT3G63220.2 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 450.7 bits (1158), Expect = 1.1e-126
Identity = 203/346 (58.67%), Postives = 263/346 (76.01%), Query Frame = 0


Query: 1   MSGLIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCV 60
           MSGL++G+P+A+ALRCLA VP +LHP LELVSRSW+AA RS ELFR R+E+ SSE LLCV
Sbjct: 8   MSGLLDGIPEAVALRCLAHVPLHLHPNLELVSRSWRAAIRSHELFRVRKELRSSEHLLCV 67

Query: 61  CSYDPNNTWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQYLFVLGGRSDAIDPLTGD 120
           C++DP N WQ+Y P  D W+TLP LPS+ RHL+HFGA +T+  LFVLGG SDA+ P+TGD
Sbjct: 68  CAFDPENIWQVYSPNCDRWLTLPLLPSRIRHLAHFGAVTTAGMLFVLGGGSDAVSPVTGD 127

Query: 121 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKTEI 180
           HD   +T++VWS+D V R W  RA MLVPRAMFACCVL+GKI+VAGGFT+  KS S  E+
Sbjct: 128 HDGTFATDQVWSYDFVQRQWTPRASMLVPRAMFACCVLQGKIVVAGGFTTCRKSISGAEM 187

Query: 181 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTVQIFDTLELKWRVEDYGWLP 240
           YD E D+W  +PDL QTH+S C G+V+ GKVH+++KG STVQ+ ++++L W V+DYGW  
Sbjct: 188 YDPENDVWTSIPDLHQTHNSACSGLVVNGKVHVLHKGLSTVQVLESVKLGWDVKDYGWPQ 247

Query: 241 GPMAAVQDSLYVMCLGLIFKQDGRDRQVVIPAVSQFLHRIGMAMIGFRGELYVIGGVVRP 300
           GPM  V+D LYVM  GL+FKQ+G D   ++ + S+F  RIGMAM     E+ ++GGV+ P
Sbjct: 248 GPMVVVEDVLYVMSHGLVFKQEG-DTWKMVASASEFKRRIGMAMTSLSDEVLIVGGVIGP 307

Query: 301 VRLDADLVKLSDVHVLNLRGEKPTWYCVAPMSRCHGTVLGCTELRI 347
            RL+ D+  LSDV  L +  ++P W  VAPM+RC GT+LGCT+L I
Sbjct: 308 DRLNWDIKPLSDVDALTVGNDRPAWRSVAPMTRCRGTILGCTQLTI 352

[Close]

BLAST of MS018372.1 vs. TAIR 10
Match: AT1G16250.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 152.1 bits (383), Expect = 8.0e-37
Identity = 117/373 (31.37%), Postives = 161/373 (43.16%), Query Frame = 0


Query: 4   LIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCVCSY 63
           +I GLPD +ALRC+A++ +  H  LE VSR W+   R A+    +   G S   L V + 
Sbjct: 8   IIPGLPDDLALRCIAKLSHGYHGVLECVSRGWRDLVRGADYSCYKARNGWSGSWLFVLTE 67

Query: 64  DPNNTWQLYDPLRDLWITLPELPSKRR--HLSHFGAASTSQYLFVLGGRSDAIDPLTGDH 123
              N W  YDP  D W  LP   + +   H S F     S  L V+GG   A    +  H
Sbjct: 68  RSKNQWVAYDPEADRWHPLPRTRAVQDGWHHSGFACVCVSNCLLVIGG-CYAPSVSSFPH 127

Query: 124 DDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTST-SKSTSKTEI 183
              + T +V  FDP  + W M A M  PR  FAC  + GK+ VAGG   T S+     E+
Sbjct: 128 QKPVVTKDVMRFDPFKKQWKMVASMRTPRTHFACTSVSGKVYVAGGRNLTHSRGIPSAEV 187

Query: 184 YDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIM-----YKGQSTVQIFDTLELKWRVED 243
           YD   D W  LP  +      C G+   G  H++     +  Q++ ++F+  ++ W   +
Sbjct: 188 YDPVADRWEELP-AMPRPQMDCSGLSYRGCFHVLSDQVGFAEQNSSEVFNPRDMTWSTVE 247

Query: 244 YGWLPGPMA---AVQ----DSLYVMC---LGLIFKQD---------GRDRQVVIPAVSQF 303
             W P   A   AVQ    D +Y +      LI  +D         G    VV+P   + 
Sbjct: 248 DVW-PFSRAMQFAVQVMKNDRVYTIVDWGESLIKTRDTDEGEWYNVGSVPSVVLPNHPRE 307

Query: 304 LHRIGMAMIGFRGELYVIGGVVRPVRLDA----DLVKLSDVHVLNLRGEKPTWYCVAPMS 345
           L   G      R ELYVIGG V           D+V+L  V V N       W    PM 
Sbjct: 308 LEAFGYGFAALRNELYVIGGKVLKWEESGAGRFDIVRLPVVRVCNPLDRPLNWRETKPMC 367

[Close]

BLAST of MS018372.1 vs. TAIR 10
Match: AT1G55270.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 106.7 bits (265), Expect = 3.8e-23
Identity = 78/258 (30.23%), Postives = 115/258 (44.57%), Query Frame = 0


Query: 4   LIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCVCSY 63
           L+ GLPD +A+ CL RVP   H KL LV + W         +  R+ +G SE+ + V   
Sbjct: 78  LLPGLPDDLAVACLIRVPRAEHRKLRLVCKRWYRLASGNFFYSQRKLLGMSEEWVYVFKR 137

Query: 64  DPNN--TWQLYDPLRDLWITLPELPSKRRHLSHFGAASTSQ-YLFVLGGRSDAIDPLTGD 123
           D +   +W  +DP+  LW  LP +P +      FG A  S  +L++ GG+    DPL G 
Sbjct: 138 DRDGKISWNTFDPISQLWQPLPPVPREYSEAVGFGCAVLSGCHLYLFGGK----DPLRG- 197

Query: 124 HDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFACCVLEGKIIVAGGFTSTSKSTSKT-E 183
                S   V  ++  T  W     ML  R  F CCV+   + VAGG     + T ++ E
Sbjct: 198 -----SMRRVIFYNARTNKWHRAPDMLRKRHFFGCCVINNCLYVAGGECEGIQRTLRSAE 257

Query: 184 IYDSEKDLWVPLPDLLQTHDSTCIGVVIGGKVHIMYKGQSTV---QIFDTLELKWRVEDY 243
           +YD  K+ W  + D + T     IGVV   K  +   G   +   + +D     W     
Sbjct: 258 VYDPNKNRWSFIAD-MSTAMVPLIGVVYDKKWFLKGLGSHQLVMSEAYDPEVNSWSPVSD 317

Query: 244 GWLPG---PMAAVQDSLY 252
           G + G   P  ++   LY
Sbjct: 318 GMVAGWRNPCTSLNGRLY 324

[Close]

BLAST of MS018372.1 vs. TAIR 10
Match: AT1G22040.1 (Galactose oxidase/kelch repeat superfamily protein )

HSP 1 Score: 90.9 bits (224), Expect = 2.2e-18
Identity = 61/223 (27.35%), Postives = 99/223 (44.39%), Query Frame = 0


Query: 4   LIEGLPDAIALRCLARVPYYLHPKLELVSRSWKAAFRSAELFRARQEVGSSEDLLCVCS- 63
           LI  LPD ++++ LAR+P   +  + LVSR W++A  ++E++  R+E+G +E+ L V + 
Sbjct: 43  LIPSLPDELSIQILARLPRICYSSVRLVSRRWRSAVSTSEVYSLRKELGRTEEWLYVLTK 102

Query: 64  -YDPNNTWQLYDPLRDLWITLPELP------SKRRHL------------------SHFGA 123
            ++    W   DP+   W  LP +P        R+ L                  S  G 
Sbjct: 103 GHEDKLLWYALDPVSTKWQRLPPMPVVVYEEESRKSLSGLWNMITPSFNVGAIVRSFLGR 162

Query: 124 ASTSQYLFVLGGRSDAIDP---LTGDHDDNLSTNEVWSFDPVTRNWLMRAPMLVPRAMFA 183
             +S+ +   G    A+D    + G    + + + VW FDP+  +W   + ML  RA   
Sbjct: 163 RDSSEQMPFCGCAIGAVDGGLYVIGGLSRSKTVSCVWRFDPILNSWSEVSSMLASRAYSK 222

Query: 184 CCVLEGKIIVAGGFTSTSKSTS---KTEIYDSEKDLWVPLPDL 195
             VL  K+ V GG        S     E+YD   D W  +P +
Sbjct: 223 TGVLNKKLYVVGGVDRGRGGLSPLQSAEVYDPSTDAWSEVPSM 265

The following BLAST results are available for this feature:

BLAST of MS018372.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022150165.1	8.4e-206	100.00	F-box/kelch-repeat protein SKIP30-like [Momordica charantia]	[more]
KAG6575922.1	4.7e-164	79.19	F-box/kelch-repeat protein SKIP30, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7014455.1	3.0e-163	79.53	F-box/kelch-repeat protein SKIP30 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022953500.1	4.0e-163	78.32	F-box/kelch-repeat protein SKIP30-like [Cucurbita moschata] >XP_022953501.1 F-bo...	[more]
XP_023547905.1	5.7e-162	78.32	F-box/kelch-repeat protein SKIP30-like [Cucurbita pepo subsp. pepo] >XP_02354790...	[more]

BLAST of MS018372.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1W7	1.5e-125	58.67	F-box/kelch-repeat protein SKIP30 OS=Arabidopsis thaliana OX=3702 GN=SKIP30 PE=1...	[more]
Q0WW40	1.1e-35	31.37	F-box/kelch-repeat protein At1g16250 OS=Arabidopsis thaliana OX=3702 GN=At1g1625...	[more]
Q93W93	5.4e-22	30.23	F-box/kelch-repeat protein At1g55270 OS=Arabidopsis thaliana OX=3702 GN=At1g5527...	[more]
Q9FKJ0	8.1e-18	29.29	F-box/kelch-repeat protein At5g60570 OS=Arabidopsis thaliana OX=3702 GN=At5g6057...	[more]
Q9LM55	3.1e-17	27.35	F-box/kelch-repeat protein At1g22040 OS=Arabidopsis thaliana OX=3702 GN=At1g2204...	[more]

BLAST of MS018372.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D7Q9	4.1e-206	100.00	F-box/kelch-repeat protein SKIP30-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GPT2	1.9e-163	78.32	F-box/kelch-repeat protein SKIP30-like OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1JW98	3.4e-160	76.88	F-box/kelch-repeat protein SKIP30-like OS=Cucurbita maxima OX=3661 GN=LOC1114884...	[more]
A0A0A0K7B1	1.8e-153	75.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G387780 PE=4 SV=1	[more]
A0A1S3BQL6	4.0e-153	75.86	F-box/kelch-repeat protein SKIP30-like OS=Cucumis melo OX=3656 GN=LOC103492650 P...	[more]

BLAST of MS018372.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G63220.1	1.1e-126	58.67	Galactose oxidase/kelch repeat superfamily protein	[more]
AT3G63220.2	1.1e-126	58.67	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G16250.1	8.0e-37	31.37	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G55270.1	3.8e-23	30.23	Galactose oxidase/kelch repeat superfamily protein	[more]
AT1G22040.1	2.2e-18	27.35	Galactose oxidase/kelch repeat superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Bitter gourd (TR) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006652	Kelch repeat type 1	SMART	SM00612	kelc_smart	coord: 161..209 e-value: 1.5E-5 score: 34.5 coord: 103..160 e-value: 1.8E-5 score: 34.2
IPR006652	Kelch repeat type 1	PFAM	PF01344	Kelch_1	coord: 92..146 e-value: 1.1E-5 score: 24.9 coord: 149..194 e-value: 3.0E-11 score: 42.7 coord: 279..332 e-value: 2.5E-5 score: 23.8
IPR015915	Kelch-type beta propeller	GENE3D	2.120.10.80		coord: 57..342 e-value: 1.0E-35 score: 125.1
IPR015915	Kelch-type beta propeller	SUPERFAMILY	117281	Kelch motif	coord: 60..334
None	No IPR available	PANTHER	PTHR24414	F-BOX/KELCH-REPEAT PROTEIN SKIP4	coord: 2..346
None	No IPR available	PANTHER	PTHR24414:SF40	F-BOX/KELCH-REPEAT PROTEIN SKIP30	coord: 2..346

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
MS018372	MS018372	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
MS018372.1-cds	MS018372.1-cds-scaffold342:363511..364548	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
MS018372.1	MS018372.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding